mRNA_H-elongata_contig119461.1498.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119461.1498.1
Unique NamemRNA_H-elongata_contig119461.1498.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Match: D7FTR9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTR9_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 8.580e-38
Identity = 71/85 (83.53%), Postives = 76/85 (89.41%), Query Frame = 1
Query:    1 LADPFLAGCLFLCYPRTSARMRLVIPVFMVALVPSFLLPIMRHLWLQAGTGNANFYYFQTIVLNLLWSVFVLQFAAALGKRRKAL 255
            L DP LAGCLFLC+PRTSARMRLVIPV M ALVP+ LLP MRHLWLQAGTGNANFYYFQT+ LN+L +VFVLQFAAAL KRRKAL
Sbjct:  340 LVDPMLAGCLFLCHPRTSARMRLVIPVGMAALVPALLLPTMRHLWLQAGTGNANFYYFQTVGLNVLLAVFVLQFAAALVKRRKAL 424          
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Match: A0A836CN19_9STRA (GPI transamidase subunit PIG-U n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN19_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.500e-11
Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    1 LADPFLAGCLFLCYPRTSARMRLVIPVFMVALVPSFLLPIMRHLWLQAGTGNANFYYFQTIVLNLLWSVFVLQFAAALGKRRKAL 255
            L  P L  CL L +  T AR+R    + ++   P  LLP++   WL+AGTGNAN+ YFQ +  N   +V VLQF AA  +RRKAL
Sbjct:  356 LGAPCLVACLMLPHACTLARVRGGAALVVLGGAPLALLPVVARAWLRAGTGNANYLYFQALAANAAAAVGVLQFVAATVRRRKAL 440          
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Match: A0A2R5GJN2_9STRA (Phosphatidylinositol glycan anchor biosynthesis class U protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJN2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.060e-9
Identity = 32/77 (41.56%), Postives = 46/77 (59.74%), Query Frame = 1
Query:   28 LFLCYPRTSARMRLVIPVFMVALVPSFLLPIMRHLWLQAGTGNANFYYFQTIVLNLLWSVFVLQFAAALGKRRKALA 258
            LF  +P T  RM  V+P+ +  L  S +LP+MRH+WL  G+GNAN+YYFQT++     +   + F  A   R + LA
Sbjct:  414 LFAMHPLTVKRMPYVLPLAIGVLSTSIMLPVMRHMWLTVGSGNANYYYFQTLICQFCATSLFVHFVRATLVRDRVLA 490          
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Match: W4K5N2_HETIT (Uncharacterized protein n=1 Tax=Heterobasidion irregulare (strain TC 32-1) TaxID=747525 RepID=W4K5N2_HETIT)

HSP 1 Score: 54.7 bits (130), Expect = 1.000e-6
Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 1
Query:    1 LADPFLAGCLFLCYPRTSARMRLVIPVFMVALVPSFLLPIMRHLWLQAGTGNANFYYFQTIVLNL 195
            L+DP L   L   +P T A  R  I   ++ L  S LLP+  HLW+ AGTGNANF+Y  T+V  +
Sbjct:  310 LSDPGLFISLISLFPETYAYFRHPIVTTLLHLHASLLLPLFHHLWVAAGTGNANFFYASTLVFGI 374          
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Match: S7RV59_GLOTA (PIG-U-domain-containing protein n=1 Tax=Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617) TaxID=670483 RepID=S7RV59_GLOTA)

HSP 1 Score: 50.8 bits (120), Expect = 2.290e-5
Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = 1
Query:    1 LADPFLAGCLFLCYPRTSARMRLVIPVFMVALVPSFLLPIMRHLWLQAGTGNANFYYFQTIVLNL 195
            LADP L   ++  +P     +   +P  ++ L  S LLP+   LWL  GTGNANF+Y  T+VL +
Sbjct:  321 LADPGLFLSMYSVFPEIFPYLSHPLPTTLLHLHASLLLPLFHSLWLNQGTGNANFFYASTLVLGM 385          
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Match: A0A1Z5K124_FISSO (Phosphatidylinositol glycan, class U n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K124_FISSO)

HSP 1 Score: 50.8 bits (120), Expect = 2.310e-5
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   19 AGCLFLCYPRTSARMRLVIPVFMVALVPSFLLPIMRH-----LWLQAGTGNANFYYFQTIVLNLLWSVFVLQFAAALGKRRKAL 255
            A CL L   ++ AR+R VIP  +   V SF +P+  +     LWL  G+G ANF +FQ +V N   ++  +QF AA  +R KAL
Sbjct:  375 AFCLLLLSSKSLARLR-VIPSLIA--VSSFSIPVALYVVNTWLWLDTGSGEANFMFFQCLVYNAFVAIIFVQFVAACLRRDKAL 455          
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Match: A0A2S5BHU3_9BASI (Uncharacterized protein n=1 Tax=Rhodotorula taiwanensis TaxID=741276 RepID=A0A2S5BHU3_9BASI)

HSP 1 Score: 50.4 bits (119), Expect = 3.130e-5
Identity = 29/77 (37.66%), Postives = 43/77 (55.84%), Query Frame = 1
Query:   16 LAGCLFLCYPRTSARM-RLVIPVFMVALVPSFLLPIMRHLWLQAGTGNANFYYFQTIVLNLLWSVFVLQFAAALGKR 243
            L GC     P  S+ +   ++P++ V L+P+F      HLWL AGTGNANF+Y  T+V  +    + ++   A GKR
Sbjct:  330 LLGCFSEYLPYVSSPLFNTLLPLYAVLLLPAF-----HHLWLSAGTGNANFFYAATLVWAISMGGWAIEAVKAYGKR 401          
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Match: A0A0D2NTY4_HYPSF (Uncharacterized protein n=1 Tax=Hypholoma sublateritium (strain FD-334 SS-4) TaxID=945553 RepID=A0A0D2NTY4_HYPSF)

HSP 1 Score: 50.1 bits (118), Expect = 4.280e-5
Identity = 25/62 (40.32%), Postives = 36/62 (58.06%), Query Frame = 1
Query:    1 LADPFLAGCLFLCYPRTSARMRLVIPVFMVALVPSFLLPIMRHLWLQAGTGNANFYYFQTIV 186
            L+DP L   +   +P   + +R  I   ++ L  S L+P+  HLWL  GTGNANF+Y  T+V
Sbjct:  328 LSDPGLFLSMIAVFPEIHSYLRYPIVTALLHLHASLLMPLFDHLWLNQGTGNANFFYASTLV 389          
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Match: A0A024U9F7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9F7_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 4.290e-5
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 1
Query:   97 VPSFLLPIMRHLWLQAGTGNANFYYFQTIVLNLLWSVFVLQFAAALGKRRKAL 255
            V S L+P+M  LWL  G+GNANF+Y QTIV    +   V QF AA  +R K L
Sbjct:  376 VASVLMPVMGFLWLYPGSGNANFFYNQTIVFQFFYLRVVGQFLAATMRRDKQL 428          
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Match: A0A8H5FWN1_9AGAR (Uncharacterized protein n=1 Tax=Leucoagaricus leucothites TaxID=201217 RepID=A0A8H5FWN1_9AGAR)

HSP 1 Score: 49.3 bits (116), Expect = 7.980e-5
Identity = 24/62 (38.71%), Postives = 35/62 (56.45%), Query Frame = 1
Query:    1 LADPFLAGCLFLCYPRTSARMRLVIPVFMVALVPSFLLPIMRHLWLQAGTGNANFYYFQTIV 186
            L+DP L   +   +P     +R  I   ++ L  + L+P+  HLWL  GTGNANF+Y  T+V
Sbjct:  319 LSDPGLFFSVLSIFPEVHPYLRHPIVTALIHLHAALLMPLFNHLWLNTGTGNANFFYASTLV 380          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FTR9_ECTSI8.580e-3883.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CN19_9STRA2.500e-1145.88GPI transamidase subunit PIG-U n=1 Tax=Tribonema m... [more]
A0A2R5GJN2_9STRA1.060e-941.56Phosphatidylinositol glycan anchor biosynthesis cl... [more]
W4K5N2_HETIT1.000e-644.62Uncharacterized protein n=1 Tax=Heterobasidion irr... [more]
S7RV59_GLOTA2.290e-540.00PIG-U-domain-containing protein n=1 Tax=Gloeophyll... [more]
A0A1Z5K124_FISSO2.310e-540.48Phosphatidylinositol glycan, class U n=1 Tax=Fistu... [more]
A0A2S5BHU3_9BASI3.130e-537.66Uncharacterized protein n=1 Tax=Rhodotorula taiwan... [more]
A0A0D2NTY4_HYPSF4.280e-540.32Uncharacterized protein n=1 Tax=Hypholoma sublater... [more]
A0A024U9F7_9STRA4.290e-550.94Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A8H5FWN1_9AGAR7.980e-538.71Uncharacterized protein n=1 Tax=Leucoagaricus leuc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119461contigH-elongata_contig119461:1761..2018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue1e-30
Seed eggNOG ortholog2880.D7FTR9
Preferred namePIGU
KEGG koko:K05293
KEGG Pathwayko00563,ko01100,map00563,map01100
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009966,GO:0009987,GO:0010646,GO:0012505,GO:0016020,GO:0016021,GO:0016255,GO:0019538,GO:0019637,GO:0023051,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0042765,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046425,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0048583,GO:0050789,GO:0050794,GO:0065007,GO:0071704,GO:0071944,GO:0090407,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902531,GO:1903509,GO:1904892
EggNOG free text desc.attachment of GPI anchor to protein
EggNOG OGsKOG2552@1,KOG2552@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categorysignal peptide
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929699.0108516-CDS-H-elongata_contig119461:1760..20181622929699.0108516-CDS-H-elongata_contig119461:1760..2018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119461 1761..2018 -
1691679123.4797852-CDS-H-elongata_contig119461:1760..20181691679123.4797852-CDS-H-elongata_contig119461:1760..2018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119461 1761..2018 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119461.1498.1prot_H-elongata_contig119461.1498.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119461 1761..2018 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119461.1498.1

>prot_H-elongata_contig119461.1498.1 ID=prot_H-elongata_contig119461.1498.1|Name=mRNA_H-elongata_contig119461.1498.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
LADPFLAGCLFLCYPRTSARMRLVIPVFMVALVPSFLLPIMRHLWLQAGT
GNANFYYFQTIVLNLLWSVFVLQFAAALGKRRKALA
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mRNA from alignment at H-elongata_contig119461:1761..2018-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119461.1498.1 ID=mRNA_H-elongata_contig119461.1498.1|Name=mRNA_H-elongata_contig119461.1498.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at H-elongata_contig119461:1761..2018- (Himanthalia elongata Himel1 dioecious)
CTCGCCGACCCGTTCCTCGCCGGGTGTCTCTTCCTGTGCTACCCCCGAAC ATCGGCCCGGATGCGACTCGTCATCCCAGTCTTCATGGTGGCTCTCGTGC CTTCCTTCCTCCTGCCGATCATGCGCCACTTATGGCTGCAGGCGGGAACC GGGAACGCCAACTTCTACTACTTCCAAACCATCGTCCTGAACCTCTTGTG GTCGGTTTTCGTGTTGCAGTTCGCCGCCGCCCTGGGGAAGAGGCGCAAGG CGCTGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig119461:1761..2018-

>mRNA_H-elongata_contig119461.1498.1 ID=mRNA_H-elongata_contig119461.1498.1|Name=mRNA_H-elongata_contig119461.1498.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig119461:1761..2018- (Himanthalia elongata Himel1 dioecious)
CTCGCCGACCCGTTCCTCGCCGGGTGTCTCTTCCTGTGCTACCCCCGAAC
ATCGGCCCGGATGCGACTCGTCATCCCAGTCTTCATGGTGGCTCTCGTGC
CTTCCTTCCTCCTGCCGATCATGCGCCACTTATGGCTGCAGGCGGGAACC
GGGAACGCCAACTTCTACTACTTCCAAACCATCGTCCTGAACCTCTTGTG
GTCGGTTTTCGTGTTGCAGTTCGCCGCCGCCCTGGGGAAGAGGCGCAAGG
CGCTGGCGCTCGCCGACCCGTTCCTCGCCGGGTGTCTCTTCCTGTGCTAC
CCCCGAACATCGGCCCGGATGCGACTCGTCATCCCAGTCTTCATGGTGGC
TCTCGTGCCTTCCTTCCTCCTGCCGATCATGCGCCACTTATGGCTGCAGG
CGGGAACCGGGAACGCCAACTTCTACTACTTCCAAACCATCGTCCTGAAC
CTCTTGTGGTCGGTTTTCGTGTTGCAGTTCGCCGCCGCCCTGGGGAAGAG
GCGCAAGGCGCTGGCG
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