mRNA_H-elongata_contig119698.1518.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Match: D8LB19_ECTSI (Similar to RING finger protein 122 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB19_ECTSI) HSP 1 Score: 208 bits (530), Expect = 2.780e-59 Identity = 118/193 (61.14%), Postives = 142/193 (73.58%), Query Frame = 1
Query: 1 DPNQAAAQRLAKLEQDALARGDELLALSLAAREEARVERHASRGRVHRRSRRSS------PLVLNAAT---AAAVATGGQVSDAVLALQFQDIDANDFETLLTLDEQGGFGGRTCGGGRGLSEKAVEDLLRSGKAAAGGLEENCAICLVGFELGEEIATLPCRHTFHDKCIRKWLLMRNRCPTDMQPVVPDSP 552
D ++AAA+R AK EQ+A AR DELLAL LAAREEA ER ASR RV RRS SS P ++ + A A A GG +SDAV ALQFQDID NDFETLL LDE GG GGR C GG+GL+++A+E +L++GKAA LEE+CA+C+ F LG+EI+ LPC H FH CIRKWLLMRNRCPT ++ V+PDSP
Sbjct: 773 DEDEAAARRFAKQEQEAQAREDELLALRLAAREEAGAERRASRRRVQRRSNASSARRNSIPGYISPDSNHPAVASAAGGNLSDAVRALQFQDIDENDFETLLALDEAGGEGGRCCAGGKGLADEAMEAVLQTGKAAGARLEESCAVCMEEFGLGDEISVLPCLHAFHGACIRKWLLMRNRCPTCLKAVIPDSP 965
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Match: A0A6H5L8B3_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8B3_9PHAE) HSP 1 Score: 160 bits (404), Expect = 4.440e-42 Identity = 75/113 (66.37%), Postives = 90/113 (79.65%), Query Frame = 1
Query: 214 VSDAVLALQFQDIDANDFETLLTLDEQGGFGGRTCGGGRGLSEKAVEDLLRSGKAAAGGLEENCAICLVGFELGEEIATLPCRHTFHDKCIRKWLLMRNRCPTDMQPVVPDSP 552
VSDA+ ALQFQDID NDFETLL LDE GG GGR C GG+GL+E+A+E L++G AA LEE+CA+C+ F LG+EI+ LPC H FH CIRKWLLMRNRCPT ++ V+PDSP
Sbjct: 856 VSDAIRALQFQDIDENDFETLLALDEAGGEGGRCCAGGKGLAEEAMEAALQAGTAAGARLEESCAVCMEEFGLGDEISVLPCLHAFHGACIRKWLLMRNRCPTCLKAVIPDSP 968
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Match: A0A6U1H468_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A6U1H468_9CHLO) HSP 1 Score: 67.4 bits (163), Expect = 3.490e-10 Identity = 34/95 (35.79%), Postives = 49/95 (51.58%), Query Frame = 1
Query: 241 FQDIDANDFETLLTLDEQGGFGGRTCGGGRGLSEKAVEDLLRSGKAAAGGLEEN--CAICLVGFELGEEIATLPCRHTFHDKCIRKWLLMRNRCP 519
+ D+D +E LL + E G R G S+ A++ L + G EE CA+C + FE G++ ATLPC H +H CI +WL + CP
Sbjct: 167 YPDVDQMSYEALLAVGEMAGHVSR------GASDAALKTLKMGCYSRCGSAEEEEQCAVCRMEFETGDDTATLPCSHFYHPDCINQWLKINKACP 255
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Match: A0A1Y1WMH7_9FUNG (RING-type domain-containing protein (Fragment) n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WMH7_9FUNG) HSP 1 Score: 63.9 bits (154), Expect = 3.830e-10 Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 1
Query: 337 SEKAVEDL-LRSGKAAAGGLEENCAICLVGFELGEEIATLPCRHTFHDKCIRKWLLMRNRCP 519
SE A+++L LR+ G +E+C+IC ++ GEE+ LPC+H FHD+CI+ WL + CP
Sbjct: 34 SEDAIKELRLRAVTGEEAGRKEDCSICQDEYKQGEEVVELPCKHLFHDECIKHWLNVNGTCP 95
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Match: A0A075B2Q6_ROZAC (RING-type domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B2Q6_ROZAC) HSP 1 Score: 65.5 bits (158), Expect = 2.080e-9 Identity = 32/79 (40.51%), Postives = 45/79 (56.96%), Query Frame = 1
Query: 328 RGLSEKAVEDLLRSGKAAAGGLEENC---------AICLVGFELGEEIATLPCRHTFHDKCIRKWLLMRNRCPTDMQPV 537
RG +K +++L + K G L E C +ICLV +E+GE+I LPC+H FH KC+ WL M CP +QP+
Sbjct: 209 RGADQKHIDNLPKC-KFKQGQLPEGCEIKEEDNLCSICLVNYEIGEDIRFLPCKHHFHIKCVDTWLKMNKTCPLCVQPI 286
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Match: UPI00109F7253 (E3 ubiquitin-protein ligase MBR2 isoform X2 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI00109F7253) HSP 1 Score: 64.7 bits (156), Expect = 5.710e-9 Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 1
Query: 247 DIDANDFETLLTLDEQGGFGGRTCGGGRGLSEKAVEDLLRSGKAAAGGLEENCAICLVGFELGEEIATLPCRHTFHDKCIRKWLLMRNRCP 519
DID +E L+ L E+ G + G G K + + S E +C ICL ++ G+ I L CRH FH +CI+KWLL++N CP
Sbjct: 279 DIDNMSYEELVDLGER--IGNVSTGLSGGDMAKCLTSAIYSSGVIQDVDEGSCVICLEEYKEGQSIGRLNCRHDFHSRCIKKWLLIKNACP 367
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Match: UPI000C1D6D6B (E3 ubiquitin-protein ligase MBR2-like isoform X1 n=2 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D6D6B) HSP 1 Score: 64.7 bits (156), Expect = 7.020e-9 Identity = 34/94 (36.17%), Postives = 49/94 (52.13%), Query Frame = 1
Query: 247 DIDANDFETLLTLDEQGGFGGRTCGGGRGLSEKAVEDLLRSGKAAAGGLEEN---CAICLVGFELGEEIATLPCRHTFHDKCIRKWLLMRNRCP 519
D+D +E LL L+EQ G GLSE+ + + K G N C IC + G++I L C+H FH KCI++WL+++N CP
Sbjct: 619 DVDNMSYEELLALEEQIG------NVSTGLSEEKILGSMEHRKYEPFGFSSNFEPCCICQEDYIAGDDIGILDCKHEFHTKCIKQWLMLKNLCP 706
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Match: A0A835G1A5_9POAL (RING-type domain-containing protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835G1A5_9POAL) HSP 1 Score: 63.2 bits (152), Expect = 8.760e-9 Identity = 35/84 (41.67%), Postives = 45/84 (53.57%), Query Frame = 1
Query: 295 GGFGG--RTCGGGRGLSEKAVEDLLRSGKAAAGGLEENCAICLVGFELGEEIATLPC--RHTFHDKCIRKWLLMRNRCPTDMQP 534
GGFGG + GL ++ + AGG CAICL GF+ GEE++ +PC RH FH CI KWL+ N CP + P
Sbjct: 151 GGFGGVPASAAAMAGLDKQTFR---ATAGGCAGGGGTGCAICLEGFDDGEEVSVMPCSHRHGFHPVCITKWLIRSNMCPVCLPP 231
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Match: A0A7E4VT43_PANRE (RING-type domain-containing protein n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4VT43_PANRE) HSP 1 Score: 62.8 bits (151), Expect = 9.170e-9 Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1
Query: 394 EENCAICLVGFELGEEIATLPCRHTFHDKCIRKWLLMRNRCPTDMQPV 537
E+ CAIC++ FEL ++I LPCRHT+H +CI WL CP+ M+PV
Sbjct: 132 EDECAICMIDFELEDQIRRLPCRHTYHVQCIDDWLQRSFTCPSCMEPV 179
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Match: A0A7S2IHT6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2IHT6_9DINO) HSP 1 Score: 61.2 bits (147), Expect = 1.590e-8 Identity = 24/51 (47.06%), Postives = 31/51 (60.78%), Query Frame = 1
Query: 376 AAAGGLEENCAICLVGFELGEEIATLPCRHTFHDKCIRKWLLMRNRCPTDM 528
A A G C +C+ F+ G+E+A LPC H+FH +CI WL NRCP M
Sbjct: 115 AGAEGFNTRCVVCIADFDEGDELARLPCAHSFHCQCIEPWLRKNNRCPLCM 165 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig119698.1518.1 >prot_H-elongata_contig119698.1518.1 ID=prot_H-elongata_contig119698.1518.1|Name=mRNA_H-elongata_contig119698.1518.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=184bp DPNQAAAQRLAKLEQDALARGDELLALSLAAREEARVERHASRGRVHRRSback to top mRNA from alignment at H-elongata_contig119698:389..1312+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig119698.1518.1 ID=mRNA_H-elongata_contig119698.1518.1|Name=mRNA_H-elongata_contig119698.1518.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=924bp|location=Sequence derived from alignment at H-elongata_contig119698:389..1312+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig119698:389..1312+ >mRNA_H-elongata_contig119698.1518.1 ID=mRNA_H-elongata_contig119698.1518.1|Name=mRNA_H-elongata_contig119698.1518.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1104bp|location=Sequence derived from alignment at H-elongata_contig119698:389..1312+ (Himanthalia elongata Himel1 dioecious)back to top |