mRNA_H-elongata_contig72776.14953.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72776.14953.1
Unique NamemRNA_H-elongata_contig72776.14953.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72776.14953.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.570e-6
Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:   19 KTSNRARAREREITVATHNVRTMAVDGPHR-AERVLDVLNVYDRLGCDVIGLQETRRSVHPAFTQAGYSVYCSG 237
            K + + +ARE +++  T NVRT+A  G +     V+ V+ ++   GCDVIGLQETRR    +    GY +  SG
Sbjct:  121 KAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQIWSATGCDVIGLQETRREGQGSIAHDGYVIIWSG 194
[Close]
BLAST of mRNA_H-elongata_contig72776.14953.1 vs. uniprot
Match: A0A6H5L807_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L807_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.610e-6
Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:   19 KTSNRARAREREITVATHNVRTMAVDGPHR-AERVLDVLNVYDRLGCDVIGLQETRRSVHPAFTQAGYSVYCSG 237
            K + + +ARE +++  T NVRT+A  G +     V+ V+ +    GCDVIGLQETRR+   +    GY +  SG
Sbjct:   74 KAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSG 147
[Close]
BLAST of mRNA_H-elongata_contig72776.14953.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.660e-6
Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:   19 KTSNRARAREREITVATHNVRTMAVDGPHR-AERVLDVLNVYDRLGCDVIGLQETRRSVHPAFTQAGYSVYCSG 237
            K + + +ARE +++  T NVRT+A  G +     V+ V+ +    GCDVIGLQETRR+   +    GY +  SG
Sbjct:   69 KAAAKRKAREGDLSFGTFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSG 142
[Close]
BLAST of mRNA_H-elongata_contig72776.14953.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.770e-6
Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:   19 KTSNRARAREREITVATHNVRTMAVDGPHR-AERVLDVLNVYDRLGCDVIGLQETRRSVHPAFTQAGYSVYCSG 237
            K + + +ARE +++  T NVRT+A  G +     V+ V+ +    GCDVIGLQETRR+   +    GY +  SG
Sbjct:  163 KAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSG 236
[Close]
BLAST of mRNA_H-elongata_contig72776.14953.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.800e-6
Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:   19 KTSNRARAREREITVATHNVRTMAVDGPHR-AERVLDVLNVYDRLGCDVIGLQETRRSVHPAFTQAGYSVYCSG 237
            K + + +ARE +++  T NVRT+A  G +     V+ V+ +    GCDVIGLQETRR+   +    GY +  SG
Sbjct:   74 KAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSG 147
[Close]
BLAST of mRNA_H-elongata_contig72776.14953.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 4.750e-6
Identity = 29/74 (39.19%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:   19 KTSNRARAREREITVATHNVRTMAVDGPHR-AERVLDVLNVYDRLGCDVIGLQETRRSVHPAFTQAGYSVYCSG 237
            K + + +ARE +++  T NVRT+A  G +     V+ V+ +    GCDVIGLQETRR    +    GY +  SG
Sbjct:  136 KAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSG 209
[Close]
BLAST of mRNA_H-elongata_contig72776.14953.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 9.840e-6
Identity = 29/68 (42.65%), Postives = 39/68 (57.35%), Query Frame = 1 
Query:   37 RAREREITVATHNVRTMAVDGPHR-AERVLDVLNVYDRLGCDVIGLQETRRSVHPAFTQAGYSVYCSG 237
            +ARE +++  T NVRT+A  G +     V+ V+ +    GCDVIGLQETRR    +    GY V  SG
Sbjct:  117 KAREDDVSFGTFNVRTLAYSGRNPIGHNVMTVMQICSTNGCDVIGLQETRREGQGSIAHDGYVVIWSG 184
[Close]
BLAST of mRNA_H-elongata_contig72776.14953.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.380e-5
Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 1 
Query:   40 AREREITVATHNVRTMAVDGPHR-AERVLDVLNVYDRLGCDVIGLQETRRSVHPAFTQAGYSVYCSG 237
            ARE +++  T NVRT+A  G +     V+ V+ +    GCDVIGLQETRR    +    GY +  SG
Sbjct:  815 AREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSG 881
[Close]
BLAST of mRNA_H-elongata_contig72776.14953.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 3.470e-5
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:   19 KTSNRARAREREITVATHNVRTMAVDGPHR-AERVLDVLNVYDRLGCDVIGLQETRRSVHPAFTQAGYSVYCSG 237
            K + + +ARE +++  T NV T+A  G +     V+ V+ +    GCDVIGLQETRR    +    GY +  SG
Sbjct:  645 KVAGKKKAREGDLSFGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSG 718
[Close]
BLAST of mRNA_H-elongata_contig72776.14953.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 3.960e-5
Identity = 27/68 (39.71%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:   37 RAREREITVATHNVRTMAVDGPHR-AERVLDVLNVYDRLGCDVIGLQETRRSVHPAFTQAGYSVYCSG 237
            +ARE +++  T NV T+A  G +     V+ V+ +    GCDVIGLQETRR    +    GY +  SG
Sbjct:    3 KAREGDLSFGTFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSG 70
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72776.14953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5K5A7_9PHAE1.570e-639.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L807_9PHAE3.610e-639.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV75_9PHAE3.660e-639.19Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K3Q1_9PHAE3.770e-639.19Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JMB4_9PHAE3.800e-639.19Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L660_9PHAE4.750e-639.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDU4_9PHAE9.840e-642.65Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K0W6_9PHAE1.380e-541.79Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K1H7_9PHAE3.470e-537.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZE6_9PHAE3.960e-539.71Endo/exonuclease/phosphatase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72776contigH-elongata_contig72776:2297..2638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931129.8900657-CDS-H-elongata_contig72776:2296..26381622931129.8900657-CDS-H-elongata_contig72776:2296..2638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72776 2297..2638 -
1691679710.3679936-CDS-H-elongata_contig72776:2296..26381691679710.3679936-CDS-H-elongata_contig72776:2296..2638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72776 2297..2638 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72776.14953.1prot_H-elongata_contig72776.14953.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72776 2297..2638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72776.14953.1

>prot_H-elongata_contig72776.14953.1 ID=prot_H-elongata_contig72776.14953.1|Name=mRNA_H-elongata_contig72776.14953.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
RLLRQSKTSNRARAREREITVATHNVRTMAVDGPHRAERVLDVLNVYDRL
GCDVIGLQETRRSVHPAFTQAGYSVYCSGECGEHQWWEDRARWSRASCEN
LHHTCYTPTVVYE*
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mRNA from alignment at H-elongata_contig72776:2297..2638-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72776.14953.1 ID=mRNA_H-elongata_contig72776.14953.1|Name=mRNA_H-elongata_contig72776.14953.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=342bp|location=Sequence derived from alignment at H-elongata_contig72776:2297..2638- (Himanthalia elongata Himel1 dioecious)
CGCCTCCTGCGACAAAGCAAAACGAGCAATCGAGCACGTGCGCGTGAACG
GGAGATCACAGTTGCTACGCACAACGTCCGGACGATGGCGGTGGATGGGC
CGCACAGAGCTGAACGGGTGCTAGATGTTTTGAATGTGTACGATCGACTG
GGGTGCGACGTTATCGGTTTGCAGGAGACCCGCCGTAGTGTACATCCAGC
CTTCACTCAGGCTGGCTACTCGGTGTACTGTAGCGGTGAGTGCGGTGAAC
ACCAATGGTGGGAAGATAGGGCAAGGTGGAGTAGGGCTAGCTGCGAGAAC
CTCCATCACACGTGCTACACGCCCACCGTAGTTTATGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig72776:2297..2638-

>mRNA_H-elongata_contig72776.14953.1 ID=mRNA_H-elongata_contig72776.14953.1|Name=mRNA_H-elongata_contig72776.14953.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig72776:2297..2638- (Himanthalia elongata Himel1 dioecious)
CGCCTCCTGCGACAAAGCAAAACGAGCAATCGAGCACGTGCGCGTGAACG
GGAGATCACAGTTGCTACGCACAACGTCCGGACGATGGCGGTGGATGGGC
CGCACAGAGCTGAACGGGTGCTAGATGTTTTGAATGTGTACGATCGACTG
GGGTGCGACGTTATCGGTTTGCAGGAGACCCGCCGTAGTGTACATCCAGC
CTTCACTCAGGCTGGCTACTCGGTGTACTGTAGCGGTGAGTGCGGTGAAC
ACCAATGGTGGGAAGATAGGGCAAGGTGGAGTAGGGCTAGCTGCGAGAAC
CTCCATCACACGTGCTACACGCCCACCGTAGTTTATGAGTGACGCCTCCT
GCGACAAAGCAAAACGAGCAATCGAGCACGTGCGCGTGAACGGGAGATCA
CAGTTGCTACGCACAACGTCCGGACGATGGCGGTGGATGGGCCGCACAGA
GCTGAACGGGTGCTAGATGTTTTGAATGTGTACGATCGACTGGGGTGCGA
CGTTATCGGTTTGCAGGAGACCCGCCGTAGTGTACATCCAGCCTTCACTC
AGGCTGGCTACTCGGTGTACTGTAGCGGTGAGTGCGGTGAACACCAATGG
TGGGAAGATAGGGCAAGGTGGAGTAGGGCTAGCTGCGAGAACCTCCATCA
CACGTGCTACACGCCCACCGTAGTTTATGAGTGA
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