mRNA_H-elongata_contig74060.15096.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE) HSP 1 Score: 156 bits (395), Expect = 1.520e-45 Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 1
Query: 1 IKMYELDKDGTKVYIDPLDWWWVRCTDFPHLASLARRVLAIPATQAESERLFSCTGNIVAKNRNNLAPTTVELLVLLRHSWK 246
IKMYE DK+G KVY+DPLDWW VRC DFPHLA+LARRVLAIPATQAESERLFSC GNIV KNRNNLAPTTVELLVLLRHSWK
Sbjct: 207 IKMYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWK 288
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE) HSP 1 Score: 110 bits (275), Expect = 2.260e-28 Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1
Query: 76 TDFPHLASLARRVLAIPATQAESERLFSCTGNIVAKNRNNLAPTTVELLVLLRHSWK 246
TDFPHLA+LARRVLAIPATQA+SERLFSC GNIV KNRNNLAPTTVELLVLLRHSWK
Sbjct: 152 TDFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWK 208
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 1.240e-14 Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 19 DKDGTKVYIDPLDWWWVRCTDFPHLASLARRVLAIPATQAESERLFSCTGNIVAKNRNNLAPTTVELLVLLRHS 240
++ G +V PL+WW V+ ++P LASLARRVL IPA QA+SER+FS G +V K R + P V L+V LR++
Sbjct: 470 EEKGQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNT 543
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 2.270e-14 Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 1 IKMYELDKDGT---KVYIDPLDWWWVRCTDFPHLASLARRVLAIPATQAESERLFSCTGNIVAKNRNNLAPTTVELLVLLRHSW 243
I+++++ K T KV+ +PLD W + ++P LA+LARRVLAIP++QA+SER+FS G V R+ L VELLV LR+ W
Sbjct: 464 IRVWDMQKTNTGDKKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVW 547
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Match: UPI001C19DB61 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C19DB61) HSP 1 Score: 71.2 bits (173), Expect = 4.640e-13 Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 49 PLDWWWVRCTDFPHLASLARRVLAIPATQAESERLFSCTGNIVAKNRNNLAPTTVELLVLLRHSW 243
P WW + + FP L+ LA++ LAIPAT A SERLFS GN++ R NL+PTT E L+ + +W
Sbjct: 178 PFKWWASQESQFPILSQLAKKYLAIPATSAASERLFSDAGNVMTVKRTNLSPTTFEHLIFCKRNW 242
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Match: UPI001C164491 (Hypothetical protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C164491) HSP 1 Score: 70.5 bits (171), Expect = 1.020e-12 Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 49 PLDWWWVRCTDFPHLASLARRVLAIPATQAESERLFSCTGNIVAKNRNNLAPTTVELLVLLRHSW 243
P WW + + FP L+ LA++ LAIPAT A SERLFS GN++ R NL+PTT E L+ + +W
Sbjct: 189 PFKWWASQESRFPILSQLAKKYLAIPATSAASERLFSDAGNVMTVKRTNLSPTTFEHLIFCKRNW 253
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Match: UPI000CD602C4 (zinc finger BED domain-containing protein 4-like isoform X1 n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=UPI000CD602C4) HSP 1 Score: 70.1 bits (170), Expect = 1.200e-12 Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1
Query: 46 DPLDWWWVRCTDFPHLASLARRVLAIPATQAESERLFSCTGNIVAKNRNNLAPTTVELLVLL 231
DPL WW T FP L+ LA++ L +PAT + SER+FSC+GNIV +R +L P TV++LV L
Sbjct: 182 DPLKWWKEHETLFPALSHLAKKYLLVPATSSPSERVFSCSGNIVTCHRASLKPETVDMLVFL 243
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Match: A0A6I8U4U8_AEDAE (BED-type domain-containing protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=A0A6I8U4U8_AEDAE) HSP 1 Score: 70.1 bits (170), Expect = 3.380e-12 Identity = 33/69 (47.83%), Postives = 45/69 (65.22%), Query Frame = 1
Query: 37 VYIDPLDWWWVRCTDFPHLASLARRVLAIPATQAESERLFSCTGNIVAKNRNNLAPTTVELLVLLRHSW 243
V +D L WW FP LA ARR+L IPAT A SER+FSC+GNI+ R+ LA +E+LV ++ ++
Sbjct: 663 VEVDVLQWWKKNERVFPCLAKCARRILGIPATSAPSERVFSCSGNIMTSQRHQLASKNLEMLVYIKQNF 731
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Match: G3Q1U2_GASAC (Uncharacterized protein n=2 Tax=Gasterosteus aculeatus TaxID=69293 RepID=G3Q1U2_GASAC) HSP 1 Score: 69.7 bits (169), Expect = 4.570e-12 Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1
Query: 46 DPLDWWWVRCTDFPHLASLARRVLAIPATQAESERLFSCTGNIVAKNRNNLAPTTVELLVLL 231
DPL WW + FP L+ LA++ L +PAT + SER+FSC+GNIV +R +L P TV+ LV L
Sbjct: 537 DPLKWWRIMKLSFPGLSRLAKKYLLVPATSSPSERVFSCSGNIVTCHRASLKPDTVDRLVFL 598
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 6.210e-12 Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1
Query: 1 IKMYELDKDGTKVYIDPLDWWWVRCTDFPHLASLARRVLAIPATQAESERL 153
I ++ DG KVY DPLDWW R +FPHLA+LARRVLAIP++QA SER+
Sbjct: 499 ISIWYWGTDGKKVYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSERV 549 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig74060.15096.1 >prot_H-elongata_contig74060.15096.1 ID=prot_H-elongata_contig74060.15096.1|Name=mRNA_H-elongata_contig74060.15096.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp MYELDKDGTKVYIDPLDWWWVRCTDFPHLASLARRVLAIPATQAESERLFback to top mRNA from alignment at H-elongata_contig74060:915..1160+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig74060.15096.1 ID=mRNA_H-elongata_contig74060.15096.1|Name=mRNA_H-elongata_contig74060.15096.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at H-elongata_contig74060:915..1160+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig74060:915..1160+ >mRNA_H-elongata_contig74060.15096.1 ID=mRNA_H-elongata_contig74060.15096.1|Name=mRNA_H-elongata_contig74060.15096.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig74060:915..1160+ (Himanthalia elongata Himel1 dioecious)back to top |