mRNA_H-elongata_contig7489.15166.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7489.15166.1 vs. uniprot
Match: D7FI79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI79_ECTSI) HSP 1 Score: 927 bits (2396), Expect = 4.820e-297 Identity = 641/1374 (46.65%), Postives = 776/1374 (56.48%), Query Frame = 1
Query: 1 KHYYKQRNYICIAAAALLSMATGRSLGRPSVLTAPLVEHLCKVWHRPRRPIDGVDPSRPSGVGGGPDGVDGCHSKGSGSDGAIAVALGQSVATLPLRPWSNEANVLAP--------------PSSPNLGV-----------EGSSLHGQVLAWSEDATVLAVSLPTGGIACLSNSSDSHGLCLATIPSREGEGMSKGYSGALPGKGVVAAALRGTRATRGGVMEVMVLYFDALLTIHTFHAGATGVAARNDIRSSPSAVCKQQLGKWHLSASAMAFHAGTDTIAVVGPSSGASRLGFSPSLYITLWRVRGGASPPRPGAPSPSPPGADPGSIDG-VMRSRSRRLGGTDGGSVVMPP-KLEELHFVALEGGSLVVPAPRAGLDRAPPGTIPALLPLFFPGLRAVAPPVQVVMNPSGGQLAVLDLAGGVTLLEVSGDAANPSALGRRSLSADGRSWRRDGGGAIHGADRSSSPSXXXXXXXX-------AGAPRAISIGWWSESTLAAVTSMGDLAFLGVSSRRSNYATAEAELLPTAFHGEGAAADRPVGSWPRPPPFGPGCTVWFAGDGRRAAVCWPGSRGSGGAGIGGSVVGLLSLGTAEEAVEGRVKRGLLVEALDLAMACGVHASGVRAALWRRAVDGGSSFTEEDVEEHLTGVADHRWVIRETLSEVALASTKKAVLSLLAEGLRRCNLLLAGGAAPMPCSVDDKTAGATATRGSRPQEHPAVAGSGWDFDDDDI---DLLE---------------------------------------DNSTTAGAGGSSSVAFLAGES--SEIHLLRARLEALRYVIKTSFLAEEAQGRGFDVGRLREFLLVGGSTEDGFLRLPTSARAEACETTAPRRWEEASCRREVLRGGLDRFAGRGETLAVWVLFERHPLETLPLRLETLRRDGGLGRVALPETLDPMAYARLLPCCAPPSGNAPPSRHG--------------------------------------------------------------NPPDRPVFYRMAACPGSDIIVEAFDVAGTP-----DEGSPVVEEE----------------TEATRQRDPGILAEWYSERAREMDTRAGQLRHAATMCELGVARVFSGLGDGGILGNDIEMRHAAEVGGQTGIELLRLRSLLRHMSSLVYSGSLSPLMSLAEWESMNLEQRLSAVLSASSAESIAEDVRGFARAAMTLLSSSLHPSPLLERAQPLTVLRRRGTFEGAREPASAASSPFHHLEGILVGVLGTTVKASQSVEAMEACAAVGKASRPDVAEDERLIRSPEALLTLLLDACYAWSETAPPPRALEAAWDLLECVPARRSDVDASLQDRADALEGHLYATQVLQ 3639
+H+Y QRNY+ IAA+ LS+ +GRSLGRPS LT PLVEHL KVWHRPRRP+ GVD + S GG +G DG +AVALG SVAT+PLRPW+ E V+AP PSS + SLHGQVLAWS+D +V+AVS PTGG+ACL + S G CLAT+ R G +G S A G GV ALRG+ + GG MEV+VL +DA+L +++F ++ SSP+ +Q+LG+WH S AMAFH +DT+AVVGPS GASR L +TLWRV GG ++R+R RL ++ +PP +L ELHFV+LEGGS VVPAPRAGLDRAPPGT+PALLPLFFPGLRAVAPPVQVV NPSG +LAVLD+AGGV+++E S DAAN S+LGRR LSADGRSW R G A XXXXXXXX A PRA+S+GWWSE TLAA++S GDLAFL + ATA + TAF +A DR + PRPPP GP C+VWFAGDGRRAAVCWPG G+ AG GGSVVGLL+LGTAEEAVE RV+RGLL EALDLA ACG+ A VRA LWRRAV+ GS F+E+DV++HL GV+DHRWV++E L+ + LA+T+ A ++LAEGLRRC+ LL + S GWDFD DL + + TA GS AG+ SE+ LRARL +LRY++ T E QGRGFDVG LREFL + GS + G R WE+ RR+ LR L FA +G+ AV VL ERHPLETLP RLE L ALPETLDP YA LLPCC + A S G D PV +A + DV GT D+G + +++ T A RQRD LA WY+ RARE+D RAGQLRHAAT+C G RV G G D+ T +L+RL LL+H++SLVY+GS+SP ++LA WE+M LE+R+SAVLSASS +IA DVR FA AA LLER R + +E A +A+ P LEG++V VLG VK + S E MEACAAV KASRP+V E++RLIR PEALLTLLLDACYAW+ETAP RA+EAAWDLLECVP R+++VDASLQDR DALEGHLYATQVLQ
Sbjct: 17 EHHYVQRNYLRIAASVFLSVLSGRSLGRPSALTPPLVEHLSKVWHRPRRPLVGVDAAAGSREGGLAHAEEG--------DGVVAVALGPSVATIPLRPWAKEVKVMAPRLLRRNKLLPVPGGPSSRRMPAGERXXXXXXXXXALSLHGQVLAWSKDGSVVAVSTPTGGVACLRHLS---GACLATVVPRP-TGPDRGGSAASLGGGVAGVALRGS--SEGGKMEVVVLTYDAVLALYSFSVEGGVGEGGGEVLSSPA--WEQRLGRWHASTCAMAFHGASDTVAVVGPS-GASRP--DSCLSLTLWRVTGGXXXXXXXXXXXXXXXXXXXXXXXXILRARGSRLAAGGSAAMPLPPLRLTELHFVSLEGGSFVVPAPRAGLDRAPPGTVPALLPLFFPGLRAVAPPVQVVFNPSGDRLAVLDIAGGVSIVETSEDAANASSLGRRCLSADGRSWHRVTGAAXXXXXXXXXXXXXXXXXXXXXXXXTGAAVPRAVSVGWWSELTLAAISSAGDLAFLDAPLLEAGPATAATVEIATAFRN--SAGDRGGVAGPRPPPLGPRCSVWFAGDGRRAAVCWPGLGGARSAGAGGSVVGLLTLGTAEEAVESRVRRGLLGEALDLATACGLDAGSVRAGLWRRAVERGS-FSEDDVQQHLAGVSDHRWVVKEALAGIGLAATESAAAAILAEGLRRCDFLLPAHSTGWGSSSXXXXXXXXXXXXXXXXXXXXXXXDGWDFDXXXXXXGDLGDAPRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVTAVGLGS------AGDEGDSEVRRLRARLMSLRYLLDTFLALEGEQGRGFDVGGLREFLGL-GSGDGG---------------AEERAWEDFPYRRDNLRRSLMGFARKGKASAVGVLMERHPLETLPARLEALS--------ALPETLDPRLYASLLPCCGAVALTASASAAGVHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMAVQGRDAPVLGGRSANERPPTPLCEADVNGTAASSDKDDGGSIDQKDVLFVEAPGASDADQIATAAERQRDSAALAAWYAGRARELDARAGQLRHAATLCRFGARRVVVSSSSSGGRGGDV-----------TEGQLVRLDRLLQHLTSLVYAGSVSPSVTLAAWENMGLEERMSAVLSASSVGTIANDVRSFASAAXXXXXXXASGDDLLERP------REQEGYEVPTSQAVSAAVPTR-LEGVMVRVLGALVKTAPSAERMEACAAVAKASRPEVPENDRLIRKPEALLTLLLDACYAWTETAPDARAMEAAWDLLECVPTRQANVDASLQDRVDALEGHLYATQVLQ 1320
BLAST of mRNA_H-elongata_contig7489.15166.1 vs. uniprot
Match: A0A6H5JMI9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI9_9PHAE) HSP 1 Score: 308 bits (790), Expect = 1.410e-91 Identity = 196/371 (52.83%), Postives = 230/371 (61.99%), Query Frame = 1
Query: 601 MVLYFDALLTIHTFHAGATGVAARNDIRSSPSAVCKQQLGKWHLSASAMAFHAGTDTIAVVGPSSGASRLGFSPSLYITLWRVRGGA---------SPPRPGAPSPSPPGADPGSIDGVMRSRSRRLGGTDGGSVVMPPKLEELHFVALEGGSLVVPAPRAGLDRAPPGTIPALLPLFFPGLRAVAPPVQVVMNPSGGQLAVLDLAGGVTLLEVSGDAANPSALGRRSLSADGRSWRRDGGGAIHGADRSSSPSXXXXXXXX---------------AGAPRAISIGWWSESTLAAVTSMGDLAFLGVSSRRSNYATAEAELLPTAFHGEGAAADRPVGSWPRPPPFGPGCTVWFAGDGRRAAVCWPGSRG 1641
MVL +DA+L +++F +D+ SSP+ C+Q+LG+WH S AMAFH TDT+AVVGPS + F L +TLWRV GGA GAD +R+R RL G + P +L ELHFVALEGGSLVVPAPRAGLDRAPPGT+PALLPLFFPGLRAVAPPVQVV NPSG +LAVLD+AGGV+++E S DAA S+LGRR LSADGRSW R G XXXXXXXX A PRA+S+GWWSE TLAA++S GDLAFL + ATA + AF +A DR PRPPP GP C+VWFAGDGRRAAVCWPG+ G
Sbjct: 1 MVLTYDAVLALYSFSVEGGVGGEGSDVLSSPA--CEQRLGRWHASTCAMAFHGATDTVAVVGPSGASCPDSF---LSLTLWRVTGGAVXXXXXXXXXXXXXXXXXXXXXGAD-------LRARGSRLAGRSAAMPLPPLRLTELHFVALEGGSLVVPAPRAGLDRAPPGTVPALLPLFFPGLRAVAPPVQVVFNPSGDRLAVLDIAGGVSIVETSEDAAVASSLGRRCLSADGRSWHRVTGATAXXXXXXXXXXXXXXXXXXXXXXXXXRPSGGGTGAAVPRAVSVGWWSELTLAAMSSAGDLAFLDAPPLEAGPATAATVEIAAAFRN--SAGDRGGVGGPRPPPLGPRCSVWFAGDGRRAAVCWPGAGG 357
BLAST of mRNA_H-elongata_contig7489.15166.1 vs. uniprot
Match: A0A6H5JI52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI52_9PHAE) HSP 1 Score: 238 bits (607), Expect = 8.800e-64 Identity = 214/581 (36.83%), Postives = 270/581 (46.47%), Query Frame = 1
Query: 1873 DHRWVIRETLSEVALASTKKAVLSLLAEGLRRCNLLLAGGAAPMPCSVDDKTAGATATRGSRPQEHPAVAGSGWDFDDD---DIDLLE-------------------------------------DNSTTAGAGGSSSVAFLAGESSEIHLLRARLEALRYVIKTSFLAEEAQGRGFDVGRLREFLLVGGSTEDGFLRLPTSARAEACETTAPRRWEEASCRREVLRGGLDRFAGRGETLAVWVLFERHPLETLPLRLETLRRDGGLGRVALPETLDPMAYARLLPCCAPPSGNAPPSRHGNPPDRPVFYRMAACPGSDIIVEAFDVA---GTP-----DEGSPVVEEE----------------TEATRQRDPGILAEWYSERAREMDTRAGQLRHAATMCELGVARVFSGLGDGGILGNDIEMRHAAEVGGQTGIELLRLRSLLRHMSSLVYSGSLSPLMSLAEWESMNLEQRLSAVLSASSAESIAEDVRGFARAAMTLLSSSLHPSPLLERAQPLTVLRRRGTFEGAREPASAASSPF--HHLEGILVGVLGTTVKASQSVEAMEACAAVGKASRPD 3417
D RWV++E L+ + LA+T+ A ++LAEGLRRC+ LL + S + A G GWDF DD D D+ + A G S SE+ LRARL +LRY++ T E QG FD LREFL G +G + AE ET WE RR+ LR L FA +GE AV VL ERHPLETLP RLE LR + + + AR P SG + H + AAC V A GT D+G + +++ T A RQRD LA WY+ RARE+D RAGQLRHAAT+C G RV GG G D+ T +L+RL LL+H++SLVY+GS+S ++LA WESM+LE+R+ AVLSASS +IA++VR FA AA + LLER +R RG EG P S A S LEG++V VLGT VKA+ S E MEACAAV KASRP+
Sbjct: 33 DARWVVKEALAGIGLAATEPAASAILAEGLRRCDFLLPAHSRGWGSSXXXXXXXXXXXXXPAKERPTASGGDGWDFADDADDDGDVRDAPRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAAVGLGSAGDEGDRDSEVRRLRARLMSLRYLLDTFLALEGEQGCAFDADGLREFL---GRGAEGSKKGLGDGGAE--ETA----WENFPYRRDALRRSLMGFARKGEASAVGVLMERHPLETLPARLEALRTEATTTMM-----MTMAVQARDAPFLGGQSGARVCAGH---------RQQAACHRCSRDVTGLSTANANGTAASSGKDDGGSIGQKDVFCVDAPGASDADEIATAAERQRDSAALAAWYAGRARELDARAGQLRHAATLCRFGARRVVVP-SSGGWAGGDV-----------TEGQLVRLDRLLQHLTSLVYAGSVSASVTLAAWESMDLEERMLAVLSASSVGTIADNVRSFASAAXXXXXXXANGDDLLERPPISENVRPRGQ-EGYEAPTSQAVSTAVPPRLEGVVVRVLGTLVKAAPSAERMEACAAVAKASRPE 577 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7489.15166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7489.15166.1 >prot_H-elongata_contig7489.15166.1 ID=prot_H-elongata_contig7489.15166.1|Name=mRNA_H-elongata_contig7489.15166.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1215bp KHYYKQRNYICIAAAALLSMATGRSLGRPSVLTAPLVEHLCKVWHRPRRPback to top mRNA from alignment at H-elongata_contig7489:79..9537- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7489.15166.1 ID=mRNA_H-elongata_contig7489.15166.1|Name=mRNA_H-elongata_contig7489.15166.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=9459bp|location=Sequence derived from alignment at H-elongata_contig7489:79..9537- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7489:79..9537- >mRNA_H-elongata_contig7489.15166.1 ID=mRNA_H-elongata_contig7489.15166.1|Name=mRNA_H-elongata_contig7489.15166.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=7290bp|location=Sequence derived from alignment at H-elongata_contig7489:79..9537- (Himanthalia elongata Himel1 dioecious)back to top |