mRNA_H-elongata_contig73928.15082.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Match: UPI001659326E (leucine-rich repeat domain-containing protein n=1 Tax=Flavobacterium johnsoniae TaxID=986 RepID=UPI001659326E) HSP 1 Score: 60.1 bits (144), Expect = 4.440e-9 Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 1 DEDALLKIYDSLGGSFWTNNSGWCTNASLADW--------HGVDIKDNYVSGLDLGSNNLT 159
++DALL IY+SLGGS W NN+GW + +A W +GV ++DN+V LDL N L+
Sbjct: 102 EKDALLAIYNSLGGSGWINNTGWNASNPVASWDEQTGTGWYGVTVEDNHVVRLDLNYNRLS 162
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Match: UPI0007FB3066 (PL29 family lyase N-terminal domain-containing protein n=1 Tax=Butyricimonas TaxID=574697 RepID=UPI0007FB3066) HSP 1 Score: 59.3 bits (142), Expect = 8.300e-9 Identity = 22/57 (38.60%), Postives = 40/57 (70.18%), Query Frame = 1
Query: 1 DEDALLKIYDSLGGSFWTNNSGWCTNASLADWHGVDI-KDNYVSGLDLGSNNLTGEL 168
+ +AL+ +Y++ G+ WT + W ++ +++WHG++ KD + +DLGSNNL+GEL
Sbjct: 542 EREALMDLYNATNGTSWTKQTNWGSDKPVSEWHGINCRKDGTIYEIDLGSNNLSGEL 598
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Match: A0A3B0BVE1_9FLAO (Uncharacterized protein n=2 Tax=Ulvibacterium marinum TaxID=2419782 RepID=A0A3B0BVE1_9FLAO) HSP 1 Score: 59.3 bits (142), Expect = 8.350e-9 Identity = 23/57 (40.35%), Postives = 38/57 (66.67%), Query Frame = 1
Query: 1 DEDALLKIYDSLGGSFWTNNSGWCTNASLADWHGVDIKDN-YVSGLDLGSNNLTGEL 168
+ AL+ +++++GG+ WT N+GW T+A + DW G+ D +V G+DL N L GE+
Sbjct: 2658 ERQALIDLFEAMGGTNWTTNTGWNTDAPVCDWFGITTDDEAHVIGVDLPDNGLRGEI 2714
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Match: A0A7X3WZA7_9BACT (Uncharacterized protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3WZA7_9BACT) HSP 1 Score: 57.4 bits (137), Expect = 3.980e-8 Identity = 21/55 (38.18%), Postives = 36/55 (65.45%), Query Frame = 1
Query: 4 EDALLKIYDSLGGSFWTNNSGWCTNASLADWHGVDIKDNYVSGLDLGSNNLTGEL 168
++ Y++ GGS WT++S W T+A ++ W GV ++D+ V+ L+L N L+G L
Sbjct: 1022 QEVFAAFYEATGGSSWTSDSNWLTDAPVSSWFGVTVEDSLVTALELPGNGLSGML 1076
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Match: UPI001AAD6A5E (T9SS type A sorting domain-containing protein n=1 Tax=Winogradskyella sp. DF17 TaxID=2819984 RepID=UPI001AAD6A5E) HSP 1 Score: 56.6 bits (135), Expect = 7.340e-8 Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 1 DEDALLKIYDSLGGSFWTNNSGWC-TNASLADWHGVDIKDN-YVSGLDLGSNNLTGEL 168
D LL +Y+SLGG+ W++N W T+ +A W GV + DN V GL+L +NNLTG L
Sbjct: 271 DYSNLLDVYNSLGGTNWSDNVNWLDTSLPIAMWTGVSLSDNGSVGGLNLPNNNLTGNL 328
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Match: A0A7X4EDX9_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4EDX9_9BACT) HSP 1 Score: 56.2 bits (134), Expect = 1.020e-7 Identity = 22/56 (39.29%), Postives = 34/56 (60.71%), Query Frame = 1
Query: 1 DEDALLKIYDSLGGSFWTNNSGWCTNASLADWHGVDIKDNYVSGLDLGSNNLTGEL 168
D AL +Y + G W +N+ W ++ L +W+GVD+ D V L+LG NNL G++
Sbjct: 953 DRAALEALYHATRGDDWKDNTNWLSDEPLEEWYGVDVADGRVDHLNLGKNNLDGQI 1008
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Match: A0A6I2MK65_9FLAO (Uncharacterized protein n=2 Tax=Maribacter luteus TaxID=2594478 RepID=A0A6I2MK65_9FLAO) HSP 1 Score: 55.8 bits (133), Expect = 1.240e-7 Identity = 23/56 (41.07%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 1 DEDALLKIYDSLGGSFWTNNSGWCTNASLADWHGVDIKDNYVSGLDLGSNNLTGEL 168
+++ LL++Y + G WT W N ++ WHGV++KD++V GL+L +NNL G+L
Sbjct: 34 EKEVLLELYRNTHGENWT--IPWSLNKPVSKWHGVEVKDDHVVGLNLFNNNLVGQL 87
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Match: A0A7X3R7H5_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3R7H5_9BACT) HSP 1 Score: 55.8 bits (133), Expect = 1.360e-7 Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 1
Query: 1 DEDALLKIYDSLGGSFWTNNSGWCTNASLADWHGVDIK-DNYVSGLDLGSNNLTGEL 168
D L+ +Y++L G W + W ++ L WHGV + D V+GLDL SN+L+GEL
Sbjct: 121 DRAVLVAVYNALRGRVWMKKTNWLSSLPLGAWHGVTVNPDGRVTGLDLQSNSLSGEL 177
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Match: UPI001FCB66A0 (Two component regulator three Y domain protein n=1 Tax=Flavobacterium fluviatile TaxID=1862387 RepID=UPI001FCB66A0) HSP 1 Score: 54.3 bits (129), Expect = 2.520e-7 Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 1
Query: 1 DEDALLKIYDSLGGSFWTNNSGWCTNASLADWHGVDIKDNYVSGLDLGSNNLTGEL 168
++DALLK+Y + G WT W S++ WHGV+I + V GL+L NNL G+L
Sbjct: 16 EKDALLKLYHTTKGEEWTIK--WDLALSVSTWHGVEISNGKVVGLNLAGNNLKGQL 69
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Match: A0A2G6THC0_9FLAO (Leucine rich repeat (LRR) protein n=2 Tax=unclassified Flavobacterium TaxID=196869 RepID=A0A2G6THC0_9FLAO) HSP 1 Score: 53.5 bits (127), Expect = 7.980e-7 Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 1
Query: 1 DEDALLKIYDSLGGSFWTNNSGWCTNASLADWHGVDIKDNYVSGLDLGSNNLTGEL 168
++DAL+K+Y + GS W W + S++ W+GV +K+ V+ L+LG NNL G+L
Sbjct: 26 EKDALIKLYYATNGSQWKIK--WDLSLSVSTWYGVQVKNGKVTALNLGDNNLEGQL 79 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig73928.15082.1 >prot_H-elongata_contig73928.15082.1 ID=prot_H-elongata_contig73928.15082.1|Name=mRNA_H-elongata_contig73928.15082.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp DEDALLKIYDSLGGSFWTNNSGWCTNASLADWHGVDIKDNYVSGLDLGSNback to top mRNA from alignment at H-elongata_contig73928:2691..2867+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig73928.15082.1 ID=mRNA_H-elongata_contig73928.15082.1|Name=mRNA_H-elongata_contig73928.15082.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig73928:2691..2867+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig73928:2691..2867+ >mRNA_H-elongata_contig73928.15082.1 ID=mRNA_H-elongata_contig73928.15082.1|Name=mRNA_H-elongata_contig73928.15082.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig73928:2691..2867+ (Himanthalia elongata Himel1 dioecious)back to top |