mRNA_H-elongata_contig75210.15202.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75210.15202.1
Unique NamemRNA_H-elongata_contig75210.15202.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Match: D7G064_ECTSI (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G064_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 4.530e-70
Identity = 153/237 (64.56%), Postives = 168/237 (70.89%), Query Frame = 1
Query:    1 QEEIANFRPTAEHLDYPAVLERAR---AREDAAAKTLTAPKAETPTVEPPPGS------VYSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMKRAAITISGGVINRSVALS--SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDEFQAR 678
            Q++IA+FRPT E LDYP +L RA       D+     T P  + P+   PP S       Y+TWYPPLRSTL VLSKVYRAVDMGVFEDLAQL+VAACAES+K+AA++IS GV   S      S                     XXXXXXXXX  GEGGLDAQLFLIKHLLTLREQLTPFHIQFV AE KLNFGSTRMALRKFIRHTP+LFRLS KNAL+ELTVDSIPTIDE QAR
Sbjct:  600 QDDIASFRPTPEDLDYPGMLLRAAKGGGTGDSLVNARTGP-GDQPSPSSPPSSGKGSAPAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLKKAAVSISAGVTAGSAPSPPVSSGGGGRGAPGGALAGGSVVPRXXXXXXXXXGSGEGGLDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGSTRMALRKFIRHTPALFRLSSKNALVELTVDSIPTIDEVQAR 835          
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Match: A0A835YUG6_9STRA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG6_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.300e-27
Identity = 87/228 (38.16%), Postives = 115/228 (50.44%), Query Frame = 1
Query:    1 QEEIANFRPTAE--HLDYPAVLERARAREDAAAKTLTAPKAETPTVEPPPGSVYSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMKRAAITISGGVINRSVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTP--SLFRLSRKNALLELTVDSIPTIDEFQ 672
            Q ++A FRP  +   LDYPAVL RA A   AA                     Y TWYPP+R  LLVLSK+YR VDMGVFED+A       AE+++  A+T +     R+VA  +                                    LD  LFL+KHLLTLREQL PF I F+R + KLNF +T  ALR+  + +   +LFRLS +N L++   +S+P +DE +
Sbjct:  730 QRDVAQFRPREDGADLDYPAVLSRASAAAIAA---------------------YDTWYPPMRVGLLVLSKIYRVVDMGVFEDIA-------AETVR--AVTAALVAAGRAVAAHA----------------------------------SSLDGHLFLVKHLLTLREQLEPFDISFMRNDRKLNFSTTVSALRRLAQPSSGLALFRLSMQNVLIQTAKNSLPAVDEVE 893          
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Match: A0A7S2SLN9_9STRA (Conserved oligomeric Golgi complex subunit 3 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLN9_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.360e-24
Identity = 67/173 (38.73%), Postives = 89/173 (51.45%), Query Frame = 1
Query:  148 SVYSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMKRAAITISGGVINRSVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDE 666
            ++Y+ WYPPLRSTL++LSK+Y AV+  VFEDLA   V  C + +  AA  +S                                              G  D  LFLIKHLLTLREQLTPF I F + + +L+F STR AL +F+     +F ++R+NALL L  D +P +DE
Sbjct:   13 ALYAGWYPPLRSTLILLSKIYHAVENSVFEDLAGETVGLCTDVLGAAASRVSSL-------------------------------------------HGSEDGDLFLIKHLLTLREQLTPFDINFSQLKRRLDFSSTRQALSRFMAERGRVFAMTRQNALLSLAKDGLPQVDE 142          
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Match: W7U7M5_9STRA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U7M5_9STRA)

HSP 1 Score: 108 bits (271), Expect = 4.970e-24
Identity = 66/172 (38.37%), Postives = 91/172 (52.91%), Query Frame = 1
Query:  151 VYSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMKRAAITISGGVINRSVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDE 666
            VY+TW+P L+ TL +LSK+YRAV++ VF+++AQ A+AAC  S   AA  +                                              +G +DA LFL+KHLL LREQL PF I+F   E +L+F STR AL +F     +LFR+   NALL L + S+PT++E
Sbjct:  105 VYATWFPTLQMTLSLLSKIYRAVELHVFQEMAQQALAACTYSFLAAAKVLR-------------------------------------------EQKGDMDADLFLVKHLLILREQLVPFDIEFAAIEKRLDFNSTRGALTRFFVDRHNLFRMGTDNALLSLALGSVPTVNE 233          
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Match: A0A6H5JQ09_9PHAE (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ09_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.140e-23
Identity = 61/103 (59.22%), Postives = 72/103 (69.90%), Query Frame = 1
Query:    1 QEEIANFRPTAEHLDYPAVLERARAREDAAAKTLTAPKA---ETPTVEPPPGSV------YSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMK 282
            Q++IA+FRPT E LDYP +L RA AR    +  L   +    + P+   PP S       Y+TWYPPLRSTL VLSKVYRAVDMGVFEDLAQL+VAACAES+K
Sbjct:    7 QDDIASFRPTPEDLDYPGMLLRA-ARGGGTSDGLVNARTGAGDQPSPSSPPSSTKGSAPAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLK 108          
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Match: A0A1Y1IEB9_KLENI (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IEB9_KLENI)

HSP 1 Score: 101 bits (252), Expect = 4.120e-21
Identity = 71/224 (31.70%), Postives = 104/224 (46.43%), Query Frame = 1
Query:    1 QEEIANFRPTAEHLDYPAVLERARAREDAAAKTLTAPKAETPTVEPPPGSVYSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMKRAAITISGGVINRSVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDEFQ 672
            ++EIAN+ PT + LDYPA LE+  + +    +   A +             Y+TWYPPL  TL  LSK+YR VD  +F  LAQ A++ C+ S++RA         ++S+A  +                                  G LD QLF++KHLL LREQ+ PF I F     +L+F      +R+ +R   S+F  S  N L+ +     P + E Q
Sbjct:  474 RDEIANYNPTPDDLDYPAKLEKVPSTQSEIQEEGAAGEDGQ--------DAYTTWYPPLERTLSCLSKLYRCVDHNIFTGLAQEAISLCSMSIQRA---------SKSIAKKA----------------------------------GSLDGQLFVVKHLLILREQIAPFDIDFAVTYKELDFSHMLEHMRRILRGQASIFAFSSSNGLVRVLSSGAPRVVENQ 646          
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Match: A0A7S3XWF7_HETAK (Conserved oligomeric Golgi complex subunit 3 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWF7_HETAK)

HSP 1 Score: 100 bits (249), Expect = 4.400e-21
Identity = 75/222 (33.78%), Postives = 100/222 (45.05%), Query Frame = 1
Query:    1 QEEIANFRPTAEHLDYPAVLERARAREDAAAKTLTAPKAETPTVEPPPGSVYSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMKRAAITISGGVINRSVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDE 666
            +E++A   PT   LDYPA LERA A         TA  A+           +++WYPPLR+TL+VLSK+YR+V   VFEDLAQ A      ++  AA+ I+                                             +  +D  LFLIKHLL +REQLTPF IQF+  E  L+F +T  A   F+     L       A L+   D +P I+E
Sbjct:   97 EEDVALHEPTDAELDYPATLERAAA--------ATAGGADP----------FASWYPPLRATLMVLSKIYRSVGRAVFEDLAQQACLVTTHALAGAAVRITAK-------------------------------------------QSEIDGDLFLIKHLLIMREQLTPFDIQFLTVEKHLDFTATAAAFANFLARPTQLLS---PGAFLQFAQDGLPRINE 254          
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Match: A0A7S4D880_HETAK (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D880_HETAK)

HSP 1 Score: 100 bits (249), Expect = 8.040e-21
Identity = 75/222 (33.78%), Postives = 100/222 (45.05%), Query Frame = 1
Query:    1 QEEIANFRPTAEHLDYPAVLERARAREDAAAKTLTAPKAETPTVEPPPGSVYSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMKRAAITISGGVINRSVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDE 666
            +E++A   PT   LDYPA LERA A         TA  A+           +++WYPPLR+TL+VLSK+YR+V   VFEDLAQ A      ++  AA+ I+                                             +  +D  LFLIKHLL +REQLTPF IQF+  E  L+F +T  A   F+     L       A L+   D +P I+E
Sbjct:   97 EEDVALHEPTDAELDYPATLERAAA--------ATAGGADP----------FASWYPPLRATLMVLSKIYRSVGRAVFEDLAQQACLVTTHALAGAAVRITAK-------------------------------------------QSEIDGDLFLIKHLLIMREQLTPFDIQFLTVEKHLDFTATAAAFANFLARPTQLLS---PGAFLQFAQDGLPRINE 254          
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Match: A0A250WPT6_9CHLO (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WPT6_9CHLO)

HSP 1 Score: 100 bits (249), Expect = 1.050e-20
Identity = 78/238 (32.77%), Postives = 122/238 (51.26%), Query Frame = 1
Query:    1 QEEIANFRPTAEHLDYPAVLERARAREDA-------AAKTLTAPKA------ETPTVEPPPGSV-YSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMKRAAITISGGVINRSVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDEFQ 672
            +EE+++F+P+AE LD+P  L+RA    DA         +++ AP+A      ++  V+  PG + Y+  Y P++STL+ LSK+YRAVD  +F  LAQ AV+AC  S+++AA         R VA  +                                  G LDAQLF I+HLL LREQ+ PF ++F  ++  L+F   R  +R+ +    SLF LS  NA++++     P +  ++
Sbjct:  509 KEEVSSFQPSAEDLDFPGKLQRAVVAADAENLNGYNVQESVVAPEAGQSNGHDSNGVDKSPGQIAYTLMYLPVQSTLMCLSKLYRAVDARIFSGLAQEAVSACTLSIQQAA---------RMVAQRA----------------------------------GPLDAQLFTIRHLLFLREQIAPFDVEFSASDIDLDFSHMRDHMRRILSGEVSLFALSSSNAVVKMLGTGGPRVLHYR 703          
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Match: A0A067L2S6_JATCU (Conserved oligomeric Golgi complex subunit 3 n=2 Tax=Jatropha curcas TaxID=180498 RepID=A0A067L2S6_JATCU)

HSP 1 Score: 99.0 bits (245), Expect = 3.500e-20
Identity = 76/209 (36.36%), Postives = 102/209 (48.80%), Query Frame = 1
Query:    1 QEEIANFRPTAEHLDYPAVLERARAREDAAAKTLTAPKAETPTVEPPPGSVYSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMKRAAITISGGVINRSVALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNAL 627
            ++EIAN+ P+ E LDYPA LER+     A AKT +    ET         V++TWYPPL  TL +LSK+YR ++  VF  LAQ AV  C+ S+++A    S  V  ++ A+                                       D QLFLIKHLL LREQ+ PF I+F     +L+F      LR+ +R   SLF  SR  +L
Sbjct:  464 RDEIANYIPSDEDLDYPAKLERS-----AEAKTESTSVEET-------ADVFTTWYPPLEKTLSILSKLYRCLESSVFTGLAQEAVEVCSFSIQKA----SKLVAKKTTAM---------------------------------------DGQLFLIKHLLILREQIAPFDIEFSVTYKELDFSHLLEHLRRILRGQTSLFDWSRSTSL 617          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75210.15202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G064_ECTSI4.530e-7064.56Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A835YUG6_9STRA1.300e-2738.16Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A7S2SLN9_9STRA1.360e-2438.73Conserved oligomeric Golgi complex subunit 3 n=2 T... [more]
W7U7M5_9STRA4.970e-2438.37Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A6H5JQ09_9PHAE1.140e-2359.22Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A1Y1IEB9_KLENI4.120e-2131.70Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A7S3XWF7_HETAK4.400e-2133.78Conserved oligomeric Golgi complex subunit 3 (Frag... [more]
A0A7S4D880_HETAK8.040e-2133.78Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A250WPT6_9CHLO1.050e-2032.77Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A067L2S6_JATCU3.500e-2036.36Conserved oligomeric Golgi complex subunit 3 n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75210contigH-elongata_contig75210:623..2944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score242.7
Seed ortholog evalue1.7e-61
Seed eggNOG ortholog2880.D7G064
Preferred nameCOG3
KEGG koko:K20290
GOsGO:0000003,GO:0000139,GO:0000280,GO:0000910,GO:0003006,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006403,GO:0006464,GO:0006486,GO:0006807,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0006996,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008406,GO:0008565,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009887,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016192,GO:0017119,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030334,GO:0031090,GO:0031647,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033206,GO:0033227,GO:0033365,GO:0034613,GO:0034645,GO:0035262,GO:0036211,GO:0040012,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045184,GO:0046907,GO:0048193,GO:0048232,GO:0048285,GO:0048513,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050821,GO:0051179,GO:0051234,GO:0051236,GO:0051270,GO:0051301,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0061458,GO:0061640,GO:0065007,GO:0065008,GO:0070085,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0098588,GO:0098791,GO:0099023,GO:0140013,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903046,GO:2000145
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG2604@1,KOG2604@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConserved oligomeric Golgi complex, subunit 3
Ec32 orthologEc-05_003960.1
Exons3
Model size684
Cds size684
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75210.15202.1prot_H-elongata_contig75210.15202.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75210 623..2944 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.3495712-CDS-H-elongata_contig75210:622..9041622931157.3495712-CDS-H-elongata_contig75210:622..904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75210 623..904 +
1691679721.8212702-CDS-H-elongata_contig75210:622..9041691679721.8212702-CDS-H-elongata_contig75210:622..904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75210 623..904 +
1622931157.367331-CDS-H-elongata_contig75210:2035..23131622931157.367331-CDS-H-elongata_contig75210:2035..2313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75210 2036..2313 +
1691679721.8467102-CDS-H-elongata_contig75210:2035..23131691679721.8467102-CDS-H-elongata_contig75210:2035..2313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75210 2036..2313 +
1622931157.3862839-CDS-H-elongata_contig75210:2820..29441622931157.3862839-CDS-H-elongata_contig75210:2820..2944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75210 2821..2944 +
1691679721.8601394-CDS-H-elongata_contig75210:2820..29441691679721.8601394-CDS-H-elongata_contig75210:2820..2944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75210 2821..2944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75210.15202.1

>prot_H-elongata_contig75210.15202.1 ID=prot_H-elongata_contig75210.15202.1|Name=mRNA_H-elongata_contig75210.15202.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp
QEEIANFRPTAEHLDYPAVLERARAREDAAAKTLTAPKAETPTVEPPPGS
VYSTWYPPLRSTLLVLSKVYRAVDMGVFEDLAQLAVAACAESMKRAAITI
SGGVINRSVALSSGGGGAGGTRRSVAVAAAAGVSVGGGGDSIAGGGEGGL
DAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSL
FRLSRKNALLELTVDSIPTIDEFQARV*
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mRNA from alignment at H-elongata_contig75210:623..2944+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75210.15202.1 ID=mRNA_H-elongata_contig75210.15202.1|Name=mRNA_H-elongata_contig75210.15202.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2322bp|location=Sequence derived from alignment at H-elongata_contig75210:623..2944+ (Himanthalia elongata Himel1 dioecious)
CAGGAGGAGATCGCGAATTTCCGACCCACGGCCGAGCATCTCGACTATCC GGCCGTGCTCGAACGTGCGAGAGCCCGAGAAGACGCAGCGGCGAAGACAC TCACAGCACCGAAGGCGGAGACGCCGACGGTCGAGCCCCCTCCTGGATCT GTCTATTCCACGTGGTACCCCCCTTTGCGGTCCACCCTCCTTGTGCTGAG CAAGGTATATCGGGCGGTGGACATGGGTGTCTTCGAAGACCTGGCGCAGC TGGCGGTAGCGGCGTGCGCGGAATCGATGAAGGTTGGACAAGGAGGCGTG TGTCTGGGGGGAGCGGGGGGAAGGGTTGTGTGGCAGCTCCTTTCGTAGTT TAGTGTTTGGAGAGCTAGTTCCTTCTTTCCAATGCAAAACTAGAGAAAGG ACATAATATGATTATGAGCCGTGTCGTCTTTCGAGCCCCCCACACTGTTC ATAAGAGTACTGTGTCCCCCTACACCGTTTAAAATAGCCCCGTCCCTCTT CTTTCCAGTATGAACGTTTTTGACCTTGTATTTATTATGTAAATAGATTC GTAAATATTTTTCTTAAAAATGCCTATGAACTCATTCAAATCCTCCGAAC ATCCACGCCTTCTCTTTTATCCATAAAAGTGTATTCTTACATTTATTTTC TAGATACATGCACTGTATAGCCTCTAGATGTGTACCTGTATATTATAGTT ATATAGGGAGTGTTTTTGTAGAAGATAAAATAAATGTCTACCCTACGCAG ATGTCGAGTAGCTTGCGACGTTCTTTAGTGCTTTCCGTGCGCTGGATAGG AAACATAATATAGAGGGGAGTTCCATTTTCATTTCCTTTTGCGTCCTCGG GGGTATATTCCCTCCCCCCCTCCCCTTCACCCCTATCCCATATATTAAGG GCCATTTTGATTCTTTTTTTTTATGAGCAAGAGTCTAGACTGGGAGGGGT TATGTGCAAACCGGTGCGGCGCCCCCTTAGGTGTCATGCCGATTTGCGCG GTCTAATGTAATGTAAATCGATAAAAAGGAGAAATCGCGATCTCCATGCC TTTGTATTTATATAATTCGTTTTTATCTTTTCCCGATTTTTCTCCCCATT TTTTTACTCGCGTTGGAACCATCGTAGAAAAAGCGGAAAAATGCTGGAAC TCCCCCTCCTCCCCGCCCCCAGTAGTAGCTAGTATTAATATTTTTATTAG AGTGTAGCCGGCAGCGGTAAGCGAGGTAGCTGTTTTCACTTTCATTTATT ATGAGAAATAGAAGAAGAGTGTCCAGCGTCAAATCATCTCGAGGCTAGAC GGAGATTTGCCTCCCAGGGATTCAGTTGAAAACAAGGGGGCCCCGTTGTT TTTTTTTGTGTGGGGCTGCTCAGAAGCACCCCCTCCCTCTCTCTCTCTCT GTTCATCTCTCAGCGGGCGGCGATCACGATCAGCGGGGGCGTTATTAATC GTTCGGTGGCGTTGTCTTCTGGTGGAGGAGGAGCAGGAGGCACGCGGCGC AGCGTGGCAGTGGCGGCGGCAGCCGGGGTTTCCGTCGGTGGAGGCGGTGA TAGCATAGCAGGCGGGGGAGAGGGCGGTCTCGATGCCCAGCTGTTCTTGA TCAAGCACCTGCTGACCCTAAGGGAGCAGCTGACGCCGTTCCACATTCAG TTTGTGAGGGCGGAACATAAGCTCAACTTCGGCTCTACTAGGTTTGTCGT TTGTCGTGAGGGTGTGCGGGTGCGAGTGGGTGTCCGCGCGGGGAGGGCGG TTCTGCAGAGGGGGGTGCGTGCGTTTATTAGAGGGGGCGGTGGGTAGGAG AAGGTGCGCTCGAAGTGAAAAAATGATATTCACCCAGTGGCGAGACGCGT GAGGACAGAACGCGGACCAATCGCCCGTCGGAATCGAACCGGCCCAAACC AAAGTTTGATGTGACAGCGCTAGCGAAACCGGACGAAATCGAACCGAACC GAACCGAATCGATCCGATCCACGGAGTGGAAGAAACGATCTTAATTTCCA AAATTAATCAGATGATGAACGTGTACCTCCACCAACCGAAATCAACCGAA ACGATGCGTGTTGTCTTGTGTGTTGTGTATGTTTTGGTACCTTTAGCATG GAGTAAACGGGTACAGTAGGGCACAGTAGGGGGATTTTGACACCGCCGTG GACGCCTGCTCCCTCCCCCTTCCCCTCCTCCGACTAACTGTATTACAGAA TGGCTTTGAGGAAGTTCATCAGGCACACCCCGTCCCTGTTCCGCCTGTCT CGCAAGAATGCTCTTCTCGAGCTGACAGTCGACAGCATCCCCACAATCGA CGAGTTCCAGGCGCGTGTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig75210:623..2944+

>mRNA_H-elongata_contig75210.15202.1 ID=mRNA_H-elongata_contig75210.15202.1|Name=mRNA_H-elongata_contig75210.15202.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1368bp|location=Sequence derived from alignment at H-elongata_contig75210:623..2944+ (Himanthalia elongata Himel1 dioecious)
CAGGAGGAGATCGCGAATTTCCGACCCACGGCCGAGCATCTCGACTATCC
GGCCGTGCTCGAACGTGCGAGAGCCCGAGAAGACGCAGCGGCGAAGACAC
TCACAGCACCGAAGGCGGAGACGCCGACGGTCGAGCCCCCTCCTGGATCT
GTCTATTCCACGTGGTACCCCCCTTTGCGGTCCACCCTCCTTGTGCTGAG
CAAGGTATATCGGGCGGTGGACATGGGTGTCTTCGAAGACCTGGCGCAGC
TGGCGGTAGCGGCGTGCGCGGAATCGATGAAGCAGGAGGAGATCGCGAAT
TTCCGACCCACGGCCGAGCATCTCGACTATCCGGCCGTGCTCGAACGTGC
GAGAGCCCGAGAAGACGCAGCGGCGAAGACACTCACAGCACCGAAGGCGG
AGACGCCGACGGTCGAGCCCCCTCCTGGATCTGTCTATTCCACGTGGTAC
CCCCCTTTGCGGTCCACCCTCCTTGTGCTGAGCAAGGTATATCGGGCGGT
GGACATGGGTGTCTTCGAAGACCTGGCGCAGCTGGCGGTAGCGGCGTGCG
CGGAATCGATGAAGCGGGCGGCGATCACGATCAGCGGGGGCGTTATTAAT
CGTTCGGTGGCGTTGTCTTCTGGTGGAGGAGGAGCAGGAGGCACGCGGCG
CAGCGTGGCAGTGGCGGCGGCAGCCGGGGTTTCCGTCGGTGGAGGCGGTG
ATAGCATAGCAGGCGGGGGAGAGGGCGGTCTCGATGCCCAGCTGTTCTTG
ATCAAGCACCTGCTGACCCTAAGGGAGCAGCTGACGCCGTTCCACATTCA
GTTTGTGAGGGCGGAACATAAGCTCAACTTCGGCTCTACTAGCGGGCGGC
GATCACGATCAGCGGGGGCGTTATTAATCGTTCGGTGGCGTTGTCTTCTG
GTGGAGGAGGAGCAGGAGGCACGCGGCGCAGCGTGGCAGTGGCGGCGGCA
GCCGGGGTTTCCGTCGGTGGAGGCGGTGATAGCATAGCAGGCGGGGGAGA
GGGCGGTCTCGATGCCCAGCTGTTCTTGATCAAGCACCTGCTGACCCTAA
GGGAGCAGCTGACGCCGTTCCACATTCAGTTTGTGAGGGCGGAACATAAG
CTCAACTTCGGCTCTACTAGAATGGCTTTGAGGAAGTTCATCAGGCACAC
CCCGTCCCTGTTCCGCCTGTCTCGCAAGAATGCTCTTCTCGAGCTGACAG
TCGACAGCATCCCCACAATCGACGAGTTCCAGGCGCGTGTATGAAATGGC
TTTGAGGAAGTTCATCAGGCACACCCCGTCCCTGTTCCGCCTGTCTCGCA
AGAATGCTCTTCTCGAGCTGACAGTCGACAGCATCCCCACAATCGACGAG
TTCCAGGCGCGTGTATGA
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