prot_H-elongata_contig74989.15178.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig74989.15178.1
Unique Nameprot_H-elongata_contig74989.15178.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length84
Homology
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BLAST of mRNA_H-elongata_contig74989.15178.1 vs. uniprot
Match: D8LGR2_ECTSI (Ribosomal protein L25, Ctc-form n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGR2_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 3.190e-30
Identity = 54/80 (67.50%), Postives = 66/80 (82.50%), Query Frame = 0 
Query:    1 RLKTHQHIHLPDNPEKVPRWLYLDLEFVQSGSKLRVSDIIIPDGIRFFRGNESDMWNEIVCTIKGRKMLSY--SGGTDEE 78
            RLKTHQHI LP++PE VP+WLYLDLEFV+SGSKLRVSD+++P+GI   R NE  MWNE+VCTIKGRK+ +   S G DE+
Sbjct:  206 RLKTHQHILLPEDPEMVPKWLYLDLEFVRSGSKLRVSDLMMPEGILLHRANEPGMWNEVVCTIKGRKVFASGDSAGDDED 285
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74989.15178.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGR2_ECTSI3.190e-3067.50Ribosomal protein L25, Ctc-form n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74989contigH-elongata_contig74989:68..1183 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74989.15178.1mRNA_H-elongata_contig74989.15178.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig74989 68..1183 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig74989.15178.1 ID=prot_H-elongata_contig74989.15178.1|Name=mRNA_H-elongata_contig74989.15178.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
RLKTHQHIHLPDNPEKVPRWLYLDLEFVQSGSKLRVSDIIIPDGIRFFRG
NESDMWNEIVCTIKGRKMLSYSGGTDEENEDKE*
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