mRNA_H-elongata_contig75434.15230.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75434.15230.1
Unique NamemRNA_H-elongata_contig75434.15230.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75434.15230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75434contigH-elongata_contig75434:4..666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.3472846-CDS-H-elongata_contig75434:3..1161622931160.3472846-CDS-H-elongata_contig75434:3..116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75434 4..116 +
1691679723.0787654-CDS-H-elongata_contig75434:3..1161691679723.0787654-CDS-H-elongata_contig75434:3..116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75434 4..116 +
1622931160.3718934-CDS-H-elongata_contig75434:524..6661622931160.3718934-CDS-H-elongata_contig75434:524..666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75434 525..666 +
1691679723.0891426-CDS-H-elongata_contig75434:524..6661691679723.0891426-CDS-H-elongata_contig75434:524..666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75434 525..666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75434.15230.1prot_H-elongata_contig75434.15230.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75434 4..666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75434.15230.1

>prot_H-elongata_contig75434.15230.1 ID=prot_H-elongata_contig75434.15230.1|Name=mRNA_H-elongata_contig75434.15230.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
IYLNFDFAGRIPAELGKLSRLTHLNLSKCRLIGETPRGYATSPRSLPLSP
TDLSASQGFLPVEFGDLSSLVVLNVSWNFLSGETP
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mRNA from alignment at H-elongata_contig75434:4..666+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75434.15230.1 ID=mRNA_H-elongata_contig75434.15230.1|Name=mRNA_H-elongata_contig75434.15230.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=663bp|location=Sequence derived from alignment at H-elongata_contig75434:4..666+ (Himanthalia elongata Himel1 dioecious)
ATATATTTAAACTTCGATTTTGCAGGGCGGATTCCCGCGGAGCTGGGCAA
GCTCAGCAGGCTGACGCATCTCAACCTCAGCAAATGCCGCCTGATCGGTG
AGACACCGCGAGGGTCTATTTTTCTTGCCCGGGGAAAGGCATACGCCGTC
GCCTTTTGGGGGCCGTCCATCGCACCGGTAGCTCCTTGCTCTGGGGGTTA
TCTGTCATGCATTGCCGCTTTCGTGTCAGCTGTTTATTTTTGTTTCTTTA
TGTTTTGGAGTGCGTACGAGTAGCACGTTTGTGCGTCTCCCTCTGCCCCT
CCTGCCTCTGCCGTATTGGTTTGTCTTGTCTCTCTTCATATTCCTCCGTG
TGTCTTCTCTCTCTTTGGTTGATTTTTGTGTCATGGTGTGTACGTAATCG
ATTTTGCTAGCATATATATATATATGTATATATATATATATTTTTTTTTT
GTGACTTAACCATTTGTTAAAATCTACATAGCTCATGAGACATAAGCTTC
TGCGATATTGGTGTGTGTGAGTTACGCCACTTCTCCTCGTTCCCTTCCCC
TTTCCCCCACCGACCTTTCGGCTTCCCAAGGCTTTCTCCCGGTCGAGTTT
GGAGATCTTTCCAGCCTCGTCGTGCTCAACGTCAGCTGGAACTTCCTTAG
TGGTGAGACCCCA
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Coding sequence (CDS) from alignment at H-elongata_contig75434:4..666+

>mRNA_H-elongata_contig75434.15230.1 ID=mRNA_H-elongata_contig75434.15230.1|Name=mRNA_H-elongata_contig75434.15230.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig75434:4..666+ (Himanthalia elongata Himel1 dioecious)
ATATATTTAAACTTCGATTTTGCAGGGCGGATTCCCGCGGAGCTGGGCAA
GCTCAGCAGGCTGACGCATCTCAACCTCAGCAAATGCCGCCTGATCGGTG
AGACACCGCGAGGATATATTTAAACTTCGATTTTGCAGGGCGGATTCCCG
CGGAGCTGGGCAAGCTCAGCAGGCTGACGCATCTCAACCTCAGCAAATGC
CGCCTGATCGGTGAGACACCGCGAGGTTACGCCACTTCTCCTCGTTCCCT
TCCCCTTTCCCCCACCGACCTTTCGGCTTCCCAAGGCTTTCTCCCGGTCG
AGTTTGGAGATCTTTCCAGCCTCGTCGTGCTCAACGTCAGCTGGAACTTC
CTTAGTGGTGAGACCCCATTACGCCACTTCTCCTCGTTCCCTTCCCCTTT
CCCCCACCGACCTTTCGGCTTCCCAAGGCTTTCTCCCGGTCGAGTTTGGA
GATCTTTCCAGCCTCGTCGTGCTCAACGTCAGCTGGAACTTCCTTAGTGG
TGAGACCCCA
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