mRNA_H-elongata_contig119510.1504.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119510.1504.1
Unique NamemRNA_H-elongata_contig119510.1504.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig119510.1504.1 vs. uniprot
Match: A0A836CJ26_9STRA (NADP-dependent oxidoreductase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ26_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.420e-30
Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:    1 LTGKYDGLEQASPDARLNRFQGFMNRYRNSDSAKAVKKYAEIADMIGLTPTQLSLAWVYSREFITSTIIGATNLTQLRANLRALNCPVTQPAYEAIQNVY 300
            LTGKY   +  +  +RLN F+G+M RYRNS S  AVK Y E+A  +GLTPTQL+LAW Y+R F+TSTI+GAT++ QLR N+ A NCP+T+ A + I+ VY
Sbjct:  265 LTGKYQDSDSDNSKSRLNHFKGYMARYRNSMSEAAVKAYVEVAAEVGLTPTQLALAWCYTRPFVTSTIVGATSVEQLRENIMAYNCPITEQADDMIREVY 364          
BLAST of mRNA_H-elongata_contig119510.1504.1 vs. uniprot
Match: A0A6H5KYK6_9PHAE (Aldo_ket_red domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYK6_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.110e-30
Identity = 59/102 (57.84%), Postives = 75/102 (73.53%), Query Frame = 1
Query:    1 LTGKYDGLEQASPDARLNRFQGFMNRYRNSDSAKAVKKYAEIADMIGLTPTQLSLAWVYSREFITSTIIGATNLTQLRANLRALNCPVTQPAYEAIQNVYDE 306
            L+GKY   +   PDARLN+F G+ +RYR  +  +   +YA+IA  IGLTP Q++LAWVYSREFITSTI+GAT    LR NLRALNCPVT+ A+E I  V++E
Sbjct:  325 LSGKYLDPDVPVPDARLNKFPGYYSRYRTPECIECTARYAKIAADIGLTPAQMALAWVYSREFITSTIVGATTTESLRENLRALNCPVTEEAHEKIVAVHEE 426          
BLAST of mRNA_H-elongata_contig119510.1504.1 vs. uniprot
Match: A0A835Z0T2_9STRA (NADP-dependent oxidoreductase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0T2_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.710e-28
Identity = 54/100 (54.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:    1 LTGKYDGLEQASPDARLNRFQGFMNRYRNSDSAKAVKKYAEIADMIGLTPTQLSLAWVYSREFITSTIIGATNLTQLRANLRALNCPVTQPAYEAIQNVY 300
            LTGKY         +RL+ F+G+M RYRNS S  AVK+Y ++A   GLTPTQL+LAW Y+R ++TSTI+GAT   QLR N+ A NCP+T+   +AIQ VY
Sbjct:  300 LTGKYQDPNYDDSKSRLSFFKGYMGRYRNSFSEAAVKEYMQVAQEAGLTPTQLALAWCYTRPYVTSTIVGATTCDQLRDNIMAYNCPITEETTKAIQQVY 399          
BLAST of mRNA_H-elongata_contig119510.1504.1 vs. uniprot
Match: A0A813GU69_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GU69_POLGL)

HSP 1 Score: 97.8 bits (242), Expect = 1.410e-21
Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 1
Query:    1 LTGKY--DGLEQASPDARLNRFQGFMNRYRNSDSAKAVKKYAEIADMIGLTPTQLSLAWVYSREFITSTIIGATNLTQLRANLRALNCPVTQPAYEAIQNVY 300
            L+GKY  D +E   P ARLN F+G+M RYRNSDS  A ++YA +A+   +TPTQL+LAW  SR F+TS+IIGAT+L QL+ NL A    +++ A   I  VY
Sbjct:  597 LSGKYLHDDVE---PGARLNLFKGYMERYRNSDSEAATREYAALAERHNMTPTQLALAWCKSRWFVTSSIIGATSLAQLKDNLDAFEMDLSEDALADIGRVY 695          
BLAST of mRNA_H-elongata_contig119510.1504.1 vs. uniprot
Match: A0A4D9D8L6_9STRA (Aldo_ket_red domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8L6_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.030e-21
Identity = 52/100 (52.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:    1 LTGKYDGLEQASPDARLNRFQGFMNRYRNSDSAKAVKKYAEIADMIGLTPTQLSLAWVYSREFITSTIIGATNLTQLRANLRALNCPVTQPAYEAIQNVY 300
            L+GKY    +AS +ARLNRF G+M RYR   S   V +Y EIA   GLT  QL+L WVYSR F+TSTI+GAT++ QLR NL ALN P+       +  V+
Sbjct:  363 LSGKYMFKGRAS-EARLNRFPGYMARYRTLQSQDCVFEYKEIASRYGLTMAQLALGWVYSRPFVTSTIVGATSVDQLRENLDALNVPIFSNVVHDLSEVF 461          
BLAST of mRNA_H-elongata_contig119510.1504.1 vs. uniprot
Match: A0A2V0P6G7_9CHLO (Aldo keto reductase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P6G7_9CHLO)

HSP 1 Score: 94.7 bits (234), Expect = 8.030e-21
Identity = 50/100 (50.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    1 LTGKYDGLEQASPDARLNRFQGFMNRYRNSDSAKAVKKYAEIADMIGLTPTQLSLAWVYSREFITSTIIGATNLTQLRANLRALNCPVTQPAYEAIQNVY 300
            LTGKY     A   AR N FQG+M RY  S +  A ++YA +A   GLTPTQL+LAW  SR F+TSTIIGAT++ QLR NL A    ++Q   + I ++Y
Sbjct:  284 LTGKYLEGGDAPATARFNLFQGYMERYYKSLARAATEEYAALAKANGLTPTQLALAWCRSRWFVTSTIIGATSVAQLRQNLEAFEVELSQEVIDGINSLY 383          
BLAST of mRNA_H-elongata_contig119510.1504.1 vs. uniprot
Match: A0A2P6TW26_CHLSO (Aldo keto reductase family n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TW26_CHLSO)

HSP 1 Score: 95.1 bits (235), Expect = 1.280e-20
Identity = 53/101 (52.48%), Postives = 67/101 (66.34%), Query Frame = 1
Query:    1 LTGKY-DGLEQASPDARLNRFQGFMNRYRNSDSAKAVKKYAEIADMIGLTPTQLSLAWVYSREFITSTIIGATNLTQLRANLRALNCPVTQPAYEAIQNVY 300
            LTGKY +G +     ARLN FQG+M RY  S + +AV  YAE+A   GLTPTQL+LAWV+SR F+ STIIGAT + QLR ++ A N  +T      I+ VY
Sbjct:  288 LTGKYIEGKDIEK--ARLNLFQGYMARYNKSLAKEAVAAYAEVARQHGLTPTQLALAWVHSRWFVASTIIGATTMEQLRDDIEAFNVQLTPECLADIEQVY 386          
BLAST of mRNA_H-elongata_contig119510.1504.1 vs. uniprot
Match: A0A7S1WPS7_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WPS7_ALECA)

HSP 1 Score: 92.0 bits (227), Expect = 4.030e-20
Identity = 49/100 (49.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:    1 LTGKYDGLEQASPDARLNRFQGFMNRYRNSDSAKAVKKYAEIADMIGLTPTQLSLAWVYSREFITSTIIGATNLTQLRANLRALNCPVTQPAYEAIQNVY 300
            LTGKY  L      ARL+ F G+M RYRNSDS  A K+Y  +A+  GLTPTQL++AW  SR F+TS+IIGAT++ QL+ N+ +    V++   E I  V+
Sbjct:  213 LTGKY--LSSDHEGARLSLFPGYMTRYRNSDSEAATKEYVALAEKHGLTPTQLAIAWCRSRWFVTSSIIGATSVEQLKDNIDSFTVDVSKELEEDILAVF 310          
BLAST of mRNA_H-elongata_contig119510.1504.1 vs. uniprot
Match: A0A7S1SP45_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SP45_9CHLO)

HSP 1 Score: 88.2 bits (217), Expect = 1.030e-19
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    1 LTGKYDGLEQASPDARLNRFQGFMNRYRNSDSAKAVKKYAEIADMIGLTPTQLSLAWVYSREFITSTIIGATNLTQLRANLRALNCPVTQPAYEAIQNVYDE 306
            L+GKY  +     + R N F G+M RY  S +  AV +Y ++A+  G+TP++L+LAW  SR F+TSTIIGAT++ QL+ N+ A N  +T    E I  V+ +
Sbjct:   79 LSGKY--INATPENCRFNLFPGYMERYNKSFAVNAVAEYVKVAEKHGMTPSELALAWCKSRWFVTSTIIGATSMPQLKENINAFNMELTPECIEDINKVFGQ 178          
BLAST of mRNA_H-elongata_contig119510.1504.1 vs. uniprot
Match: A0A7S2XWE6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWE6_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.210e-19
Identity = 42/84 (50.00%), Postives = 62/84 (73.81%), Query Frame = 1
Query:    1 LTGKYDGLEQASPDARLNRFQGFMNRYRNSDSAKAVKKYAEIADMIGLTPTQLSLAWVYSREFITSTIIGATNLTQLRANLRAL 252
            L+ KY G E+++ ++RL  F GFM+RY+ S + KAV  YA+IA  +G+TP + +LAW YSR  +TS+IIGAT++ QL+ N+ AL
Sbjct:  299 LSNKYTGDEESTKNSRLTLFPGFMDRYKQSLAVKAVAAYADIAKQLGMTPAEFALAWCYSRPEVTSSIIGATSVAQLKENMGAL 382          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119510.1504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJ26_9STRA1.420e-3056.00NADP-dependent oxidoreductase domain-containing pr... [more]
A0A6H5KYK6_9PHAE2.110e-3057.84Aldo_ket_red domain-containing protein n=2 Tax=Ect... [more]
A0A835Z0T2_9STRA6.710e-2854.00NADP-dependent oxidoreductase domain-containing pr... [more]
A0A813GU69_POLGL1.410e-2151.96Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A4D9D8L6_9STRA2.030e-2152.00Aldo_ket_red domain-containing protein n=2 Tax=Mon... [more]
A0A2V0P6G7_9CHLO8.030e-2150.00Aldo keto reductase n=1 Tax=Raphidocelis subcapita... [more]
A0A2P6TW26_CHLSO1.280e-2052.48Aldo keto reductase family n=1 Tax=Chlorella sorok... [more]
A0A7S1WPS7_ALECA4.030e-2049.00Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S1SP45_9CHLO1.030e-1942.16Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7S2XWE6_9STRA3.210e-1950.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119510contigH-elongata_contig119510:1139..1821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue9e-26
Seed eggNOG ortholog2880.D8LAT8
KEGG koko:K09338,ko:K14521
KEGG Pathwayko03008,map03008
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG0667@1,KOG1575@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929699.3928235-CDS-H-elongata_contig119510:1138..12731622929699.3928235-CDS-H-elongata_contig119510:1138..1273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119510 1139..1273 +
1691679123.6289904-CDS-H-elongata_contig119510:1138..12731691679123.6289904-CDS-H-elongata_contig119510:1138..1273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119510 1139..1273 +
1622929699.4040377-CDS-H-elongata_contig119510:1647..18211622929699.4040377-CDS-H-elongata_contig119510:1647..1821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119510 1648..1821 +
1691679123.6397202-CDS-H-elongata_contig119510:1647..18211691679123.6397202-CDS-H-elongata_contig119510:1647..1821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119510 1648..1821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119510.1504.1prot_H-elongata_contig119510.1504.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119510 1139..1821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119510.1504.1

>prot_H-elongata_contig119510.1504.1 ID=prot_H-elongata_contig119510.1504.1|Name=mRNA_H-elongata_contig119510.1504.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
LTGKYDGLEQASPDARLNRFQGFMNRYRNSDSAKAVKKYAEIADMIGLTP
TQLSLAWVYSREFITSTIIGATNLTQLRANLRALNCPVTQPAYEAIQNVY
DE*
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mRNA from alignment at H-elongata_contig119510:1139..1821+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119510.1504.1 ID=mRNA_H-elongata_contig119510.1504.1|Name=mRNA_H-elongata_contig119510.1504.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=683bp|location=Sequence derived from alignment at H-elongata_contig119510:1139..1821+ (Himanthalia elongata Himel1 dioecious)
CTAACTGGGAAGTACGACGGCCTCGAACAGGCTTCTCCGGACGCCAGACT CAATCGTTTCCAGGGCTTCATGAACCGCTACCGGAACTCGGACTCCGCAA AAGCGGTCAAGAAATACGCCGAGATCGCGGACATGGTAAGGAGGATATAG GGGTAAGGAGGATATAGGGGTGTACGCTTGACACCAGTTTCGTTCGAGGC CCGGGTTTGCTACGTACCCCGTTCTTGTACAAGATAGTTACTGTATATCT ATAGTTTTGCTCGTGTAATATGGTCACGTTTGAGCCATAAAACAGGGCCC ACGTTAAATGCGATGTATGTAGTGCACAAACCCACTGAGGGTTTTCGCGC GTGACCTGCTATACACACTTACGGTTTGTACGCCGTTCGCCACGCGTACG GCAGTCTGTCGAGATTGGTGAAAATGAGCAGAGCACTTTGCCTATACATC CCCAGTGCTCGTTTTTGTTTGCAACCCCTGCCGCGCACCCGCCGTTTCGA AAACTCCAGATCGGGCTCACCCCGACGCAGCTGTCTTTGGCGTGGGTATA TAGTCGCGAGTTCATCACGTCGACCATAATCGGAGCCACGAACTTAACGC AGCTGAGAGCCAACCTCCGCGCCCTCAACTGCCCGGTCACACAACCGGCG TACGAGGCAATTCAGAATGTCTATGACGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig119510:1139..1821+

>mRNA_H-elongata_contig119510.1504.1 ID=mRNA_H-elongata_contig119510.1504.1|Name=mRNA_H-elongata_contig119510.1504.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig119510:1139..1821+ (Himanthalia elongata Himel1 dioecious)
CTAACTGGGAAGTACGACGGCCTCGAACAGGCTTCTCCGGACGCCAGACT
CAATCGTTTCCAGGGCTTCATGAACCGCTACCGGAACTCGGACTCCGCAA
AAGCGGTCAAGAAATACGCCGAGATCGCGGACATGCTAACTGGGAAGTAC
GACGGCCTCGAACAGGCTTCTCCGGACGCCAGACTCAATCGTTTCCAGGG
CTTCATGAACCGCTACCGGAACTCGGACTCCGCAAAAGCGGTCAAGAAAT
ACGCCGAGATCGCGGACATGATCGGGCTCACCCCGACGCAGCTGTCTTTG
GCGTGGGTATATAGTCGCGAGTTCATCACGTCGACCATAATCGGAGCCAC
GAACTTAACGCAGCTGAGAGCCAACCTCCGCGCCCTCAACTGCCCGGTCA
CACAACCGGCGTACGAGGCAATTCAGAATGTCTATGACGAGTGAATCGGG
CTCACCCCGACGCAGCTGTCTTTGGCGTGGGTATATAGTCGCGAGTTCAT
CACGTCGACCATAATCGGAGCCACGAACTTAACGCAGCTGAGAGCCAACC
TCCGCGCCCTCAACTGCCCGGTCACACAACCGGCGTACGAGGCAATTCAG
AATGTCTATGACGAGTGA
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