mRNA_H-elongata_contig75217.15203.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75217.15203.1
Unique NamemRNA_H-elongata_contig75217.15203.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75217.15203.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 2.820e-29
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:    7 MVFEAIKALKERNGSSIQAIKKHITTANPALNFTPHQMRSALKKGVESGKFIKVKSSYKLSLEAKKP 207
            MVF+AIK+LKERNGSSIQAIKK IT   PALNFTPHQMRSALKKGVE+GKFIKVKSSYKLS EAKKP
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKP 67
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BLAST of mRNA_H-elongata_contig75217.15203.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 3.990e-29
Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    7 MVFEAIKALKERNGSSIQAIKKHITTANPALNFTPHQMRSALKKGVESGKFIKVKSSYKLSLEAKKPA 210
            MVF+AIK LKERNGSSIQAIKK IT   P LNFTPHQMRSALKKGVESGKFIK+K+SYKLS EAKKPA
Sbjct:   11 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPA 78
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BLAST of mRNA_H-elongata_contig75217.15203.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 9.150e-29
Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    7 MVFEAIKALKERNGSSIQAIKKHITTANPALNFTPHQMRSALKKGVESGKFIKVKSSYKLSLEAKKPA 210
            MVF+AIK LKERNGSSIQAIKK IT   P LNFTPHQMRSALKKGVESGKF+K+K+SYKLS EAKKPA
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPA 68
[Close]
BLAST of mRNA_H-elongata_contig75217.15203.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 7.100e-27
Identity = 57/68 (83.82%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    7 MVFEAIKALKERNGSSIQAIKKHITTANPALNFTPHQMRSALKKGVESGKFIKVKSSYKLSLEAKKPA 210
            MVF+AIK LKERNGSSIQAIKK IT   P LNFTPHQMR ALKKGVESGKFIK+K+SYKLS EAKKPA
Sbjct:  104 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKPA 171
[Close]
BLAST of mRNA_H-elongata_contig75217.15203.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 7.340e-27
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    7 MVFEAIKALKERNGSSIQAIKKHITTANPALNFTPHQMRSALKKGVESGKFIKVKSSYKLSLEAKKPA 210
            MVF+AIKALKER GSS+ A+KK I    P+LNFTPHQMRSALKKG ESGKFIKVKSSYKLS EAKKPA
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 68
[Close]
BLAST of mRNA_H-elongata_contig75217.15203.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 9.280e-27
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 SQMVFEAIKALKERNGSSIQAIKKHITTANPALNFTPHQMRSALKKGVESGKFIKVKSSYKLSLEAKKPA 210
            S MVF+AIKALKER GSS+ A+KK I    P+LNFTPHQMRSALKKG ESGKFIKVKSSYKLS EAKKPA
Sbjct:   10 SVMVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 79
[Close]
BLAST of mRNA_H-elongata_contig75217.15203.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.340e-21
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    4 QMVFEAIKALKERNGSSIQAIKKHITTANPALNFTPHQMRSALKKGVESGKFIKVKSSYKLSLEAKKPA 210
            +M  EA+KALKERNGSS+ AIKKHIT + P+L FT H MRSALKKGVESGKFIKVK+SYKLS   ++PA
Sbjct:    6 EMTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEPA 74
[Close]
BLAST of mRNA_H-elongata_contig75217.15203.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.290e-21
Identity = 48/69 (69.57%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 SQMVFEAIKALKERNGSSIQAIKKHITTANPALNFTPHQMRSALKKGVESGKFIKVKSSYKLSLEAKKP 207
            S+M   AI ALKERNGSS+ AIKKHI    P LNF PHQ+R ALKKG E+G FIKVK+SYK+S EAKKP
Sbjct:    5 SEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKP 73
[Close]
BLAST of mRNA_H-elongata_contig75217.15203.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 3.820e-21
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    7 MVFEAIKALKERNGSSIQAIKKHITTANPALNFTPHQMRSALKKGVESGKFIKVKSSYKLS 189
            MVF+AIK LKERNGSSIQA+KK IT   PAL+FTPHQMRSALKKGVE+GKFIKV+ +  L+
Sbjct:    1 MVFDAIKTLKERNGSSIQAMKKSITATYPALHFTPHQMRSALKKGVETGKFIKVRHALPLA 61
[Close]
BLAST of mRNA_H-elongata_contig75217.15203.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.390e-19
Identity = 47/62 (75.81%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    4 QMVFEAIKALKERNGSSIQAIKKHITTANPALNFTPHQMRSALKKGVESGKFIKVKSSYKLS 189
            +M  EA+KALKERNGSS+ AIKKHIT + P+L FT H +RSALKKGVESGKFIKVK+SYKLS
Sbjct:    6 EMTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLS 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75217.15203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ75_ECTSI2.820e-2988.06H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQ80_ECTSI3.990e-2985.29Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KST0_9PHAE9.150e-2983.82H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
A0A6H5KCU1_9PHAE7.100e-2783.82H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JHR9_9PHAE7.340e-2780.88H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4I5_ECTSI9.280e-2780.00H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LJB8_ECTSI1.340e-2172.46H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMF1_ECTSI2.290e-2169.57H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K9S6_9PHAE3.820e-2175.41H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIM8_9PHAE1.390e-1975.81H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75217contigH-elongata_contig75217:1035..1765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue3.9e-23
Seed eggNOG ortholog2880.D7FWJ4
Preferred nameH1
KEGG koko:K11275
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size498
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75217.15203.1prot_H-elongata_contig75217.15203.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75217 1035..1759 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.4483607-CDS-H-elongata_contig75217:1034..13671622931157.4483607-CDS-H-elongata_contig75217:1034..1367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75217 1035..1367 -
1691679721.880211-CDS-H-elongata_contig75217:1034..13671691679721.880211-CDS-H-elongata_contig75217:1034..1367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75217 1035..1367 -
1622931157.4769883-CDS-H-elongata_contig75217:1600..17591622931157.4769883-CDS-H-elongata_contig75217:1600..1759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75217 1601..1759 -
1691679721.891183-CDS-H-elongata_contig75217:1600..17591691679721.891183-CDS-H-elongata_contig75217:1600..1759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75217 1601..1759 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.488841-UTR-H-elongata_contig75217:1759..17651622931157.488841-UTR-H-elongata_contig75217:1759..1765Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75217 1760..1765 -
1691679721.8992865-UTR-H-elongata_contig75217:1759..17651691679721.8992865-UTR-H-elongata_contig75217:1759..1765Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75217 1760..1765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75217.15203.1

>prot_H-elongata_contig75217.15203.1 ID=prot_H-elongata_contig75217.15203.1|Name=mRNA_H-elongata_contig75217.15203.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
MVFEAIKALKERNGSSIQAIKKHITTANPALNFTPHQMRSALKKGVESGK
FIKVKSSYKLSLEAKKPALKPKVKKPVAKKVKAAPKKMVKKVKKVVSKKA
ATKKVTSKKAATPKKATTPKKTPTVKKIVTKKVATKKVTATAAKKTTVTK
KKAAPKKPAAEKA*
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mRNA from alignment at H-elongata_contig75217:1035..1765-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75217.15203.1 ID=mRNA_H-elongata_contig75217.15203.1|Name=mRNA_H-elongata_contig75217.15203.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=731bp|location=Sequence derived from alignment at H-elongata_contig75217:1035..1765- (Himanthalia elongata Himel1 dioecious)
TCACAGATGGTGTTCGAGGCTATCAAGGCTCTAAAGGAGCGTAACGGATC
CAGCATCCAGGCGATCAAGAAGCACATCACTACCGCCAACCCGGCTCTAA
ACTTTACTCCTCACCAAATGCGCAGTGCTCTGAAGAAAGGCGTCGAGTCC
GGCAAGTTTATCAAGGTAAACATCGAGCACTACATGCTTACCCTGATGAC
TGAGGTAGTGTCGATACCGATGTCCAAGCCGTGTACGTGGGATATTTTGT
TTTCGTTCCGTGAAAAATCACTTGCGAATCATATTGAATGTCAGTTGTTA
CCAACCTCTATCCCACCGAGGTCAGGTTGAGTTTGTTCAATCTTTACTTT
TCCTCTTGATTCATCTCGGTTCGAACGCTTCATCTAACTAACTACCAGGT
AAAGAGCTCGTACAAGCTGAGCCTCGAGGCGAAGAAGCCCGCCCTGAAGC
CTAAGGTGAAGAAGCCCGTAGCCAAGAAAGTGAAGGCAGCGCCAAAGAAA
ATGGTGAAGAAGGTGAAGAAGGTCGTCTCAAAGAAGGCTGCAACCAAGAA
GGTCACCTCAAAGAAAGCAGCTACCCCTAAGAAGGCAACTACTCCCAAGA
AGACCCCAACTGTGAAGAAAATTGTAACGAAGAAAGTGGCTACGAAGAAG
GTCACCGCCACGGCTGCTAAGAAAACCACGGTAACTAAAAAGAAAGCTGC
TCCGAAAAAGCCAGCCGCCGAAAAGGCCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig75217:1035..1765-

>mRNA_H-elongata_contig75217.15203.1 ID=mRNA_H-elongata_contig75217.15203.1|Name=mRNA_H-elongata_contig75217.15203.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig75217:1035..1765- (Himanthalia elongata Himel1 dioecious)
ATGGTGTTCGAGGCTATCAAGGCTCTAAAGGAGCGTAACGGATCCAGCAT
CCAGGCGATCAAGAAGCACATCACTACCGCCAACCCGGCTCTAAACTTTA
CTCCTCACCAAATGCGCAGTGCTCTGAAGAAAGGCGTCGAGTCCGGCAAG
TTTATCAAGATGGTGTTCGAGGCTATCAAGGCTCTAAAGGAGCGTAACGG
ATCCAGCATCCAGGCGATCAAGAAGCACATCACTACCGCCAACCCGGCTC
TAAACTTTACTCCTCACCAAATGCGCAGTGCTCTGAAGAAAGGCGTCGAG
TCCGGCAAGTTTATCAAGGTAAAGAGCTCGTACAAGCTGAGCCTCGAGGC
GAAGAAGCCCGCCCTGAAGCCTAAGGTGAAGAAGCCCGTAGCCAAGAAAG
TGAAGGCAGCGCCAAAGAAAATGGTGAAGAAGGTGAAGAAGGTCGTCTCA
AAGAAGGCTGCAACCAAGAAGGTCACCTCAAAGAAAGCAGCTACCCCTAA
GAAGGCAACTACTCCCAAGAAGACCCCAACTGTGAAGAAAATTGTAACGA
AGAAAGTGGCTACGAAGAAGGTCACCGCCACGGCTGCTAAGAAAACCACG
GTAACTAAAAAGAAAGCTGCTCCGAAAAAGCCAGCCGCCGAAAAGGCCTA
AGTAAAGAGCTCGTACAAGCTGAGCCTCGAGGCGAAGAAGCCCGCCCTGA
AGCCTAAGGTGAAGAAGCCCGTAGCCAAGAAAGTGAAGGCAGCGCCAAAG
AAAATGGTGAAGAAGGTGAAGAAGGTCGTCTCAAAGAAGGCTGCAACCAA
GAAGGTCACCTCAAAGAAAGCAGCTACCCCTAAGAAGGCAACTACTCCCA
AGAAGACCCCAACTGTGAAGAAAATTGTAACGAAGAAAGTGGCTACGAAG
AAGGTCACCGCCACGGCTGCTAAGAAAACCACGGTAACTAAAAAGAAAGC
TGCTCCGAAAAAGCCAGCCGCCGAAAAGGCCTAA
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