mRNA_H-elongata_contig74009.15091.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig74009.15091.1 vs. uniprot
Match: A0A6H5KQ14_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ14_9PHAE) HSP 1 Score: 201 bits (512), Expect = 2.190e-58 Identity = 111/219 (50.68%), Postives = 147/219 (67.12%), Query Frame = 1
Query: 4 RTEGGRVDCVRVSNNMSSAQRVQAHLLDNFRFVEQAMLHKQCRAYAMQNMQAEVLASLGYVAQVLKTGNDNVQRLLAELVAEPSTAQLQYNPNSREFVNPSTAPPSGADVTMATGTSVPHFAELLRDQNVTELVRITPLTAHTEYGHLVALGSEGFCLCTCLRLLIGGLCCRHGLKAM-----HGKELSFNGTCITPRWRDGAATWTMAALAAKPAKLS 645
R +GG V V V +S + V+A L +F FV +AM H++C +A ++++ ++ A+ GY A + TG D V+ LLAELVA+P+ A L Y+ S EF++P A VTMAT TSV HFA+LL DQNV ELVRIT A +E+GHLVALG +GF LCTCLR+L+ GL C H +KA+ + K SFN CI+PRWRD +WTMA LAAKPA+L+
Sbjct: 248 RNKGGAVTRVPV-RKVSPQESVKASFLRHFSFVFEAMEHERCSRHAKEDVEEQIFAAFGYEAVTVATGQDAVRTLLAELVADPTKANLAYDICSGEFIDPGGEAAGPAHVTMATRTSVAHFADLLHDQNVEELVRITIFNAQSEFGHLVALGPDGFFLCTCLRMLVYGLPCPHCIKALAHMRGNDKVFSFNAACISPRWRDSETSWTMAHLAAKPARLA 465
BLAST of mRNA_H-elongata_contig74009.15091.1 vs. uniprot
Match: D8LSE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE5_ECTSI) HSP 1 Score: 186 bits (472), Expect = 2.760e-53 Identity = 106/216 (49.07%), Postives = 138/216 (63.89%), Query Frame = 1
Query: 1 RRTEGGRVDCVRVSNNMSSAQRVQAHLLDNFRFVEQAMLHKQCRAYAMQNMQAEVLASLGYVAQVLKTGNDNVQRLLAELVAEPSTAQLQYNPNSREFVNPSTAPPSGADVTMATGTSVPHFAELLRDQNVTELVRITPLTAHTEYGHLVALGSEGFCLCTCLRLLIGGLCCRHGLKAMHGKELS-FNGTCITPRWRDGAATWTMAALAAKPAKLS 645
RR GG V V V + S + + L F FV A+ ++QC +A ++ +A++L +L Y A + + +RL ELVA+P+ A L Y+ S E V+PS A V+M + TSVPHFAELLRDQNV +VRITP++ +E GHLVALG +GF LCTCLR L+ GL C H +KA+ + S FNG I+PRWRD WTMAALAAKPAKLS
Sbjct: 13 RRNLGGTVARVAVQGH-SYVESFRTKHLRTFNFVLNAVKYEQCSQHATEDTEAQILGALSYEAIPVVRDEEAARRLFEELVADPTKANLTYDTGSGELVDPSIPTSEAAGVSMVSRTSVPHFAELLRDQNVHTVVRITPMSTASECGHLVALGPDGFFLCTCLRQLVYGLLCPHAIKALWYQRASQFNGATISPRWRDSETPWTMAALAAKPAKLS 227
BLAST of mRNA_H-elongata_contig74009.15091.1 vs. uniprot
Match: D7FVI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI8_ECTSI) HSP 1 Score: 186 bits (472), Expect = 1.160e-52 Identity = 106/216 (49.07%), Postives = 138/216 (63.89%), Query Frame = 1
Query: 1 RRTEGGRVDCVRVSNNMSSAQRVQAHLLDNFRFVEQAMLHKQCRAYAMQNMQAEVLASLGYVAQVLKTGNDNVQRLLAELVAEPSTAQLQYNPNSREFVNPSTAPPSGADVTMATGTSVPHFAELLRDQNVTELVRITPLTAHTEYGHLVALGSEGFCLCTCLRLLIGGLCCRHGLKAMHGKELS-FNGTCITPRWRDGAATWTMAALAAKPAKLS 645
RR GG V V V + S + + L F FV A+ ++QC +A ++ +A++L +L Y A + + +RL ELVA+P+ A L Y+ S E V+PS A V+M + TSVPHFAELLRDQNV +VRITP++ +E GHLVALG +GF LCTCLR L+ GL C H +KA+ + S FNG I+PRWRD WTMAALAAKPAKLS
Sbjct: 146 RRNLGGTVARVAVQGH-SYVESFRTKHLRTFNFVLNAVKYEQCSQHATEDTEAQILGALSYEAIPVVRDEEAARRLFEELVADPTKANLTYDTGSGELVDPSIPTSEAAGVSMVSRTSVPHFAELLRDQNVHTVVRITPMSTASECGHLVALGPDGFFLCTCLRQLVYGLLCPHAIKALWYQRASQFNGATISPRWRDSETPWTMAALAAKPAKLS 360
BLAST of mRNA_H-elongata_contig74009.15091.1 vs. uniprot
Match: A0A6H5JXK5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK5_9PHAE) HSP 1 Score: 190 bits (483), Expect = 2.910e-52 Identity = 99/216 (45.83%), Postives = 147/216 (68.06%), Query Frame = 1
Query: 1 RRTEGGRVDCVRVSNNMSSAQRVQAHLLDNFRFVEQAMLHKQCRAYAMQNMQAEVLASLGYVAQVLKTGNDNVQRLLAELVAEPSTAQLQYNPNSREFVNPSTAPPSGADVTMATGTSVPHFAELLRDQNVTELVRITPLTAHTEYGHLVALGSEGFCLCTCLRLLIGGLCCRHGLKAMHGKELS-FNGTCITPRWRDGAATWTMAALAAKPAKLS 645
RR+ GG+V+ V + S+ RV +D FRF+ A+ H++ +AM++ +A+++A+L Y + + + D +RLL +LVA+P+ A+L Y+ S E V+PS P + +TM + TSVPHFA+LLR QNV +VRI+ +T +E+GHLVA+GS+GF LCTCLR L+ GL C H +KA+ + ++ FNG I P WRD + WTM ALAA+PA+LS
Sbjct: 560 RRSTGGKVNKVSMRQAKSAMSRVTTSHVDQFRFILDALAHEKSSTHAMEDTEAQIVAALTYQDRTVVSDADAARRLLDDLVADPAQAKLVYDTRSGELVDPSHETPDASGITMVSRTSVPHFADLLRGQNVDAVVRISKITPPSEFGHLVAVGSDGFFLCTCLRQLVYGLLCPHVIKALWSQRITRFNGASIGPWWRDSSTPWTMEALAARPARLS 775
BLAST of mRNA_H-elongata_contig74009.15091.1 vs. uniprot
Match: A0A6H5JB23_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB23_9PHAE) HSP 1 Score: 187 bits (474), Expect = 1.050e-51 Identity = 104/216 (48.15%), Postives = 145/216 (67.13%), Query Frame = 1
Query: 1 RRTEGGRVDCVRVSNNMSSAQRVQAHLLDNFRFVEQAMLHKQCRAYAMQNMQAEVLASLGYVAQVLKTGNDNVQRLLAELVAEPSTAQLQYNPNSREFVNPSTAPPSGADVTMATGTSVPHFAELLRDQNVTELVRITPLTAHTEYGHLVALGSEGFCLCTCLRLLIGGLCCRHGLKAMHGKELS-FNGTCITPRWRDGAATWTMAALAAKPAKLS 645
R+++GGR+ +S+ MSS + V+ LL +F FV A+ H++ +A+++ +A+V+A+LGY A L G D + LL ELVA+ A+L Y+ +S + ++P A A V+M + TSVPHFA LLRDQNV +VR++ +T +E+GHLVALG +GF LCTCLR L GL C HGLKAM + + FNG I+PRWR+ W MA LAAKPA LS
Sbjct: 469 RKSDGGRLPRAPLSS-MSSMENVKRGLLKHFSFVVDAVKHERSSTHAIKDTEAQVVAALGYNATCLVRGEDEARLLLDELVADADKAKLWYDTSSGDLIDPLQATTGAAGVSMVSRTSVPHFAHLLRDQNVNSVVRVSMITPPSEFGHLVALGPDGFFLCTCLRQLEHGLLCPHGLKAMWTEGVDRFNGATISPRWRESETPWLMADLAAKPATLS 683
BLAST of mRNA_H-elongata_contig74009.15091.1 vs. uniprot
Match: D8LJH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH3_ECTSI) HSP 1 Score: 185 bits (470), Expect = 1.290e-51 Identity = 106/216 (49.07%), Postives = 138/216 (63.89%), Query Frame = 1
Query: 1 RRTEGGRVDCVRVSNNMSSAQRVQAHLLDNFRFVEQAMLHKQCRAYAMQNMQAEVLASLGYVAQVLKTGNDNVQRLLAELVAEPSTAQLQYNPNSREFVNPSTAPPSGADVTMATGTSVPHFAELLRDQNVTELVRITPLTAHTEYGHLVALGSEGFCLCTCLRLLIGGLCCRHGLKAMHGKELS-FNGTCITPRWRDGAATWTMAALAAKPAKLS 645
RR GG V V V + S + + L F FV A+ ++QC +A ++ +A++L +L Y A + + +RL ELVA+P+ A L Y+ S E V+PS A V+M + TSVPHFAELLRDQNV +VRITP++ +E GHLVALG +GF LCTCLR L+ GL C H +KA+ + S FNG I+PRWRD WTMAALAAKPAKLS
Sbjct: 146 RRNLGGTVARVAVQEH-SYVESFRTKHLRTFNFVLNAVKYEQCSQHATEDTEAQILGALSYEAIPVVRDEEAARRLFEELVADPTKANLTYDTGSGELVDPSIPTSEAACVSMVSRTSVPHFAELLRDQNVHTVVRITPMSTASECGHLVALGPDGFFLCTCLRQLVYGLLCPHAIKALWYQRASQFNGATISPRWRDSETPWTMAALAAKPAKLS 360
BLAST of mRNA_H-elongata_contig74009.15091.1 vs. uniprot
Match: A0A6H5K1S8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S8_9PHAE) HSP 1 Score: 182 bits (462), Expect = 4.160e-50 Identity = 103/211 (48.82%), Postives = 128/211 (60.66%), Query Frame = 1
Query: 7 TEGGRVDCVRVSNNMSSAQRVQAHLLDNFRFVEQAMLHKQCRAYAMQNMQAEVLASLGYVAQVLKTGNDNVQRLLAELVAEPSTAQLQYNPNSREFVNPSTAPPSGADVTMATGTSVPHFAELLRDQNVTELVRIT-PLTAHTEYGHLVALGSEGFCLCTCLRLLIGGLCCRHGLKAMHGKELSFNGTCITPRWRDGAATWTMAALAAKPA 636
T GG + VRV S V+ L +F+FV MLH C A+AM++M E LA++GY A+ L TGND+V RLL + VA P A L Y + DVT+AT TS+ FAELL+DQ + LVR++ T+Y LVALG +GF LCTCLR+L+ GL CRH L+AM G +L F G CI PRWRDG WTM LAAKPA
Sbjct: 187 TTGGPIQRVRVPTQSSFGD-VRDSWLADFKFVHDGMLHAGCSAFAMKDMSDEALAAVGYSAETLATGNDDVHRLLTDFVANPPQAGLLYETDV-------------GDVTLATRTSIEFFAELLKDQVLDRLVRVSRSFGDQTKYCQLVALGPDGFFLCTCLRILVDGLGCRHALRAMRGTDLGFTGACIAPRWRDGIMPWTMGRLAAKPA 383
BLAST of mRNA_H-elongata_contig74009.15091.1 vs. uniprot
Match: A0A6H5JGY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY2_9PHAE) HSP 1 Score: 181 bits (458), Expect = 7.900e-49 Identity = 96/200 (48.00%), Postives = 137/200 (68.50%), Query Frame = 1
Query: 49 MSSAQRVQAHLLDNFRFVEQAMLHKQCRAYAMQNMQAEVLASLGYVAQVLKTGNDNVQRLLAELVAEPSTAQLQYNPNSREFVNPSTAPPSGADVTMATGTSVPHFAELLRDQNVTELVRITPLTAHTEYGHLVALGSEGFCLCTCLRLLIGGLCCRHGLKAMHGKEL-SFNGTCITPRWRDGAATWTMAALAAKPAKLS 645
+SS + V+ LL +F FV A+ +++C +A+++ +A+V+A+LGY A L G D +RLL EL A+P+ A+L Y+ +S + ++PS V+M + TSVPH A+LLRDQNV +VR++ +T +EY HLVALG +GF LCTCLR L+ GL C HGL+A+ + + SFNG I+PRWR+ W MA LAAKPA LS
Sbjct: 727 VSSMENVRRGLLRHFSFVVDAVKNERCSTHAIEDTEAQVVATLGYNATCLVRGEDEARRLLDELAADPAKAKLWYDTSSGDPMDPSQPTTEAPGVSMVSRTSVPHVADLLRDQNVNAVVRVSMITPLSEYSHLVALGPDGFFLCTCLRQLVYGLLCPHGLEALWAEGVVSFNGAIISPRWRESETPWLMAELAAKPASLS 926
BLAST of mRNA_H-elongata_contig74009.15091.1 vs. uniprot
Match: A0A6H5JPJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ2_9PHAE) HSP 1 Score: 164 bits (416), Expect = 1.980e-46 Identity = 100/221 (45.25%), Postives = 126/221 (57.01%), Query Frame = 1
Query: 52 SSAQRVQAHLLDNFRFVEQAMLHKQCRAYAMQ-----------------------NMQAEVLASLGYVAQVLKTGNDNVQRLLAELVAEPSTAQLQYNPNSREFVNPSTAPPSGADVTMATGTSVPHFAELLRDQNVTELVRITPLTAHTEYGHLVALGSEGFCLCTCLRLLIGGLCCRHGLKAMHGKELSFNGTCITPRWRDGAATWTMAALAAKPAKLS 645
SS + V+A L +F FV+ M C AY++ +M E LA++GY A+ L TGN +VQRLLA+LVA P+ A L Y S DVT+ T TSV FAELLRDQ + LVR+T + + T + HLVALG +GF LCT LR+L+ GL RH L+A+H +L F G CI PRWRDG WTMA LAAKPA L+
Sbjct: 4 SSFEVVKARWLGSFDFVQTGMRDAGCSAYSLTVGLAFISLAMGGRFWCRSFQAFGDMSDEALAAMGYKAETLATGNCDVQRLLADLVANPAGAGLLYETTS-------------GDVTLTTRTSVKFFAELLRDQILERLVRVTNVGSQTNHCHLVALGPDGFFLCTYLRILVEGLGYRHALRAIHDADLGFTGACIAPRWRDGIMPWTMAPLAAKPAVLA 211
BLAST of mRNA_H-elongata_contig74009.15091.1 vs. uniprot
Match: A0A6H5KFX3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX3_9PHAE) HSP 1 Score: 171 bits (433), Expect = 6.760e-46 Identity = 95/203 (46.80%), Postives = 122/203 (60.10%), Query Frame = 1
Query: 34 RVSNNMSSAQRVQAHLLDNFRFVEQAMLHKQCRAYAMQNMQAEVLASLGYVAQVLKTGNDNVQRLLAELVAEPSTAQLQYNPNSREFVNPSTAPPSGADVTMATGTSVPHFAELLRDQNVTELVRITPLTAH--TEYGHLVALGSEGFCLCTCLRLLIGGLCCRHGLKAMHGKELSFNGTCITPRWRDGAATWTMAALAAKPA 636
R S + V L+ F +V +AM H +C AYAM++M E LA++ Y ++L TGN++V R +A +V++P+ A L Y+P S G D T T TSV FAELL DQ + +LVRIT + YGHLVALG +GF LCTCLRLL+ GL CRHGL+A+ + FNG CI RWRD WTM LAAK A
Sbjct: 268 RTQQAASPLETVTNSWLEGFDYVRRAMRHVECSAYAMKDMSTEALAAMAYDVEILTTGNEDVHREIARIVSDPAIAGLSYDPTS-----------GGGDGTWTTRTSVKFFAELLEDQVLDKLVRITRSFSDGGPNYGHLVALGPDGFVLCTCLRLLVYGLGCRHGLRAVRDTDFGFNGGCIASRWRDSTQPWTMEHLAAKRA 459 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74009.15091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig74009.15091.1 >prot_H-elongata_contig74009.15091.1 ID=prot_H-elongata_contig74009.15091.1|Name=mRNA_H-elongata_contig74009.15091.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=215bp RRTEGGRVDCVRVSNNMSSAQRVQAHLLDNFRFVEQAMLHKQCRAYAMQNback to top mRNA from alignment at H-elongata_contig74009:9..1060- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig74009.15091.1 ID=mRNA_H-elongata_contig74009.15091.1|Name=mRNA_H-elongata_contig74009.15091.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1052bp|location=Sequence derived from alignment at H-elongata_contig74009:9..1060- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig74009:9..1060- >mRNA_H-elongata_contig74009.15091.1 ID=mRNA_H-elongata_contig74009.15091.1|Name=mRNA_H-elongata_contig74009.15091.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1290bp|location=Sequence derived from alignment at H-elongata_contig74009:9..1060- (Himanthalia elongata Himel1 dioecious)back to top |