mRNA_H-elongata_contig74510.15134.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig74510.15134.1 vs. uniprot
Match: D8LNW1_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNW1_ECTSI) HSP 1 Score: 167 bits (423), Expect = 3.190e-46 Identity = 81/109 (74.31%), Postives = 97/109 (88.99%), Query Frame = 1
Query: 1 QRFLAYVRQQQDFYPFLTVRETLLIAAGLRLERDVSPTQKEAIVGDIIERLGLSRAADTLVGDLRTPGISGGEKRRLAMGLQLIDLECPSIVFLDEPTSGLDSHQALLV 327
QR++AYVRQ+QDFYPFLTVRETLL+ AGLRL+R V+ QKE IV +++LGLSR+A+TLVGDL+TPGISGGEKRRLAMG+Q+I LE PS++ LDEPTSGLDSHQAL V
Sbjct: 117 QRYVAYVRQEQDFYPFLTVRETLLLKAGLRLDRTVTHAQKEEIVSATMDKLGLSRSAETLVGDLKTPGISGGEKRRLAMGIQMIGLEAPSVILLDEPTSGLDSHQALQV 225
BLAST of mRNA_H-elongata_contig74510.15134.1 vs. uniprot
Match: A0A7S0NAZ0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0NAZ0_9EUKA) HSP 1 Score: 108 bits (271), Expect = 4.200e-28 Identity = 55/102 (53.92%), Postives = 77/102 (75.49%), Query Frame = 1
Query: 13 AYVRQQQDFYPFLTVRETLLIAAGLRLERDVSPTQKEAIVGDIIERLGLSRAADTLVGDLRTPGISGGEKRRLAMGLQLIDLECPSIVFLDEPTSGLDSHQA 318
AYVRQ+ FY +TVRETL+ AA LRL +VS +K +V ++++L L +AADT+VGD + GISGGE++RL++G +LI P+++FLDEPTSGLD+ QA
Sbjct: 25 AYVRQEDIFYTQMTVRETLMFAARLRLPSNVSLEEKREVVDSLLKKLSLVKAADTIVGDAKRRGISGGERKRLSIGCELIG--SPNLLFLDEPTSGLDAFQA 124
BLAST of mRNA_H-elongata_contig74510.15134.1 vs. uniprot
Match: UPI001F5C6F0C (ABC transporter G family member 7-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C6F0C) HSP 1 Score: 106 bits (264), Expect = 2.260e-27 Identity = 55/103 (53.40%), Postives = 75/103 (72.82%), Query Frame = 1
Query: 10 LAYVRQQQDFYPFLTVRETLLIAAGLRLERDVSPTQKEAIVGDIIERLGLSRAADTLVGDLRTPGISGGEKRRLAMGLQLIDLECPSIVFLDEPTSGLDSHQA 318
+AYVRQ+ F+ LTVRETL +AA L+L +SP +KE V D++ RLGL +AD++VGD + GISG EK+RLA+ +LI PS++F DEPT+GLD+ QA
Sbjct: 8 IAYVRQEDIFFSQLTVRETLSLAAELQLPDTMSPERKEKYVNDLLFRLGLVNSADSIVGDAKVRGISGREKKRLALACELI--ASPSVIFADEPTTGLDAFQA 108
BLAST of mRNA_H-elongata_contig74510.15134.1 vs. uniprot
Match: A0A7S1UAZ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAZ7_9STRA) HSP 1 Score: 111 bits (277), Expect = 2.280e-27 Identity = 58/102 (56.86%), Postives = 76/102 (74.51%), Query Frame = 1
Query: 13 AYVRQQQDFYPFLTVRETLLIAAGLRLERDVSPTQKEAIVGDIIERLGLSRAADTLVGDLRTPGISGGEKRRLAMGLQLIDLECPSIVFLDEPTSGLDSHQA 318
YV+QQ FY +TVRETL+ AA LRL RDV +K A+V ++ +LGL++ ADT+VGD ++ GISGGEK+RL + +LI P+I+FLDEPTSGLDS QA
Sbjct: 111 GYVKQQDLFYAQMTVRETLMFAARLRLPRDVPLEEKRALVEGLLSKLGLAKVADTIVGDAKSRGISGGEKKRLNIACELIG--DPTILFLDEPTSGLDSFQA 210
BLAST of mRNA_H-elongata_contig74510.15134.1 vs. uniprot
Match: A0A446PAE9_TRITD (ABC transporter domain-containing protein n=3 Tax=Poaceae TaxID=4479 RepID=A0A446PAE9_TRITD) HSP 1 Score: 108 bits (269), Expect = 3.810e-27 Identity = 55/103 (53.40%), Postives = 76/103 (73.79%), Query Frame = 1
Query: 10 LAYVRQQQDFYPFLTVRETLLIAAGLRLERDVSPTQKEAIVGDIIERLGLSRAADTLVGDLRTPGISGGEKRRLAMGLQLIDLECPSIVFLDEPTSGLDSHQA 318
+AYVRQ+ F+ LTVRETL +AA L+L +SP +KE V D++ RLGL +AD++VGD + GISGGEK+RL++ +LI PS++F DEPT+GLD+ QA
Sbjct: 45 IAYVRQEDIFFSQLTVRETLSLAAELQLPDTMSPERKEKYVNDLLFRLGLVNSADSIVGDAKVRGISGGEKKRLSLACELI--ASPSVIFADEPTTGLDAFQA 145
BLAST of mRNA_H-elongata_contig74510.15134.1 vs. uniprot
Match: A0A2P6VEZ0_9CHLO (ABC transporter G family member 7 isoform B n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VEZ0_9CHLO) HSP 1 Score: 112 bits (281), Expect = 9.300e-27 Identity = 58/102 (56.86%), Postives = 76/102 (74.51%), Query Frame = 1
Query: 13 AYVRQQQDFYPFLTVRETLLIAAGLRLERDVSPTQKEAIVGDIIERLGLSRAADTLVGDLRTPGISGGEKRRLAMGLQLIDLECPSIVFLDEPTSGLDSHQA 318
+V+Q FYP LTV+ETL++AA LR+ RD S +KEA V II RLGL++AADT VGD +T G+SGGEK+RL++ ++LI P +VF DEPTSGLD+ A
Sbjct: 153 GFVQQDDLFYPQLTVKETLMMAAELRMSRDTSAEEKEAYVDGIISRLGLAKAADTPVGDAKTRGLSGGEKKRLSIAVELISR--PMLVFADEPTSGLDAFSA 252
BLAST of mRNA_H-elongata_contig74510.15134.1 vs. uniprot
Match: A0A4D9D0J8_9STRA (ABC transporter domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0J8_9STRA) HSP 1 Score: 112 bits (281), Expect = 9.630e-27 Identity = 59/105 (56.19%), Postives = 81/105 (77.14%), Query Frame = 1
Query: 13 AYVRQQQDFYPFLTVRETLLIAAGLRLERDVSPTQKEAIVGDIIERLGLSRAADTLVGDLRTPGISGGEKRRLAMGLQLIDLECPSIVFLDEPTSGLDSHQALLV 327
AYVRQQ FY LTVRETL++AA LRL ++ +K ++V +++RLGL++AADT+VGD + GISGGEK+RL++ +L L PS++F DEPTSGLDS+Q+L V
Sbjct: 162 AYVRQQDLFYSQLTVRETLVMAARLRLPPSLTLREKTSLVDRLLKRLGLAKAADTIVGDDKVRGISGGEKKRLSLACEL--LGSPSLIFADEPTSGLDSYQSLRV 264
BLAST of mRNA_H-elongata_contig74510.15134.1 vs. uniprot
Match: A0A7S0QJW9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QJW9_9CRYP) HSP 1 Score: 110 bits (275), Expect = 1.080e-26 Identity = 58/102 (56.86%), Postives = 76/102 (74.51%), Query Frame = 1
Query: 13 AYVRQQQDFYPFLTVRETLLIAAGLRLERDVSPTQKEAIVGDIIERLGLSRAADTLVGDLRTPGISGGEKRRLAMGLQLIDLECPSIVFLDEPTSGLDSHQA 318
AYVRQ+ FY +TVRETLL AA LRL R + KEA+V +I+ +L L++ A+T+VG R GISGGEK+RL++G +LI PS++FLDEPT+GLDS QA
Sbjct: 117 AYVRQEDIFYSQMTVRETLLFAARLRLPRTMPLASKEALVEEILGKLSLTKCANTIVGSNRVRGISGGEKKRLSIGCELI--ASPSLIFLDEPTTGLDSFQA 216
BLAST of mRNA_H-elongata_contig74510.15134.1 vs. uniprot
Match: A0A7S3RUE9_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RUE9_EMIHU) HSP 1 Score: 108 bits (271), Expect = 2.340e-26 Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = 1
Query: 10 LAYVRQQQDFYPFLTVRETLLIAAGLRLERDVSPTQKEAIVGDIIERLGLSRAADTLVGDLRTPGISGGEKRRLAMGLQLIDLECPSIVFLDEPTSGLDSHQA 318
+AYVRQ+ FY +TVRETLL AA LRL S +KE V +II RL L RAADT+VGD + GISGGE++RLA+G +L L P ++FLDEPTSGLD+ A
Sbjct: 156 VAYVRQEDVFYTQMTVRETLLFAARLRLPASTSLAEKERRVEEIISRLDLGRAADTIVGDGKRRGISGGERKRLAIGCEL--LSDPRLLFLDEPTSGLDAFAA 256
BLAST of mRNA_H-elongata_contig74510.15134.1 vs. uniprot
Match: A0A8J9REU9_9CHLO (Protein white n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9REU9_9CHLO) HSP 1 Score: 111 bits (278), Expect = 2.360e-26 Identity = 58/102 (56.86%), Postives = 78/102 (76.47%), Query Frame = 1
Query: 13 AYVRQQQDFYPFLTVRETLLIAAGLRLERDVSPTQKEAIVGDIIERLGLSRAADTLVGDLRTPGISGGEKRRLAMGLQLIDLECPSIVFLDEPTSGLDSHQA 318
YV+Q+ FY L VRETL +AA LRL +D+S +KEA V D+I+RLGL+++ADT VGD + G+SGGEK+RL++G +L L P ++FLDEPT+GLDS QA
Sbjct: 150 GYVQQEDLFYSQLNVRETLNMAAALRLPKDMSAEEKEAAVVDLIQRLGLTQSADTPVGDAKKRGLSGGEKKRLSIGCEL--LGSPMLLFLDEPTTGLDSFQA 249 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74510.15134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig74510.15134.1 >prot_H-elongata_contig74510.15134.1 ID=prot_H-elongata_contig74510.15134.1|Name=mRNA_H-elongata_contig74510.15134.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp QRFLAYVRQQQDFYPFLTVRETLLIAAGLRLERDVSPTQKEAIVGDIIERback to top mRNA from alignment at H-elongata_contig74510:449..2989- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig74510.15134.1 ID=mRNA_H-elongata_contig74510.15134.1|Name=mRNA_H-elongata_contig74510.15134.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2541bp|location=Sequence derived from alignment at H-elongata_contig74510:449..2989- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig74510:449..2989- >mRNA_H-elongata_contig74510.15134.1 ID=mRNA_H-elongata_contig74510.15134.1|Name=mRNA_H-elongata_contig74510.15134.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig74510:449..2989- (Himanthalia elongata Himel1 dioecious)back to top |