prot_H-elongata_contig74340.15121.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig74340.15121.1
Unique Nameprot_H-elongata_contig74340.15121.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length84
Homology
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BLAST of mRNA_H-elongata_contig74340.15121.1 vs. uniprot
Match: D7G2B0_ECTSI (Putative 30S ribosomal protein S18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2B0_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.230e-32
Identity = 63/84 (75.00%), Postives = 68/84 (80.95%), Query Frame = 0 
Query:    1 MILGRNRTGLCAKCQRKVTRTIKAARQMGLIPTVSDFEIRDTGPGGLYAWAGQGGDHDAMAKXXXXXXANLKKKE-KKRFGSLV 83
            MILGR RTGLCAKCQRKV  T+KAARQMGL+PTVSD+E+RDTGPGGLYAWAG+ GDHDAMAK         KK E KKRFGSL 
Sbjct:  317 MILGRYRTGLCAKCQRKVAHTVKAARQMGLVPTVSDYEVRDTGPGGLYAWAGKDGDHDAMAKAKVAAEMARKKSETKKRFGSLA 400
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BLAST of mRNA_H-elongata_contig74340.15121.1 vs. uniprot
Match: A0A7S2E188_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E188_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.200e-7
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 0 
Query:    1 MILGRNRTGLCAKCQRKVTRTIKAARQMGLIPTVSDFEIRD 41
            MI  R  TGLCAKCQRK ++TIK ARQ+G+IP V ++  RD
Sbjct:  166 MIRPRRHTGLCAKCQRKASKTIKLARQLGMIPFVQEYRTRD 206
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BLAST of mRNA_H-elongata_contig74340.15121.1 vs. uniprot
Match: A0A836CMS6_9STRA (Ribosomal protein S18-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMS6_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.970e-7
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 0 
Query:    1 MILGRNRTGLCAKCQRKVTRTIKAARQMGLIPTVSDFEIR 40
            MI+ R RTGLCA+CQRKV RT+K AR MG IP +  + ++
Sbjct:   63 MIMPRRRTGLCARCQRKVARTVKRARHMGAIPYIGTYGVK 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74340.15121.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G2B0_ECTSI1.230e-3275.00Putative 30S ribosomal protein S18 n=2 Tax=Ectocar... [more]
A0A7S2E188_9STRA2.200e-760.98Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A836CMS6_9STRA3.970e-757.50Ribosomal protein S18-domain-containing protein n=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 57..77
NoneNo IPR availablePANTHERPTHR13479:SF4028S RIBOSOMAL PROTEIN S18C, MITOCHONDRIALcoord: 2..57
NoneNo IPR availablePANTHERPTHR1347930S RIBOSOMAL PROTEIN S18coord: 2..57
NoneNo IPR availablePRODOMPD002239coord: 2..32
e-value: 2.0E-4
score: 99.0
IPR036870Ribosomal protein S18 superfamilyGENE3D4.10.640.10coord: 1..37
e-value: 1.2E-14
score: 55.6
IPR036870Ribosomal protein S18 superfamilySUPERFAMILY46911Ribosomal protein S18coord: 2..36
IPR001648Ribosomal protein S18PFAMPF01084Ribosomal_S18coord: 2..31
e-value: 2.8E-10
score: 40.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74340contigH-elongata_contig74340:321..1341 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74340.15121.1mRNA_H-elongata_contig74340.15121.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig74340 285..2640 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig74340.15121.1 ID=prot_H-elongata_contig74340.15121.1|Name=mRNA_H-elongata_contig74340.15121.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MILGRNRTGLCAKCQRKVTRTIKAARQMGLIPTVSDFEIRDTGPGGLYAW
AGQGGDHDAMAKAKAVAEANLKKKEKKRFGSLV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036870Ribosomal_S18_sf
IPR001648Ribosomal_S18