mRNA_H-elongata_contig7317.14995.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Match: D7FWP4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWP4_ECTSI) HSP 1 Score: 206 bits (525), Expect = 7.680e-67 Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 1
Query: 28 QMVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 342
+MVNVPKERRTYCK KRCNKHTVHKVTQYK+GKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECK CKAKKQLVIARCKHFELGEKKQATGHQY
Sbjct: 34 EMVNVPKERRTYCKDKRCNKHTVHKVTQYKSGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKLCKAKKQLVIARCKHFELGEKKQATGHQY 138
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Match: A0A835YP36_9STRA (Zinc-binding ribosomal protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP36_9STRA) HSP 1 Score: 193 bits (490), Expect = 5.560e-62 Identity = 93/104 (89.42%), Postives = 100/104 (96.15%), Query Frame = 1
Query: 31 MVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 342
MVNVPKERRTYCK+K+C KHTVHKV+QYK+GKASNFAQGKRRYD KQ+G+GGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVI RCKHFELGEKK+ATGH Y
Sbjct: 1 MVNVPKERRTYCKSKKCGKHTVHKVSQYKSGKASNFAQGKRRYDSKQKGYGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIKRCKHFELGEKKKATGHVY 104
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Match: A0A7S2UXA0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXA0_9STRA) HSP 1 Score: 191 bits (486), Expect = 2.270e-61 Identity = 92/104 (88.46%), Postives = 98/104 (94.23%), Query Frame = 1
Query: 31 MVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 342
MVNVPKERRTYCKAK CNKHT+HKVTQYKAGKASNFAQGKRRYDHKQ+G+GGQTKPIFHKKAKTTKK+ LRLECKECK KKQLVI R KHFELGEKK++TG QY
Sbjct: 1 MVNVPKERRTYCKAKNCNKHTIHKVTQYKAGKASNFAQGKRRYDHKQKGYGGQTKPIFHKKAKTTKKIVLRLECKECKTKKQLVIKRTKHFELGEKKKSTGPQY 104
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Match: F0YGF9_AURAN (RL44_PICJA 60S ribosomal protein L44 n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YGF9_AURAN) HSP 1 Score: 191 bits (484), Expect = 4.580e-61 Identity = 92/104 (88.46%), Postives = 96/104 (92.31%), Query Frame = 1
Query: 31 MVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 342
MVNVPKER+TYCKAK+C KHT HKVTQYKAGKASNFAQGKRRYD KQ GFGGQTKP+FHKKAKTTKKVTLRLECKECKAKKQL I RCKHFELGEKK+ TGH Y
Sbjct: 1 MVNVPKERKTYCKAKKCRKHTTHKVTQYKAGKASNFAQGKRRYDMKQMGFGGQTKPVFHKKAKTTKKVTLRLECKECKAKKQLTIKRCKHFELGEKKKTTGHTY 104
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Match: W7TXG3_9STRA (60s ribosomal protein l44 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXG3_9STRA) HSP 1 Score: 182 bits (463), Expect = 7.290e-58 Identity = 88/104 (84.62%), Postives = 96/104 (92.31%), Query Frame = 1
Query: 31 MVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 342
MV +PKER+T+CK K+C KHTVHKVTQYKAGKASN+AQGKRRYD KQ+G+GGQTKPI HKKAKTTKKVTLRLECKECK KKQLVI R KHFELGEKK+ATGHQY
Sbjct: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Match: A0A7S3NIT2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIT2_9STRA) HSP 1 Score: 182 bits (462), Expect = 1.000e-57 Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 1
Query: 31 MVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQAT 330
MVNVPKERRTYCK K+C KHTVHKVTQYKAGKASNFAQGKRRYD KQ+G+GGQTKPIFHKKAKTTKKV LRLECKECKAKKQL I RCKHFELGEKK++T
Sbjct: 1 MVNVPKERRTYCKGKKCKKHTVHKVTQYKAGKASNFAQGKRRYDAKQQGYGGQTKPIFHKKAKTTKKVVLRLECKECKAKKQLCIKRCKHFELGEKKKST 100
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Match: I6ZGD0_9STRA (Ribosomal protein L44 n=1 Tax=Aurantiochytrium sp. KRS101 TaxID=797128 RepID=I6ZGD0_9STRA) HSP 1 Score: 181 bits (459), Expect = 2.970e-57 Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 1
Query: 31 MVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 342
MVNVPKERRT+CK K+C KHTVHKVTQYKAGKASNFAQGKRRYD KQ+G+GGQTKPIFHKKAKTTKKVTLRLECKECK K Q+ + RCK FELG+KK+A GHQY
Sbjct: 1 MVNVPKERRTFCKGKQCRKHTVHKVTQYKAGKASNFAQGKRRYDRKQKGYGGQTKPIFHKKAKTTKKVTLRLECKECKTKCQIGLKRCKTFELGQKKEAAGHQY 104
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Match: A0A485LSL1_9STRA (Aste57867_25253 protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485LSL1_9STRA) HSP 1 Score: 180 bits (457), Expect = 6.000e-57 Identity = 85/104 (81.73%), Postives = 96/104 (92.31%), Query Frame = 1
Query: 31 MVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 342
MVN+PKERRT+CK K+C KHTVHKVTQYKAGKAS FAQG RRY+ KQ+GFGGQTKP+FHKKAKTTKK+TLR+ECKECKAKKQL I R KHFELGEKK+++GHQY
Sbjct: 1 MVNIPKERRTFCKGKKCRKHTVHKVTQYKAGKASKFAQGARRYNEKQQGFGGQTKPVFHKKAKTTKKITLRMECKECKAKKQLPIKRTKHFELGEKKKSSGHQY 104
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Match: A0A418ASI0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418ASI0_9STRA) HSP 1 Score: 181 bits (459), Expect = 1.100e-56 Identity = 85/105 (80.95%), Postives = 97/105 (92.38%), Query Frame = 1
Query: 28 QMVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 342
QMVN+PKERRT+CK K+C KHTVHKVTQYKAGKAS +AQG RRY+ KQ+GFGGQTKP+FHKKAKTTKK+TLR+ECKECKAKKQL I R KHFELGEKK+++GHQY
Sbjct: 41 QMVNIPKERRTFCKGKKCRKHTVHKVTQYKAGKASKYAQGARRYNEKQQGFGGQTKPVFHKKAKTTKKITLRMECKECKAKKQLPIKRTKHFELGEKKKSSGHQY 145
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Match: A0A7R9UFU1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFU1_9STRA) HSP 1 Score: 179 bits (454), Expect = 1.720e-56 Identity = 83/104 (79.81%), Postives = 94/104 (90.38%), Query Frame = 1
Query: 31 MVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 342
MVNVPKERRTYCK+ C +H +HKVTQYK+GKASNFAQGKRRYDHKQ G+GGQTKPIFHKKAKTTKK+TLRLECK+CK+K LV+ RCKHFE+GEKK+ GHQY
Sbjct: 1 MVNVPKERRTYCKSPICRRHELHKVTQYKSGKASNFAQGKRRYDHKQMGYGGQTKPIFHKKAKTTKKITLRLECKKCKSKSHLVVKRCKHFEIGEKKKTAGHQY 104 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7317.14995.1 >prot_H-elongata_contig7317.14995.1 ID=prot_H-elongata_contig7317.14995.1|Name=mRNA_H-elongata_contig7317.14995.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp MVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFback to top mRNA from alignment at H-elongata_contig7317:2357..4221+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7317.14995.1 ID=mRNA_H-elongata_contig7317.14995.1|Name=mRNA_H-elongata_contig7317.14995.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1865bp|location=Sequence derived from alignment at H-elongata_contig7317:2357..4221+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7317:2357..4221+ >mRNA_H-elongata_contig7317.14995.1 ID=mRNA_H-elongata_contig7317.14995.1|Name=mRNA_H-elongata_contig7317.14995.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig7317:2357..4221+ (Himanthalia elongata Himel1 dioecious)back to top |