mRNA_H-elongata_contig73687.15061.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Match: D7G1M3_ECTSI (SpoU_methylase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M3_ECTSI) HSP 1 Score: 256 bits (654), Expect = 2.320e-79 Identity = 141/210 (67.14%), Postives = 158/210 (75.24%), Query Frame = 1
Query: 1 RSADTARAAEVITCGYTPHPGGHGEDKVRKTAFGSIDAVAHRHFEDPVDAVLSLRAAGAFVCALETTEGASSLFDVVFPLPSTPAG-----SSTRSDTSDGGAGRSVDPGVSVERRASEAQGDKP-------LSGGTEA-FELTRGGVVALVLGNEVTGVDERVLGRCDLVVELPVFGLKNSLNVASAGTVALYEILRQWAEAGRLAGAG 591
RSADTAR AEVITCG+TPHPGGHGE+KVRKT FGS+DAVAHRHFEDP +AV SL+AAGAFVCALETT+ ASSLFDV FPLP G +++ D G G V + E +EA+ K L GG+ EL GGVVALVLGNEVTGVDERVLG CDLVVE+PVFGLKNSLNVASAGTV LYE+LRQW+ AGRLAG+G
Sbjct: 359 RSADTARVAEVITCGFTPHPGGHGEEKVRKTGFGSVDAVAHRHFEDPSEAVRSLKAAGAFVCALETTDNASSLFDVRFPLPPALEGKARPKNASAVDAGTAGGGDVVRGSFAAEDSENEARAPKTDGRAVERLDGGSRGGLELEEGGVVALVLGNEVTGVDERVLGLCDLVVEVPVFGLKNSLNVASAGTVVLYEVLRQWSVAGRLAGSG 568
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Match: A0A836CKA2_9STRA (SpoU_methylase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKA2_9STRA) HSP 1 Score: 135 bits (339), Expect = 5.030e-33 Identity = 91/204 (44.61%), Postives = 108/204 (52.94%), Query Frame = 1
Query: 1 RSADTARAAEVITCGYTPHPGGHGEDKVRKTAFGSIDAVAHRHFEDPVDAVLSLRAAGAFVCALETTEGASSLFDV-VFPLPSTPAGSSTRSDTSDGGAGRSVDPGVSVERR-------------ASEAQGDKPLSGGTEAFELTRGGVVALVLGNEVTGVDERVLGRCDLVVELPVFGLKNSLNVASAGTVALYEILRQWAEA 570
RSADTA AAE++TCG TPHP G GEDK+RKTAF S+D V RHF AV +LRA G V A+ETT A+++F +FP V V V +R G + A+ +A VLG+EVTGVD VL CD VVELPV+G+KNSLNV SA T ALYE LRQ A
Sbjct: 393 RSADTASAAEIVTCGLTPHPSGPGEDKLRKTAFSSLDTVPSRHFNSTAGAVRALRAEGYRVLAMETTSDATNMFTTDLFPAH--------------------VVVEVVVAKRHYXXXXXXXXXXXXXXXXXXXXXXGDSGAYRP-----LAFVLGHEVTGVDVSVLRECDGVVELPVYGIKNSLNVCSAATAALYEALRQLKAA 571
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Match: A0A2E6CDK8_9BACT (RNA methyltransferase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2E6CDK8_9BACT) HSP 1 Score: 103 bits (256), Expect = 5.640e-24 Identity = 68/191 (35.60%), Postives = 86/191 (45.03%), Query Frame = 1
Query: 1 RSADTARAAEVITCGYTPHPGGHGEDKVRKTAFGSIDAVAHRHFEDPVDAVLSLRAAGAFVCALETTEGASSLFDVVFPLPSTPAGSSTRSDTSDGGAGRSVDPGVSVERRASEAQGDKPLSGGTEAFELTRGGVVALVLGNEVTGVDERVLGRCDLVVELPVFGLKNSLNVASAGTVALYEILRQWAEAG 573
R+AD AR AEV+TCGYT HP K+ KTA G++D V RHFE A+ LR G V ALETT + +V +P P +A VLGNE GV+ RCD ++E+P++G KNSL VA A VA +E+LRQW G
Sbjct: 54 RTADAARIAEVLTCGYTAHP---PHKKLDKTALGTLDFVPTRHFETSSHALDYLRDEGXAVWALETTSHSVCYTEVDYPQP------------------------------------------------------LAXVLGNEALGVERATXERCDQMLEIPMYGYKNSLXVAGAAAVACFEVLRQWRTCG 187
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Match: R1ED08_EMIHU (SpoU_methylase domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ED08_EMIHU) HSP 1 Score: 87.8 bits (216), Expect = 5.450e-17 Identity = 66/181 (36.46%), Postives = 80/181 (44.20%), Query Frame = 1
Query: 1 RSADTARAAEVITCGYTPHPGGHGEDKVRKTAFGSIDAVAHRHFEDPVDAVLSLRAAGAFVCALETTEGASSLFDVVFPLPSTPAGSSTRSDTSDGGAGRSVDPGVSVERRASEAQGDKPLSGGTEAFELTRGGVVALVLGNEVTGVDERVLGRCDLVVELPVFGLKNSLNVASAGTVALY 543
R+ADTAR AEVITCG+TPHP K+ KTAFG+I++ V V A+ETTE + + V FP P G VALVLGNE GVD VL D +VE+P FG+KNSLNVASA TV ++
Sbjct: 242 RTADTARCAEVITCGFTPHP---PNPKLAKTAFGAIESAVRXXXXXXXXXVA--------VYAMETTERSQAYSTVAFP----PGG-------------------------------------------------VALVLGNEQIGVDTDVLAAVDGIVEIPTFGVKNSLNVASAATVVVF 358
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Match: R1CTC7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CTC7_EMIHU) HSP 1 Score: 82.4 bits (202), Expect = 3.540e-15 Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 1
Query: 406 VALVLGNEVTGVDERVLGRCDLVVELPVFGLKNSLNVASAGTVALYEILRQWAE 567
VA+VLGNEVTGVD+ V+ CD VVE+PVFG+KNSLNVA +VALYE+LR+W +
Sbjct: 263 VAIVLGNEVTGVDKAVMEECDAVVEIPVFGVKNSLNVACCASVALYEVLRRWGK 316
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Match: A0A7S2YLJ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YLJ2_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 1.570e-14 Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query: 382 FELTRGGVVALVLGNEVTGVDERVLGRCDLVVELPVFGLKNSLNVASAGTVALYEILRQW 561
++ ++G VALVLGNEVTGV VL + D++VE+P +G+KNSLNVAS + LYEILRQW
Sbjct: 54 YDASKG--VALVLGNEVTGVTASVLPQMDMIVEIPTYGVKNSLNVASCAPIVLYEILRQW 111
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Match: A0A7S2E2W0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E2W0_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 5.450e-14 Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1
Query: 409 ALVLGNEVTGVDERVLGRCDLVVELPVFGLKNSLNVASAGTVALYEILRQW 561
AL+LGNEVTGVD VL CD +VE+P GLKNSLNVASA +V ++E+LRQW
Sbjct: 210 ALILGNEVTGVDTAVLEECDFIVEIPTLGLKNSLNVASASSVIVFEVLRQW 260
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Match: A0A7S1BMN9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMN9_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 7.160e-14 Identity = 45/86 (52.33%), Postives = 53/86 (61.63%), Query Frame = 1
Query: 304 VDPGVSVERRASEAQGDKPLSGGTEAFELTRGGVVALVLGNEVTGVDERVLGRCDLVVELPVFGLKNSLNVASAGTVALYEILRQW 561
D V R EA+G + S + L G ALVLGNEVTGVD V+ D +VE+P+FG KNSLNVA+A V LYEILRQW
Sbjct: 139 TDRSVCYSREVGEAEGTESPSFRGPLY-LKEGKGTALVLGNEVTGVDTEVMDALDGLVEVPMFGTKNSLNVAAAAPVVLYEILRQW 223
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Match: A0A382QX96_9ZZZZ (SpoU_methylase domain-containing protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382QX96_9ZZZZ) HSP 1 Score: 75.5 bits (184), Expect = 9.040e-14 Identity = 39/70 (55.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query: 385 ELTRGGVVALVLGNEVTGVDERVLGRCDLVVELPVFGLKNSLNVASAGTVALYEILRQWAEAGRLAGAGP 594
E+T VALVLGNE GV+ VL RCD ++E+PVFG KNSLNVA V +YEILRQW G P
Sbjct: 86 EVTYPRPVALVLGNEALGVERDVLDRCDELLEVPVFGYKNSLNVACTAAVVVYEILRQWGYQPSPTGPPP 155
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Match: A0A0M0JXU3_9EUKA (tRNA rRNA methyltransferase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JXU3_9EUKA) HSP 1 Score: 76.6 bits (187), Expect = 1.320e-13 Identity = 39/69 (56.52%), Postives = 46/69 (66.67%), Query Frame = 1
Query: 406 VALVLGNEVTGVDERVLGRCDLVVELPVFGLKNSLNVASAGTVALYEILRQWAEAGRLAGAGPKIDLDP 612
VALVLGNEV+GVD VL CD V+ +PVFG+KNSLNVA +ALYE+LR+W G P D P
Sbjct: 159 VALVLGNEVSGVDAAVLAVCDAVLVVPVFGVKNSLNVACCAAIALYEVLRRW-------GKYPSADAAP 220 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig73687.15061.1 >prot_H-elongata_contig73687.15061.1 ID=prot_H-elongata_contig73687.15061.1|Name=mRNA_H-elongata_contig73687.15061.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp RSADTARAAEVITCGYTPHPGGHGEDKVRKTAFGSIDAVAHRHFEDPVDAback to top mRNA from alignment at H-elongata_contig73687:97..1649+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig73687.15061.1 ID=mRNA_H-elongata_contig73687.15061.1|Name=mRNA_H-elongata_contig73687.15061.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1553bp|location=Sequence derived from alignment at H-elongata_contig73687:97..1649+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig73687:97..1649+ >mRNA_H-elongata_contig73687.15061.1 ID=mRNA_H-elongata_contig73687.15061.1|Name=mRNA_H-elongata_contig73687.15061.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig73687:97..1649+ (Himanthalia elongata Himel1 dioecious)back to top |