mRNA_H-elongata_contig75234.15205.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig75234.15205.1 vs. uniprot
Match: A0A6H5JG58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG58_9PHAE) HSP 1 Score: 218 bits (555), Expect = 1.800e-64 Identity = 103/141 (73.05%), Postives = 113/141 (80.14%), Query Frame = 1
Query: 1 STGDEYFDDTHSFNLVTNAWGVLKTTGDRPSPRYEHQAFIDGNSMYVVGGGSFEPEGPDLDVYRLHLA---GARVLEWERIRPIGTPPRCRAAHGLAWDRVGRAAYIWGGFTSGMKLDCTFHALRLPP-CPSVPLVAGSVA 411
STG EYF+DT +F+L T W L TTG+RPSPRY+HQAF+D + MYVVGGGSFEPEGPDLDVYRL L G +LEWER+RP GTPPRCRAAHGLAWDRVGRAAYIWGGFTSGM+LD TF ALRLPP P VP A A
Sbjct: 187 STGHEYFNDTQAFDLATGTWTALATTGERPSPRYKHQAFLDADFMYVVGGGSFEPEGPDLDVYRLPLTAGGGKALLEWERVRPTGTPPRCRAAHGLAWDRVGRAAYIWGGFTSGMELDSTFCALRLPPSAPPVPRAAQKTA 327
BLAST of mRNA_H-elongata_contig75234.15205.1 vs. uniprot
Match: D8LLR4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLR4_ECTSI) HSP 1 Score: 124 bits (310), Expect = 1.810e-31 Identity = 66/123 (53.66%), Postives = 76/123 (61.79%), Query Frame = 1
Query: 1 STGDEYFDDTHSFNLVTNAWGVLKTTGDRPSPRYEHQAFIDGNSMYVVGGGSFEPEGPDLDVYRLHLA---GARVLEWERIRPIGTPPRCRAAHGLAWDRVGRAAYIWGGFTSGMKLDCTFHA 360
STG EYF+DT +F+L T W L TTG+RPSPRY+HQAF+D + MYVVGGGSFEPEGPDLDVYRL L G +LEWER P+ + AA A VG W SG F A
Sbjct: 118 STGHEYFNDTQAFDLATGTWTALATTGERPSPRYKHQAFLDADFMYVVGGGSFEPEGPDLDVYRLPLTAGGGKALLEWERA-PVPSTATAAAAAPAAVPVVGEKL-SWVSLPSGQGGSAAFAA 238
BLAST of mRNA_H-elongata_contig75234.15205.1 vs. uniprot
Match: A0A836CLJ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLJ1_9STRA) HSP 1 Score: 123 bits (309), Expect = 2.210e-30 Identity = 60/124 (48.39%), Postives = 79/124 (63.71%), Query Frame = 1
Query: 1 STGDEYFDDTHSFNLVTNAWGVLKTTGDRPSPRYEHQAFIDGNSMYVVGGGSFEPEGPDLDVYRLHLAGARVLEWERIRPIGTPPRCRAAHGLAWDRV-GRAAYIWGGFTSGMKLDCTFHALRL 369
STG EY + H +NL TN W L T G RP+PRY+HQAFI G+SMYV+GGG F+P D+DV+RL L + W ++ G+ P R AH A+D G A Y+WGGFT+G++ F+ L L
Sbjct: 207 STGLEYSNALHQYNLKTNRWQQLATLGPRPTPRYKHQAFIHGSSMYVIGGGCFKPLCEDIDVHRLDLT---TMTWRQVATRGSVPMARVAHTCAYDSSEGGAVYMWGGFTAGLQCLRNFYRLSL 327
BLAST of mRNA_H-elongata_contig75234.15205.1 vs. uniprot
Match: A0A836CQE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQE2_9STRA) HSP 1 Score: 115 bits (287), Expect = 9.700e-28 Identity = 55/120 (45.83%), Postives = 71/120 (59.17%), Query Frame = 1
Query: 1 STGDEYFDDTHSFNLVTNAWGVLKTTGDRPSPRYEHQAFIDGNSMYVVGGGSFEPEGPDLDVYRLHLAGARVLEWERIRPIGTPPRCRAAHGLAWDRVGRAAYIWGGFTSGMKLDCTFHA 360
STG Y +D +N+ TN W L TTG RPSPRY+HQA + G++MYV+GGG F+PE +D+YRL L R L W+ G PR R AH ++D Y+WGGFT + F A
Sbjct: 171 STGLHYTNDLFEYNMTTNCWRKLATTGKRPSPRYKHQAVVVGDAMYVIGGGCFKPEQAAIDLYRLDL---RTLVWDTPAMGGEVPRARVAHSCSFDPATSTIYLWGGFTGELSRLQDFFA 287
BLAST of mRNA_H-elongata_contig75234.15205.1 vs. uniprot
Match: D7FP90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP90_ECTSI) HSP 1 Score: 107 bits (267), Expect = 7.240e-25 Identity = 53/124 (42.74%), Postives = 69/124 (55.65%), Query Frame = 1
Query: 1 STGDEYFDDTHSFNLVTNAWGVLKTTGDRPSPRYEHQAFIDGNSMYVVGGGSFEPEGPDLDVYRLHLAGARVLEWERIRPIGTPPRCRAAHGLAWDRVGRAAYIWGGFTSGMKLDCTFHALRLP 372
STG Y +D +N+ TN W L T+G PSPRY+HQA + G+ MYV+GGG F+PE +D+Y L L R L WE G P+ R AH ++D Y+WGGFTS + F P
Sbjct: 177 STGLHYTNDLFEYNVRTNKWKRLVTSGRMPSPRYKHQAVVVGHKMYVIGGGCFKPEQSGIDLYCLDL---RSLVWEETTMKGELPKARVAHSCSFDAETDTIYLWGGFTSELSRLQDFFGFHCP 297
BLAST of mRNA_H-elongata_contig75234.15205.1 vs. uniprot
Match: D7FP81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP81_ECTSI) HSP 1 Score: 106 bits (264), Expect = 1.700e-24 Identity = 52/121 (42.98%), Postives = 70/121 (57.85%), Query Frame = 1
Query: 1 STGDEYFDDTHSFNLVTNAWGVLKTTGDRPSPRYEHQAFIDGNSMYVVGGGSFEPEGPDLDVYRLHLAGARVLEWE--RIRPIGTPPRCRAAHGLAWDRVGRAAYIWGGFTSGMKLDCTFH 357
STG Y +D +N+ +N W L TTG +PSPRY+HQA G+ MYV+GGG F+PE +D+Y L L + L WE G P+ R AH ++D VG Y+WGGFT + F+
Sbjct: 172 STGLHYSNDLFEYNVCSNRWRKLTTTGRKPSPRYKHQAVAVGDKMYVIGGGCFKPEQSSIDLYCLDL---KTLVWEMDETEMKGDLPKARVAHSCSFDPVGGDIYLWGGFTGELSRLADFY 289
BLAST of mRNA_H-elongata_contig75234.15205.1 vs. uniprot
Match: A0A7R9GAP2_9CRUS (Hypothetical protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9GAP2_9CRUS) HSP 1 Score: 51.6 bits (122), Expect = 7.830e-5 Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = 1
Query: 7 GDEYFDDTHS-----FNLVTNAWGVLKTTGDRPSPRYEHQAFIDG-NSMYVVGGGSFEPEGPDLDVYRLHLAGARVLEWERIR 237
G E+ D +HS +N+ +N W ++ TTG +P P +H I G N++Y+ GG E D+YRL+++ L+WER+R
Sbjct: 354 GGEFSDGSHSDELWTYNVTSNIWILVNTTGVKPPPLSKHTLTIVGDNTLYLFGGSKSYGEFSS-DMYRLNMSW-NPLKWERVR 434 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75234.15205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig75234.15205.1 >prot_H-elongata_contig75234.15205.1 ID=prot_H-elongata_contig75234.15205.1|Name=mRNA_H-elongata_contig75234.15205.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp STGDEYFDDTHSFNLVTNAWGVLKTTGDRPSPRYEHQAFIDGNSMYVVGGback to top mRNA from alignment at H-elongata_contig75234:697..1116+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig75234.15205.1 ID=mRNA_H-elongata_contig75234.15205.1|Name=mRNA_H-elongata_contig75234.15205.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=420bp|location=Sequence derived from alignment at H-elongata_contig75234:697..1116+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig75234:697..1116+ >mRNA_H-elongata_contig75234.15205.1 ID=mRNA_H-elongata_contig75234.15205.1|Name=mRNA_H-elongata_contig75234.15205.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig75234:697..1116+ (Himanthalia elongata Himel1 dioecious)back to top |