mRNA_H-elongata_contig75291.15212.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75291.15212.1
Unique NamemRNA_H-elongata_contig75291.15212.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75291.15212.1 vs. uniprot
Match: B9WZI2_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=23 Tax=Sargassaceae TaxID=3014 RepID=B9WZI2_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 8.880e-19
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 PSLGIHQSDSPWGLPLLNTFILLSSGTSVTWAHHAILSGYKKDALQGLIVTII 159
            P  GI ++ SPWGLPLLNT ILLSSG SVTWAHHAI+ G+KKDAL GL++TII
Sbjct:   44 PPAGI-EAISPWGLPLLNTIILLSSGASVTWAHHAIVGGFKKDALLGLVITII 95
[Close]
BLAST of mRNA_H-elongata_contig75291.15212.1 vs. uniprot
Match: A0A8A8GQC0_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=Sargassum ilicifolium var. acaraeocarpum TaxID=1674022 RepID=A0A8A8GQC0_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 9.480e-19
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 PSLGIHQSDSPWGLPLLNTFILLSSGTSVTWAHHAILSGYKKDALQGLIVTII 159
            P  GI ++ SPWGLPLLNT ILLSSG SVTWAHHAI+ G+KK+AL GLI+TII
Sbjct:   36 PPAGI-EAISPWGLPLLNTIILLSSGASVTWAHHAIVGGFKKEALVGLIITII 87
[Close]
BLAST of mRNA_H-elongata_contig75291.15212.1 vs. uniprot
Match: A0A894K0S9_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=Sargassum aquifolium TaxID=548576 RepID=A0A894K0S9_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.240e-18
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 PSLGIHQSDSPWGLPLLNTFILLSSGTSVTWAHHAILSGYKKDALQGLIVTII 159
            P  GI ++ SPWGLPLLNT ILLSSG SVTWAHHAI+ G+KK+AL GL++TII
Sbjct:   36 PPAGI-EAISPWGLPLLNTIILLSSGASVTWAHHAIVGGFKKEALLGLVITII 87
[Close]
BLAST of mRNA_H-elongata_contig75291.15212.1 vs. uniprot
Match: W5XK28_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=16 Tax=Sargassaceae TaxID=3014 RepID=W5XK28_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.080e-18
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 PSLGIHQSDSPWGLPLLNTFILLSSGTSVTWAHHAILSGYKKDALQGLIVTII 159
            P  GI ++ SPWGLPLLNT ILLSSG SVTWAHHAI+ G+KK+AL GL++TII
Sbjct:   29 PPAGI-EAISPWGLPLLNTIILLSSGASVTWAHHAIVGGFKKEALLGLVITII 80
[Close]
BLAST of mRNA_H-elongata_contig75291.15212.1 vs. uniprot
Match: W5XK19_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=Sargassum aquifolium TaxID=548576 RepID=W5XK19_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.080e-18
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 PSLGIHQSDSPWGLPLLNTFILLSSGTSVTWAHHAILSGYKKDALQGLIVTII 159
            P  GI ++ SPWGLPLLNT ILLSSG SVTWAHHAI+ G+KK+AL GL++TII
Sbjct:   29 PPAGI-EAISPWGLPLLNTIILLSSGASVTWAHHAIVGGFKKEALLGLVITII 80
[Close]
BLAST of mRNA_H-elongata_contig75291.15212.1 vs. uniprot
Match: A0A0H4CTW1_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=Turbinaria decurrens TaxID=127558 RepID=A0A0H4CTW1_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.290e-18
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 PSLGIHQSDSPWGLPLLNTFILLSSGTSVTWAHHAILSGYKKDALQGLIVTII 159
            P  GI ++ SPWGLPLLNT ILLSSG SVTWAHHAI+ G+KK+AL GL++TI+
Sbjct:   39 PPAGI-EAISPWGLPLLNTIILLSSGASVTWAHHAIVGGFKKEALLGLVITIV 90
[Close]
BLAST of mRNA_H-elongata_contig75291.15212.1 vs. uniprot
Match: I6TIF7_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=11 Tax=Sargassaceae TaxID=3014 RepID=I6TIF7_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.090e-18
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 PSLGIHQSDSPWGLPLLNTFILLSSGTSVTWAHHAILSGYKKDALQGLIVTII 159
            P  GI ++ SPWGLPLLNT ILLSSG SVTWAHHAI+ G+KK+AL GLI+T+I
Sbjct:   26 PPAGI-EAISPWGLPLLNTIILLSSGASVTWAHHAIVGGFKKEALVGLIITVI 77
[Close]
BLAST of mRNA_H-elongata_contig75291.15212.1 vs. uniprot
Match: I6S9H6_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=12 Tax=Sargassaceae TaxID=3014 RepID=I6S9H6_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.160e-18
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 PSLGIHQSDSPWGLPLLNTFILLSSGTSVTWAHHAILSGYKKDALQGLIVTII 159
            P  GI ++ SPWGLPLLNT ILLSSG SVTWAHHAI+ G+KK+AL GLI+TI+
Sbjct:   27 PPAGI-EAISPWGLPLLNTIILLSSGASVTWAHHAIVGGFKKEALVGLIITIV 78
[Close]
BLAST of mRNA_H-elongata_contig75291.15212.1 vs. uniprot
Match: A0A068AEL8_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=2 Tax=Sirophysalis trinodis TaxID=1197255 RepID=A0A068AEL8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 3.690e-18
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 PSLGIHQSDSPWGLPLLNTFILLSSGTSVTWAHHAILSGYKKDALQGLIVTII 159
            P  GI ++ SPWGLPLLNT ILLSSG SVTWAHHAI+ G+KK+AL GL++TII
Sbjct:   34 PPAGI-KAISPWGLPLLNTIILLSSGASVTWAHHAIVGGFKKEALLGLVITII 85
[Close]
BLAST of mRNA_H-elongata_contig75291.15212.1 vs. uniprot
Match: A0A068ACI2_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=45 Tax=Sargassaceae TaxID=3014 RepID=A0A068ACI2_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.910e-18
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 PSLGIHQSDSPWGLPLLNTFILLSSGTSVTWAHHAILSGYKKDALQGLIVTII 159
            P  GI ++ SPWGLPLLNT ILLSSG SVTWAHHAI+ G+KK+AL GL+VTI+
Sbjct:   27 PPAGI-EAISPWGLPLLNTIILLSSGASVTWAHHAIVGGFKKEALLGLVVTIV 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75291.15212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B9WZI2_9PHAE8.880e-1973.58Cytochrome c oxidase subunit 3 (Fragment) n=23 Tax... [more]
A0A8A8GQC0_9PHAE9.480e-1973.58Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=... [more]
A0A894K0S9_9PHAE1.240e-1871.70Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=... [more]
W5XK28_9PHAE2.080e-1871.70Cytochrome c oxidase subunit 3 (Fragment) n=16 Tax... [more]
W5XK19_9PHAE2.080e-1871.70Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=... [more]
A0A0H4CTW1_9PHAE2.290e-1869.81Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=... [more]
I6TIF7_9PHAE3.090e-1871.70Cytochrome c oxidase subunit 3 (Fragment) n=11 Tax... [more]
I6S9H6_9PHAE3.160e-1871.70Cytochrome c oxidase subunit 3 (Fragment) n=12 Tax... [more]
A0A068AEL8_9PHAE3.690e-1871.70Cytochrome c oxidase subunit 3 (Fragment) n=2 Tax=... [more]
A0A068ACI2_9PHAE3.910e-1871.70Cytochrome c oxidase subunit 3 (Fragment) n=45 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75291contigH-elongata_contig75291:2836..2994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score69.7
Seed ortholog evalue4.6e-10
Seed eggNOG ortholog1217720.ALOX01000056_gene942
Preferred namectaE
KEGG rclassRC00016
KEGG koko:K02276
KEGG TC3.D.4.4,3.D.4.6
KEGG ReactionR00081
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00155
GOsGO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044464,GO:0071944
EggNOG free text desc.cytochrome c oxidase
EggNOG OGs1MUCK@1224,2JPFX@204441,2TQWA@28211,COG1845@1,COG1845@2
EC1.9.3.1
COG Functional cat.C
BiGG ReactioniJN678.ctaE
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorysignal peptide
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.3210855-CDS-H-elongata_contig75291:2835..29941622931158.3210855-CDS-H-elongata_contig75291:2835..2994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75291 2836..2994 +
1691679722.1955159-CDS-H-elongata_contig75291:2835..29941691679722.1955159-CDS-H-elongata_contig75291:2835..2994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75291 2836..2994 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75291.15212.1prot_H-elongata_contig75291.15212.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75291 2836..2994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75291.15212.1

>prot_H-elongata_contig75291.15212.1 ID=prot_H-elongata_contig75291.15212.1|Name=mRNA_H-elongata_contig75291.15212.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
PSLGIHQSDSPWGLPLLNTFILLSSGTSVTWAHHAILSGYKKDALQGLIV
TII
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mRNA from alignment at H-elongata_contig75291:2836..2994+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75291.15212.1 ID=mRNA_H-elongata_contig75291.15212.1|Name=mRNA_H-elongata_contig75291.15212.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig75291:2836..2994+ (Himanthalia elongata Himel1 dioecious)
CCGAGTCTTGGAATACACCAAAGTGATAGTCCTTGGGGATTGCCTTTATT
AAATACTTTTATTTTACTATCTTCTGGAACTAGCGTTACATGGGCTCATC
ATGCTATTCTTTCAGGTTATAAAAAGGACGCTTTACAAGGTTTGATAGTT
ACTATAATA
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Coding sequence (CDS) from alignment at H-elongata_contig75291:2836..2994+

>mRNA_H-elongata_contig75291.15212.1 ID=mRNA_H-elongata_contig75291.15212.1|Name=mRNA_H-elongata_contig75291.15212.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig75291:2836..2994+ (Himanthalia elongata Himel1 dioecious)
CCGAGTCTTGGAATACACCAAAGTGATAGTCCTTGGGGATTGCCTTTATT
AAATACTTTTATTTTACTATCTTCTGGAACTAGCGTTACATGGGCTCATC
ATGCTATTCTTTCAGGTTATAAAAAGGACGCTTTACAAGGTTTGATAGTT
ACTATAATACCGAGTCTTGGAATACACCAAAGTGATAGTCCTTGGGGATT
GCCTTTATTAAATACTTTTATTTTACTATCTTCTGGAACTAGCGTTACAT
GGGCTCATCATGCTATTCTTTCAGGTTATAAAAAGGACGCTTTACAAGGT
TTGATAGTTACTATAATA
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