mRNA_H-elongata_contig75210.15202.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Match: D7G064_ECTSI (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G064_ECTSI) HSP 1 Score: 240 bits (612), Expect = 4.530e-70 Identity = 153/237 (64.56%), Postives = 168/237 (70.89%), Query Frame = 1
Query: 1 QEEIANFRPTAEHLDYPAVLERAR---AREDAAAKTLTAPKAETPTVEPPPGS------VYSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMKRAAITISGGVINRSVALS--SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDEFQAR 678
Q++IA+FRPT E LDYP +L RA D+ T P + P+ PP S Y+TWYPPLRSTL VLSKVYRAVDMGVFEDLAQL+VAACAES+K+AA++IS GV S S XXXXXXXXX GEGGLDAQLFLIKHLLTLREQLTPFHIQFV AE KLNFGSTRMALRKFIRHTP+LFRLS KNAL+ELTVDSIPTIDE QAR
Sbjct: 600 QDDIASFRPTPEDLDYPGMLLRAAKGGGTGDSLVNARTGP-GDQPSPSSPPSSGKGSAPAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLKKAAVSISAGVTAGSAPSPPVSSGGGGRGAPGGALAGGSVVPRXXXXXXXXXGSGEGGLDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGSTRMALRKFIRHTPALFRLSSKNALVELTVDSIPTIDEVQAR 835
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Match: A0A835YUG6_9STRA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG6_9STRA) HSP 1 Score: 120 bits (301), Expect = 1.300e-27 Identity = 87/228 (38.16%), Postives = 115/228 (50.44%), Query Frame = 1
Query: 1 QEEIANFRPTAE--HLDYPAVLERARAREDAAAKTLTAPKAETPTVEPPPGSVYSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMKRAAITISGGVINRSVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTP--SLFRLSRKNALLELTVDSIPTIDEFQ 672
Q ++A FRP + LDYPAVL RA A AA Y TWYPP+R LLVLSK+YR VDMGVFED+A AE+++ A+T + R+VA + LD LFL+KHLLTLREQL PF I F+R + KLNF +T ALR+ + + +LFRLS +N L++ +S+P +DE +
Sbjct: 730 QRDVAQFRPREDGADLDYPAVLSRASAAAIAA---------------------YDTWYPPMRVGLLVLSKIYRVVDMGVFEDIA-------AETVR--AVTAALVAAGRAVAAHA----------------------------------SSLDGHLFLVKHLLTLREQLEPFDISFMRNDRKLNFSTTVSALRRLAQPSSGLALFRLSMQNVLIQTAKNSLPAVDEVE 893
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Match: A0A7S2SLN9_9STRA (Conserved oligomeric Golgi complex subunit 3 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLN9_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.360e-24 Identity = 67/173 (38.73%), Postives = 89/173 (51.45%), Query Frame = 1
Query: 148 SVYSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMKRAAITISGGVINRSVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDE 666
++Y+ WYPPLRSTL++LSK+Y AV+ VFEDLA V C + + AA +S G D LFLIKHLLTLREQLTPF I F + + +L+F STR AL +F+ +F ++R+NALL L D +P +DE
Sbjct: 13 ALYAGWYPPLRSTLILLSKIYHAVENSVFEDLAGETVGLCTDVLGAAASRVSSL-------------------------------------------HGSEDGDLFLIKHLLTLREQLTPFDINFSQLKRRLDFSSTRQALSRFMAERGRVFAMTRQNALLSLAKDGLPQVDE 142
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Match: W7U7M5_9STRA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U7M5_9STRA) HSP 1 Score: 108 bits (271), Expect = 4.970e-24 Identity = 66/172 (38.37%), Postives = 91/172 (52.91%), Query Frame = 1
Query: 151 VYSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMKRAAITISGGVINRSVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDE 666
VY+TW+P L+ TL +LSK+YRAV++ VF+++AQ A+AAC S AA + +G +DA LFL+KHLL LREQL PF I+F E +L+F STR AL +F +LFR+ NALL L + S+PT++E
Sbjct: 105 VYATWFPTLQMTLSLLSKIYRAVELHVFQEMAQQALAACTYSFLAAAKVLR-------------------------------------------EQKGDMDADLFLVKHLLILREQLVPFDIEFAAIEKRLDFNSTRGALTRFFVDRHNLFRMGTDNALLSLALGSVPTVNE 233
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Match: A0A6H5JQ09_9PHAE (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ09_9PHAE) HSP 1 Score: 100 bits (249), Expect = 1.140e-23 Identity = 61/103 (59.22%), Postives = 72/103 (69.90%), Query Frame = 1
Query: 1 QEEIANFRPTAEHLDYPAVLERARAREDAAAKTLTAPKA---ETPTVEPPPGSV------YSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMK 282
Q++IA+FRPT E LDYP +L RA AR + L + + P+ PP S Y+TWYPPLRSTL VLSKVYRAVDMGVFEDLAQL+VAACAES+K
Sbjct: 7 QDDIASFRPTPEDLDYPGMLLRA-ARGGGTSDGLVNARTGAGDQPSPSSPPSSTKGSAPAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLK 108
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Match: A0A1Y1IEB9_KLENI (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IEB9_KLENI) HSP 1 Score: 101 bits (252), Expect = 4.120e-21 Identity = 71/224 (31.70%), Postives = 104/224 (46.43%), Query Frame = 1
Query: 1 QEEIANFRPTAEHLDYPAVLERARAREDAAAKTLTAPKAETPTVEPPPGSVYSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMKRAAITISGGVINRSVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDEFQ 672
++EIAN+ PT + LDYPA LE+ + + + A + Y+TWYPPL TL LSK+YR VD +F LAQ A++ C+ S++RA ++S+A + G LD QLF++KHLL LREQ+ PF I F +L+F +R+ +R S+F S N L+ + P + E Q
Sbjct: 474 RDEIANYNPTPDDLDYPAKLEKVPSTQSEIQEEGAAGEDGQ--------DAYTTWYPPLERTLSCLSKLYRCVDHNIFTGLAQEAISLCSMSIQRA---------SKSIAKKA----------------------------------GSLDGQLFVVKHLLILREQIAPFDIDFAVTYKELDFSHMLEHMRRILRGQASIFAFSSSNGLVRVLSSGAPRVVENQ 646
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Match: A0A7S3XWF7_HETAK (Conserved oligomeric Golgi complex subunit 3 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWF7_HETAK) HSP 1 Score: 100 bits (249), Expect = 4.400e-21 Identity = 75/222 (33.78%), Postives = 100/222 (45.05%), Query Frame = 1
Query: 1 QEEIANFRPTAEHLDYPAVLERARAREDAAAKTLTAPKAETPTVEPPPGSVYSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMKRAAITISGGVINRSVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDE 666
+E++A PT LDYPA LERA A TA A+ +++WYPPLR+TL+VLSK+YR+V VFEDLAQ A ++ AA+ I+ + +D LFLIKHLL +REQLTPF IQF+ E L+F +T A F+ L A L+ D +P I+E
Sbjct: 97 EEDVALHEPTDAELDYPATLERAAA--------ATAGGADP----------FASWYPPLRATLMVLSKIYRSVGRAVFEDLAQQACLVTTHALAGAAVRITAK-------------------------------------------QSEIDGDLFLIKHLLIMREQLTPFDIQFLTVEKHLDFTATAAAFANFLARPTQLLS---PGAFLQFAQDGLPRINE 254
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Match: A0A7S4D880_HETAK (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D880_HETAK) HSP 1 Score: 100 bits (249), Expect = 8.040e-21 Identity = 75/222 (33.78%), Postives = 100/222 (45.05%), Query Frame = 1
Query: 1 QEEIANFRPTAEHLDYPAVLERARAREDAAAKTLTAPKAETPTVEPPPGSVYSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMKRAAITISGGVINRSVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDE 666
+E++A PT LDYPA LERA A TA A+ +++WYPPLR+TL+VLSK+YR+V VFEDLAQ A ++ AA+ I+ + +D LFLIKHLL +REQLTPF IQF+ E L+F +T A F+ L A L+ D +P I+E
Sbjct: 97 EEDVALHEPTDAELDYPATLERAAA--------ATAGGADP----------FASWYPPLRATLMVLSKIYRSVGRAVFEDLAQQACLVTTHALAGAAVRITAK-------------------------------------------QSEIDGDLFLIKHLLIMREQLTPFDIQFLTVEKHLDFTATAAAFANFLARPTQLLS---PGAFLQFAQDGLPRINE 254
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Match: A0A250WPT6_9CHLO (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WPT6_9CHLO) HSP 1 Score: 100 bits (249), Expect = 1.050e-20 Identity = 78/238 (32.77%), Postives = 122/238 (51.26%), Query Frame = 1
Query: 1 QEEIANFRPTAEHLDYPAVLERARAREDA-------AAKTLTAPKA------ETPTVEPPPGSV-YSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMKRAAITISGGVINRSVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDEFQ 672
+EE+++F+P+AE LD+P L+RA DA +++ AP+A ++ V+ PG + Y+ Y P++STL+ LSK+YRAVD +F LAQ AV+AC S+++AA R VA + G LDAQLF I+HLL LREQ+ PF ++F ++ L+F R +R+ + SLF LS NA++++ P + ++
Sbjct: 509 KEEVSSFQPSAEDLDFPGKLQRAVVAADAENLNGYNVQESVVAPEAGQSNGHDSNGVDKSPGQIAYTLMYLPVQSTLMCLSKLYRAVDARIFSGLAQEAVSACTLSIQQAA---------RMVAQRA----------------------------------GPLDAQLFTIRHLLFLREQIAPFDVEFSASDIDLDFSHMRDHMRRILSGEVSLFALSSSNAVVKMLGTGGPRVLHYR 703
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Match: A0A067L2S6_JATCU (Conserved oligomeric Golgi complex subunit 3 n=2 Tax=Jatropha curcas TaxID=180498 RepID=A0A067L2S6_JATCU) HSP 1 Score: 99.0 bits (245), Expect = 3.500e-20 Identity = 76/209 (36.36%), Postives = 102/209 (48.80%), Query Frame = 1
Query: 1 QEEIANFRPTAEHLDYPAVLERARAREDAAAKTLTAPKAETPTVEPPPGSVYSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMKRAAITISGGVINRSVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNAL 627
++EIAN+ P+ E LDYPA LER+ A AKT + ET V++TWYPPL TL +LSK+YR ++ VF LAQ AV C+ S+++A S V ++ A+ D QLFLIKHLL LREQ+ PF I+F +L+F LR+ +R SLF SR +L
Sbjct: 464 RDEIANYIPSDEDLDYPAKLERS-----AEAKTESTSVEET-------ADVFTTWYPPLEKTLSILSKLYRCLESSVFTGLAQEAVEVCSFSIQKA----SKLVAKKTTAM---------------------------------------DGQLFLIKHLLILREQIAPFDIEFSVTYKELDFSHLLEHLRRILRGQTSLFDWSRSTSL 617 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig75210.15202.1 >prot_H-elongata_contig75210.15202.1 ID=prot_H-elongata_contig75210.15202.1|Name=mRNA_H-elongata_contig75210.15202.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp QEEIANFRPTAEHLDYPAVLERARAREDAAAKTLTAPKAETPTVEPPPGSback to top mRNA from alignment at H-elongata_contig75210:623..2944+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig75210.15202.1 ID=mRNA_H-elongata_contig75210.15202.1|Name=mRNA_H-elongata_contig75210.15202.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2322bp|location=Sequence derived from alignment at H-elongata_contig75210:623..2944+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig75210:623..2944+ >mRNA_H-elongata_contig75210.15202.1 ID=mRNA_H-elongata_contig75210.15202.1|Name=mRNA_H-elongata_contig75210.15202.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1368bp|location=Sequence derived from alignment at H-elongata_contig75210:623..2944+ (Himanthalia elongata Himel1 dioecious)back to top |