mRNA_H-elongata_contig74626.15144.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74626.15144.1
Unique NamemRNA_H-elongata_contig74626.15144.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig74626.15144.1 vs. uniprot
Match: D7FWV2_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV2_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 5.150e-32
Identity = 73/136 (53.68%), Postives = 96/136 (70.59%), Query Frame = 1 
Query:  232 NASPPPIEPPTPDDVPVDTKGLARKLTCSIVSVVFTGVLLILFLQVGLILSAVPSWGDDSKDRMIELEQENLKKLASGKADYVTENFARLEEGVLQAQGFAEQALLEVPETMVVDNYVASYPGLEQVSTTWEHSVW 639
            ++SPPP+     D     T GLARKLTCS +S+V    +LIL +QV L L+AV  WG D+++ MI+LEQ NL KL + KA++V+E+F R+EE  LQ Q FA QA+L VPETM VD+Y+ SY GL Q  TT++HSVW
Sbjct:    6 SSSPPPVV----DGNSKRTTGLARKLTCSEISIVAAATVLILAIQVALTLTAVDDWGADTREAMIQLEQANLLKLVAAKAEFVSEHFGRVEESTLQLQAFAGQAILAVPETMTVDSYLTSYSGLLQSDTTFDHSVW 137
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BLAST of mRNA_H-elongata_contig74626.15144.1 vs. uniprot
Match: A0A6H5KL16_9PHAE (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL16_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 2.790e-23
Identity = 55/103 (53.40%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:  331 VFTGVLLILFLQVGLILSAVPSWGDDSKDRMIELEQENLKKLASGKADYVTENFARLEEGVLQAQGFAEQALLEVPETMVVDNYVASYPGLEQVSTTWEHSVW 639
            V  G ++IL +QV L L+AV  WG D+++ M+E+E+ NL KLA  KA++V+E F R+EE +LQ Q FA QA+L VPETM VD+Y+ SY GL Q  TT+++SVW
Sbjct:   31 VAAGTVIILLIQVVLTLTAVDDWGGDTREAMVEVEEANLLKLAEAKAEFVSEQFGRVEESILQLQTFAGQAVLAVPETMTVDSYMTSYSGLLQSDTTFDNSVW 133
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BLAST of mRNA_H-elongata_contig74626.15144.1 vs. uniprot
Match: A0A6H5KWB6_9PHAE (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWB6_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 3.700e-18
Identity = 56/127 (44.09%), Postives = 78/127 (61.42%), Query Frame = 1 
Query:  265 PDDVPVDTK-GLARKLTCSIVSVVFTGVLLILFLQVGLILSAVPSWGDDSKDRMIELEQENLKKLASGKADYVTENFARLEEGVLQAQGFAEQALLEVPETMVVDNYVASYPGLEQVSTT-WEHSVW 639
            P   P   K GLA+KL  +++     G+  IL L V L+L+ VP WG  +K+ MIE E +N+ +LA  KA++  E +AR++E +L  Q   EQ LL  PET+VVD+YV SY GL+Q +   W HS W
Sbjct:    5 PSTAPAGEKVGLAKKLANAVLLSTGIGLCSILALYVALMLNDVPEWGAMTKEVMIETEMKNINRLALAKAEHTGEIYARVKESLLLLQAVGEQILLTEPETVVVDDYVKSYSGLQQQAVDDWNHSTW 131
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74626.15144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FWV2_ECTSI5.150e-3253.68VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KL16_9PHAE2.790e-2353.40VWFA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KWB6_9PHAE3.700e-1844.09VWFA domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74626contigH-elongata_contig74626:1430..2299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue3.8e-30
Seed eggNOG ortholog2880.D7FWV2
EggNOG free text desc.von Willebrand factor (vWF) type A domain
EggNOG OGs2DNG0@1,2S673@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size870
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74626.15144.1prot_H-elongata_contig74626.15144.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74626 1631..2071 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931150.0451107-UTR-H-elongata_contig74626:1429..16301622931150.0451107-UTR-H-elongata_contig74626:1429..1630Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74626 1430..1630 +
1691679718.975594-UTR-H-elongata_contig74626:1429..16301691679718.975594-UTR-H-elongata_contig74626:1429..1630Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74626 1430..1630 +
1622931150.0695534-UTR-H-elongata_contig74626:2071..22991622931150.0695534-UTR-H-elongata_contig74626:2071..2299Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74626 2072..2299 +
1691679719.0064077-UTR-H-elongata_contig74626:2071..22991691679719.0064077-UTR-H-elongata_contig74626:2071..2299Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74626 2072..2299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931150.0562637-CDS-H-elongata_contig74626:1630..20711622931150.0562637-CDS-H-elongata_contig74626:1630..2071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74626 1631..2071 +
1691679718.987332-CDS-H-elongata_contig74626:1630..20711691679718.987332-CDS-H-elongata_contig74626:1630..2071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74626 1631..2071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74626.15144.1

>prot_H-elongata_contig74626.15144.1 ID=prot_H-elongata_contig74626.15144.1|Name=mRNA_H-elongata_contig74626.15144.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
MVSLRAAPVFNASPPPIEPPTPDDVPVDTKGLARKLTCSIVSVVFTGVLL
ILFLQVGLILSAVPSWGDDSKDRMIELEQENLKKLASGKADYVTENFARL
EEGVLQAQGFAEQALLEVPETMVVDNYVASYPGLEQVSTTWEHSVW*
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mRNA from alignment at H-elongata_contig74626:1430..2299+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74626.15144.1 ID=mRNA_H-elongata_contig74626.15144.1|Name=mRNA_H-elongata_contig74626.15144.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=870bp|location=Sequence derived from alignment at H-elongata_contig74626:1430..2299+ (Himanthalia elongata Himel1 dioecious)
AAACGACCCCCCTGGATCACTAACAGACATAGACCACCCTCACAACACTA
GCGTGGTGGTTGATATCCTATAAGATTTGGGTTAGTTACTCTGTAGCACT
TACTCGAGTTAAATTTATTAAACTCTGATTTGCGAAGCGGCCAAGACCGC
GCCTCGTGGGTATTAACTAAGCACCCTGTGTATCACCATAATATTACCGC
AATGGTATCTTTACGGGCAGCACCCGTCTTCAATGCGTCACCTCCGCCGA
TCGAGCCGCCTACGCCAGATGACGTTCCAGTGGACACGAAGGGTCTGGCG
CGGAAGCTCACTTGTTCCATTGTGTCAGTGGTCTTCACTGGAGTGTTGTT
AATTTTATTTCTCCAAGTTGGATTGATCTTGAGCGCTGTGCCATCCTGGG
GAGACGACTCCAAGGACAGAATGATTGAGCTCGAACAGGAGAACCTTAAG
AAGCTTGCATCCGGCAAGGCGGATTACGTGACCGAGAATTTCGCGAGACT
AGAAGAAGGTGTTCTCCAGGCTCAAGGGTTCGCCGAGCAGGCCCTGCTGG
AAGTCCCCGAAACGATGGTTGTCGACAACTACGTCGCGAGCTACCCGGGA
CTGGAGCAGGTTTCCACGACTTGGGAGCACAGCGTCTGGTAAGTATAGCT
CTTGTCTCGTTGAGTGCATACAGTGTGTGAAGGCGTCTGGGTAGGATATG
TACTGTTTCTTGGGCTGTGCTGAAGGTACGGTTCGTGCCACAACGAACCG
TAAATCCCACGTGCTTGCGTTATTCCAGCTTCCAACCATCGCATACAATG
CTCAAAGGTAGTAATATGCACATTCGAACCTGACGATAGTTCGTCCCCTG
GATTGCACCCTTTACGGCGC
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Coding sequence (CDS) from alignment at H-elongata_contig74626:1430..2299+

>mRNA_H-elongata_contig74626.15144.1 ID=mRNA_H-elongata_contig74626.15144.1|Name=mRNA_H-elongata_contig74626.15144.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig74626:1430..2299+ (Himanthalia elongata Himel1 dioecious)
ATGGTATCTTTACGGGCAGCACCCGTCTTCAATGCGTCACCTCCGCCGAT
CGAGCCGCCTACGCCAGATGACGTTCCAGTGGACACGAAGGGTCTGGCGC
GGAAGCTCACTTGTTCCATTGTGTCAGTGGTCTTCACTGGAGTGTTGTTA
ATTTTATTTCTCCAAGTTGGATTGATCTTGAGCGCTGTGCCATCCTGGGG
AGACGACTCCAAGGACAGAATGATTGAGCTCGAACAGGAGAACCTTAAGA
AGCTTGCATCCGGCAAGGCGGATTACGTGACCGAGAATTTCGCGAGACTA
GAAGAAGGTGTTCTCCAGGCTCAAGGGTTCGCCGAGCAGGCCCTGCTGGA
AGTCCCCGAAACGATGGTTGTCGACAACTACGTCGCGAGCTACCCGGGAC
TGGAGCAGGTTTCCACGACTTGGGAGCACAGCGTCTGGTAAATGGTATCT
TTACGGGCAGCACCCGTCTTCAATGCGTCACCTCCGCCGATCGAGCCGCC
TACGCCAGATGACGTTCCAGTGGACACGAAGGGTCTGGCGCGGAAGCTCA
CTTGTTCCATTGTGTCAGTGGTCTTCACTGGAGTGTTGTTAATTTTATTT
CTCCAAGTTGGATTGATCTTGAGCGCTGTGCCATCCTGGGGAGACGACTC
CAAGGACAGAATGATTGAGCTCGAACAGGAGAACCTTAAGAAGCTTGCAT
CCGGCAAGGCGGATTACGTGACCGAGAATTTCGCGAGACTAGAAGAAGGT
GTTCTCCAGGCTCAAGGGTTCGCCGAGCAGGCCCTGCTGGAAGTCCCCGA
AACGATGGTTGTCGACAACTACGTCGCGAGCTACCCGGGACTGGAGCAGG
TTTCCACGACTTGGGAGCACAGCGTCTGGTAA
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