mRNA_H-elongata_contig7445.15131.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7445.15131.1
Unique NamemRNA_H-elongata_contig7445.15131.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7445.15131.1 vs. uniprot
Match: A0A6H5K524_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K524_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.820e-27
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:    1 MSFYTPLKQASKPVPFPLDFEKRIALEFGMRYQSKIGVTPTVENCRAVLKEMPLESCHVTTAWISRGCLTDAIII 225
            +SF  PLK  SKPV FP +F+K IALEF MRY  +IG TPT+ENCR VLKEMPLE+C VT AW SRGCL DAIII
Sbjct:   25 LSFSIPLKDTSKPVAFPANFQKHIALEFAMRYLCEIGATPTMENCRVVLKEMPLEACSVTAAWRSRGCLADAIII 99
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BLAST of mRNA_H-elongata_contig7445.15131.1 vs. uniprot
Match: K3WGP9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGP9_GLOUD)

HSP 1 Score: 75.9 bits (185), Expect = 6.240e-16
Identity = 33/73 (45.21%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:    7 FYTPLKQASKPVPFPLDFEKRIALEFGMRYQSKIGVTPTVENCRAVLKEMPLESCHVTTAWISRGCLTDAIII 225
            F  PLK   KP  FP +F +    E+ ++Y  K+G  PT EN   VL+ +PLE CH+ TAW SRG L+D + I
Sbjct:   30 FTIPLKPQDKPASFPANFAQAFKEEYAIKYLQKLGARPTPENVAMVLENLPLEDCHIATAWKSRGSLSDVVTI 102
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BLAST of mRNA_H-elongata_contig7445.15131.1 vs. uniprot
Match: A0A2D4BS64_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BS64_PYTIN)

HSP 1 Score: 74.7 bits (182), Expect = 5.920e-14
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   16 PLKQASKPVPFPLDFEKRIALEFGMRYQSKIGVTPTVENCRAVLKEMPLESCHVTTAWISRGCLTDAIII 225
            PLK   KPV  P +F   +  E+ ++Y  ++G  PT EN   VLKE+PLE CHV TAW +RG L D + I
Sbjct:   25 PLKPQEKPVALPPNFADVLREEYAIKYLQRLGARPTAENIAVVLKELPLEECHVATAWKARGSLADVVTI 94
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BLAST of mRNA_H-elongata_contig7445.15131.1 vs. uniprot
Match: A0A7S4BUT5_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BUT5_CHRCT)

HSP 1 Score: 61.2 bits (147), Expect = 3.320e-9
Identity = 29/69 (42.03%), Postives = 38/69 (55.07%), Query Frame = 1 
Query:   19 LKQASKPVPFPLDFEKRIALEFGMRYQSKIGVTPTVENCRAVLKEMPLESCHVTTAWISRGCLTDAIII 225
            L+   +PV  P +  K +  EF  RY   IG  PT  N   V K MP++SC  TTAW SRG ++D + I
Sbjct:   11 LRPQDRPVDLPKELRKTLKNEFYARYLESIGAAPTPGNMAEVKKNMPIDSCQFTTAWKSRGWVSDYLYI 79
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BLAST of mRNA_H-elongata_contig7445.15131.1 vs. uniprot
Match: A0A7S2CRT8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CRT8_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 2.520e-8
Identity = 27/69 (39.13%), Postives = 37/69 (53.62%), Query Frame = 1 
Query:   19 LKQASKPVPFPLDFEKRIALEFGMRYQSKIGVTPTVENCRAVLKEMPLESCHVTTAWISRGCLTDAIII 225
            L+   KPV  P ++ + +  E  +RY   IG  PT  N   V K +P E C  TTAW SRG ++D + I
Sbjct:   11 LRPRDKPVELPEEYRRSLRNELQVRYLESIGAAPTKANLAMVRKHIPPEKCKFTTAWKSRGWVSDTLYI 79
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BLAST of mRNA_H-elongata_contig7445.15131.1 vs. uniprot
Match: A0A5D6YEK6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YEK6_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.570e-7
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:   82 FGMRYQSKIGVTPTVENCRAVLKEMPLESCHVTTAWISRGCLTDAIII 225
            + ++Y  ++G  PT +N   VL+ +PL+ CHV TAW SRG L D + I
Sbjct:    2 YAIKYLQRLGANPTADNIALVLENLPLDECHVATAWRSRGSLADVLTI 49
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7445.15131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K524_9PHAE1.820e-2770.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K3WGP9_GLOUD6.240e-1645.21Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BS64_PYTIN5.920e-1447.14Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A7S4BUT5_CHRCT3.320e-942.03Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S2CRT8_9EUKA2.520e-839.13Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A5D6YEK6_9STRA3.570e-743.75Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7445contigH-elongata_contig7445:8668..9448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue1.4e-12
Seed eggNOG ortholog115417.EPrPW00000024672
EggNOG free text desc.function. Source PGD
EggNOG OGs1MB1S@121069,2BQW0@1,2S1V5@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.7745883-CDS-H-elongata_contig7445:8667..87871622931148.7745883-CDS-H-elongata_contig7445:8667..8787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7445 8668..8787 -
1691679718.4826748-CDS-H-elongata_contig7445:8667..87871691679718.4826748-CDS-H-elongata_contig7445:8667..8787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7445 8668..8787 -
1622931148.7943292-CDS-H-elongata_contig7445:9343..94481622931148.7943292-CDS-H-elongata_contig7445:9343..9448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7445 9344..9448 -
1691679718.4940877-CDS-H-elongata_contig7445:9343..94481691679718.4940877-CDS-H-elongata_contig7445:9343..9448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7445 9344..9448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7445.15131.1prot_H-elongata_contig7445.15131.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7445 8668..9448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7445.15131.1

>prot_H-elongata_contig7445.15131.1 ID=prot_H-elongata_contig7445.15131.1|Name=mRNA_H-elongata_contig7445.15131.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MSFYTPLKQASKPVPFPLDFEKRIALEFGMRYQSKIGVTPTVENCRAVLK
EMPLESCHVTTAWISRGCLTDAIII
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mRNA from alignment at H-elongata_contig7445:8668..9448-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7445.15131.1 ID=mRNA_H-elongata_contig7445.15131.1|Name=mRNA_H-elongata_contig7445.15131.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=781bp|location=Sequence derived from alignment at H-elongata_contig7445:8668..9448- (Himanthalia elongata Himel1 dioecious)
ATGTCGTTCTATACCCCTCTCAAACAAGCCTCCAAGCCCGTACCCTTTCC
TTTGGACTTCGAGAAGCGTATCGCCCTGGAGTTTGGTATGCGCTACCAGT
CCAAGGTAAAAAACGAGCATACTGGAGTGGTGATGTTGTGACTCACGTCA
GGTCATGATCTTGGTAGCGCTTTTGTTCGAAAAGTAATTTTACTGTGTTT
GGCGATACCTGCGCGTCCTCATATGCTGCAGAGAGTTTGGGCAACATGTG
ATTTGGGGATAAAAGGGTCGTGCTCATTAGCTCTATGTAGTGCGAGCATT
AGTACTATAGTCGTCGCCTATGTATGTCCACGCGAAAGAGTTTTTTAAGA
ACTGTGGAGAATTGTTTATTTATATACATTCACAACGGAGTTAGGAAAAT
GGTCATTTGTGTTGAGAATAACTATGGTCTTGTTGGTCAACTCATCTGAG
AGAGTGTTCAAACGTCTTGGGCGTCTCTCGGCATGAATCGAGAACGAGGA
CGCTGGCGATACGATCGCGTGAGCGGCACAGAAACGATAAGCATACGCAT
CTTAGGGGGATCGCTCACACCATAATAATATTCCCAGCGGTAAGCACCAA
CAAACGTTAAAGCGACAATGCGCACACCATGATGGGTCGACCTATAATCG
TCGCCCTTCAGATCGGCGTCACGCCGACGGTTGAGAACTGTCGCGCAGTT
CTGAAGGAAATGCCGCTAGAATCGTGCCACGTCACCACTGCCTGGATCAG
CAGAGGTTGCTTGACCGATGCCATAATAATT
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Coding sequence (CDS) from alignment at H-elongata_contig7445:8668..9448-

>mRNA_H-elongata_contig7445.15131.1 ID=mRNA_H-elongata_contig7445.15131.1|Name=mRNA_H-elongata_contig7445.15131.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig7445:8668..9448- (Himanthalia elongata Himel1 dioecious)
ATGTCGTTCTATACCCCTCTCAAACAAGCCTCCAAGCCCGTACCCTTTCC
TTTGGACTTCGAGAAGCGTATCGCCCTGGAGTTTGGTATGCGCTACCAGT
CCAAGATGTCGTTCTATACCCCTCTCAAACAAGCCTCCAAGCCCGTACCC
TTTCCTTTGGACTTCGAGAAGCGTATCGCCCTGGAGTTTGGTATGCGCTA
CCAGTCCAAGATCGGCGTCACGCCGACGGTTGAGAACTGTCGCGCAGTTC
TGAAGGAAATGCCGCTAGAATCGTGCCACGTCACCACTGCCTGGATCAGC
AGAGGTTGCTTGACCGATGCCATAATAATTATCGGCGTCACGCCGACGGT
TGAGAACTGTCGCGCAGTTCTGAAGGAAATGCCGCTAGAATCGTGCCACG
TCACCACTGCCTGGATCAGCAGAGGTTGCTTGACCGATGCCATAATAATT
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