prot_H-elongata_contig7408.15100.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7408.15100.1
Unique Nameprot_H-elongata_contig7408.15100.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length644
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7408.15100.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 130..169
e-value: 2.1E-4
score: 30.6
coord: 591..634
e-value: 7.2
score: 11.6
coord: 74..120
e-value: 56.0
score: 5.9
coord: 482..521
e-value: 0.12
score: 21.5
IPR001680WD40 repeatPFAMPF00400WD40coord: 137..169
e-value: 0.0035
score: 18.2
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 496..530
score: 10.676
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 137..169
score: 11.077
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 18..286
e-value: 9.6E-17
score: 63.1
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 463..643
e-value: 2.7E-14
score: 54.7
NoneNo IPR availablePANTHERPTHR19879TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 227..634
coord: 132..199
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 508..522
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 137..178
score: 10.153
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 489..530
score: 9.942
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilySUPERFAMILY50998Quinoprotein alcohol dehydrogenase-likecoord: 47..638

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7408contigH-elongata_contig7408:2446..5941 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7408.15100.1mRNA_H-elongata_contig7408.15100.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7408 2446..5941 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7408.15100.1 ID=prot_H-elongata_contig7408.15100.1|Name=mRNA_H-elongata_contig7408.15100.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=644bp
MKVSRAMRQRPVEFVRLRAWTAAPARFRNGVSAVTSLCLVDESSAGGPPL
LIAGDEDGGVSVRRVPSDTTVGVTDAELWSMRPGGPRTQLHDSCVNSIKL
LPQQRGFVCAGDDGVVSAVATLEAASGSDIRKAATALVGHRGFVTDCDAS
SCGQAILSSSTDGTMLIWDPMAANTPVASVTIGRPVNSACFSAGDPYALV
CAPELDRDPTGKGTCGVGRGKRDDLVEIWDIRRGQTKSLRCFRDAIPAAL
ATAFAEPGAPHQSPLADIQPTPQSPQAPFPSIWAESFSSGSISARVPRAT
KPAGGPSWLAAALGSPSVPSPATPLLRRSVWADDSSDVESLPTPSTRCPL
EKENAHPDGADGDIGSSEMRWKSRCHPHSVDTSGGGQSADTSPSLEACSG
GVGDRRQRQGTQRHGRARAPVRDEPALVLDWATLPSESSDGRGCLHGGDG
TIWLPGGKTTLCTNGRRRQPRSGDASTIARQALPKCDVCSEGLASVYSVQ
VSSDGRGILTASRDAIVTLWDAQSRRAVYRFGHPQLSTRARPILWDDDSS
TKGYGGLRGEEPGGGSSSGKNRVTVLTGMRNGEVRPWRVGSRFPNRVFKP
GQRYEGFEITCLASSRDGSVFASADFGGNVRVQSATAGRVSEL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR011047Quinoprotein_ADH-like_supfam