mRNA_H-elongata_contig72708.14943.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72708.14943.1
Unique NamemRNA_H-elongata_contig72708.14943.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: D8LPY7_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY7_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.590e-32
Identity = 67/104 (64.42%), Postives = 74/104 (71.15%), Query Frame = 1
Query:    1 RDGRVLVAYGGSK----------VNTGHKRQXXXXXXXXXDDEEPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 282
            RDGRVL  +GG +          V     R          D+EEP VKFLMLNP+VHFDEIVQKARA++LVGGTMQPTGDLVRQLF SVEPSRV+VFSCGHVIP
Sbjct:  714 RDGRVLATFGGKEGDGRSSSRGSVGGXXXRGATAGQKTTQDEEEPSVKFLMLNPAVHFDEIVQKARALVLVGGTMQPTGDLVRQLFSSVEPSRVEVFSCGHVIP 817          
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A4D9CWW8_9STRA (Helicase ATP-binding domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWW8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.400e-18
Identity = 47/94 (50.00%), Postives = 59/94 (62.77%), Query Frame = 1
Query:    1 RDGRVLVAYGGSKVNTGHKRQXXXXXXXXXDDEEPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 282
            RDGR+++        TGH  Q               +KF+MLN +VHF EIV +AR+V+LVGGTMQP   +V QLFP +  SR+DVFSCGHVIP
Sbjct:  581 RDGRIVL-------ETGHGPQKGRRQMAAG------IKFIMLNAAVHFREIVSEARSVVLVGGTMQPVAPIVAQLFPDLPISRLDVFSCGHVIP 661          
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A5D6Y0V7_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0V7_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.470e-18
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  100 EPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 282
            E  +KF+ +NP+VHF+EIV KAR+VIL GGTMQP   ++ QLFP V  +R+D+FSCGHVIP
Sbjct:  600 EGAIKFIQMNPAVHFEEIVAKARSVILAGGTMQPVAQVIDQLFPFVPRARIDLFSCGHVIP 660          
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A484DR37_BRELC (Helicase ATP-binding domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DR37_BRELC)

HSP 1 Score: 85.9 bits (211), Expect = 1.550e-17
Identity = 39/91 (42.86%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   10 RVLVAYGGSKVNTGHKRQXXXXXXXXXDDEEPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 282
            R++ A+  +  NTG   +            E  ++F++LNP +HF EIV KAR++IL GGTMQP   ++ +LF S+   +VD+FSCGHVIP
Sbjct:  526 RIVEAFLKALTNTGGDGRIFVQPHNASKGAEGLIRFILLNPVIHFQEIVAKARSIILAGGTMQPVSQVIDELFSSIPIEKVDLFSCGHVIP 616          
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: K3W6Y0_GLOUD (Helicase ATP-binding domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6Y0_GLOUD)

HSP 1 Score: 85.9 bits (211), Expect = 1.550e-17
Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  100 EPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 282
            E  +KF+++NP++HF+EIV+KAR+VIL GGTMQP   ++ QLF  +   R+D+FSCGHVIP
Sbjct:  607 EGAIKFILMNPAIHFEEIVEKARSVILAGGTMQPVSQVIDQLFSKIPRDRIDLFSCGHVIP 667          
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A662X2D8_9STRA (Helicase ATP-binding domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X2D8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.120e-17
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1
Query:  109 VKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 282
            +KF++LNP++HF E+V+KAR+VIL GGTMQP   ++ QLF SV    VD+FSCGHVIP
Sbjct:  600 IKFILLNPAIHFQEVVEKARSVILAGGTMQPVSQVIDQLFASVPREHVDLFSCGHVIP 657          
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A397THS0_9GLOM (ATP-dependent DNA helicase CHL1 n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397THS0_9GLOM)

HSP 1 Score: 85.1 bits (209), Expect = 2.890e-17
Identity = 42/93 (45.16%), Postives = 58/93 (62.37%), Query Frame = 1
Query:    4 DGRVLVAYGGSKVNTGHKRQXXXXXXXXXDDEEPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 282
            DGRV++ +    V+   KR+             P+ K+L+LNPS  F +IV+ AR+VIL GGTM+PT DL+ QLFP +   R+  FSCGH+IP
Sbjct:  554 DGRVILGFQQIAVSVEGKREVTTTNYI------PYFKYLLLNPSNQFKDIVEDARSVILAGGTMEPTDDLIEQLFPYLPSQRLSKFSCGHIIP 640          
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A015KHZ2_RHIIW (ATP-dependent DNA helicase CHL1 n=11 Tax=Rhizophagus TaxID=1129544 RepID=A0A015KHZ2_RHIIW)

HSP 1 Score: 84.3 bits (207), Expect = 5.380e-17
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 1
Query:    4 DGRVLVAYGGSKVNTGHKRQXXXXXXXXXDDEEPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 282
            DGRV++ +    V+   KR              P +K+L+LNPS  F +IV+ AR+VIL GGTM+PT DL+ QL P + P R+  FSCGH+IP
Sbjct:  533 DGRVILGFQQISVSVEGKRGGTTTKYV------PIIKYLLLNPSNQFKDIVEDARSVILAGGTMEPTDDLIGQLIPYLPPQRLSKFSCGHIIP 619          
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A329SYA8_9STRA (Putative ATP-dependent DNA helicase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SYA8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 7.340e-17
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  100 EPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 282
            E  ++F++LNP +HF EIV+K+R+VIL GGTMQP   ++ QLF SV    VD+FSCGHVIP
Sbjct:  552 EGLIRFILLNPVIHFQEIVEKSRSVILAGGTMQPVSQVIDQLFSSVPKENVDLFSCGHVIP 612          
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: D0MZY5_PHYIT (ATP-dependent RNA helicase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MZY5_PHYIT)

HSP 1 Score: 83.2 bits (204), Expect = 1.360e-16
Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  100 EPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 282
            E  ++F++LNP++HF EIV K+R+VIL GGTMQP   ++ QLF S+    +D+FSCGHVIP
Sbjct:  515 EGLIRFILLNPAIHFQEIVNKSRSVILAGGTMQPVSQVIDQLFSSIPREHIDLFSCGHVIP 575          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPY7_ECTSI1.590e-3264.42Helicase ATP-binding domain-containing protein n=1... [more]
A0A4D9CWW8_9STRA2.400e-1850.00Helicase ATP-binding domain-containing protein n=2... [more]
A0A5D6Y0V7_9STRA4.470e-1862.30Helicase ATP-binding domain-containing protein n=1... [more]
A0A484DR37_BRELC1.550e-1742.86Helicase ATP-binding domain-containing protein n=1... [more]
K3W6Y0_GLOUD1.550e-1757.38Helicase ATP-binding domain-containing protein n=1... [more]
A0A662X2D8_9STRA2.120e-1762.07Helicase ATP-binding domain-containing protein n=2... [more]
A0A397THS0_9GLOM2.890e-1745.16ATP-dependent DNA helicase CHL1 n=1 Tax=Glomus cer... [more]
A0A015KHZ2_RHIIW5.380e-1745.16ATP-dependent DNA helicase CHL1 n=11 Tax=Rhizophag... [more]
A0A329SYA8_9STRA7.340e-1759.02Putative ATP-dependent DNA helicase n=2 Tax=Phytop... [more]
D0MZY5_PHYIT1.360e-1655.74ATP-dependent RNA helicase, putative n=2 Tax=Phyto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72708contigH-elongata_contig72708:1077..2048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue3.9e-28
Seed eggNOG ortholog2880.D8LPY7
Preferred nameCHL1
KEGG koko:K11273
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0033554,GO:0034085,GO:0034641,GO:0034645,GO:0035861,GO:0036297,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045005,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0090734,GO:0098813,GO:0140014,GO:0140097,GO:1901360,GO:1901576,GO:1903047
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1133@2759
EC3.6.4.13
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size283
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931129.0135713-CDS-H-elongata_contig72708:1076..12381622931129.0135713-CDS-H-elongata_contig72708:1076..1238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72708 1077..1238 +
1691679709.9327395-CDS-H-elongata_contig72708:1076..12381691679709.9327395-CDS-H-elongata_contig72708:1076..1238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72708 1077..1238 +
1622931129.0289156-CDS-H-elongata_contig72708:1927..20471622931129.0289156-CDS-H-elongata_contig72708:1927..2047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72708 1928..2047 +
1691679709.9491456-CDS-H-elongata_contig72708:1927..20471691679709.9491456-CDS-H-elongata_contig72708:1927..2047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72708 1928..2047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72708.14943.1prot_H-elongata_contig72708.14943.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72708 1077..2047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72708.14943.1

>prot_H-elongata_contig72708.14943.1 ID=prot_H-elongata_contig72708.14943.1|Name=mRNA_H-elongata_contig72708.14943.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
RDGRVLVAYGGSKVNTGHKRQQQQQRQQQLDDEEPFVKFLMLNPSVHFDE
IVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP
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mRNA from alignment at H-elongata_contig72708:1077..2048+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72708.14943.1 ID=mRNA_H-elongata_contig72708.14943.1|Name=mRNA_H-elongata_contig72708.14943.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=972bp|location=Sequence derived from alignment at H-elongata_contig72708:1077..2048+ (Himanthalia elongata Himel1 dioecious)
AGGGATGGGCGAGTTCTGGTGGCCTACGGAGGAAGTAAGGTGAACACGGG ACACAAGAGACAACAACAACAGCAGCGGCAGCAACAGCTGGACGACGAAG AGCCCTTCGTCAAGTTTCTCATGCTCAACCCCTCCGTGCACTTTGACGAG ATCGTTCAAAAGGTGCAGGACGAGGGGGAAGGGGGGAAGGGTATATTGCG ATGCGCGCAGCGGTTTGCATTTAAGGCCCCTCCATCACCTCCCCGCCCTC ATCCGTACGCGTGGTCAATGGTGTGACATCTAAGGCTTAGAAAACTGGAG TATGACCTCCCCCCCAACCTCCCTGATTAGTAGATGACTCGCCTCGCGCA TCGGCATAGGTTGGAATCCGTCCCACAGATCCTCGAGATGTTTGGTTCGC GGCGTCGCCTTTGGCCGTCGTGTGTTGCATTCTCGCGATCGTAACTTTCA ACAGTCTCGGAATCGTTTGGCAAGCCAGAGGCCACAGGCAGTTGTCCCTG TCGCGGGACAACCGCCTTCTCCGACACAGCCCGAAATAAAGTACGAAGGA GGAAAGACGGCGCCGGCCGATTATTCGACTTCCTCCCGGGCTTTTTTCTC CCTCCGCGCGTGGCCGAAGTTGCTTTTCTTCTATCGGCGATGGCTCCGGC CTCGTTGCGTGTTTTCCGCCGAGCTACCCTGCTGGAATATTCGGGGACCG CCGAATCATTACTCAGTTAGTCTTGGATTGCTTGTGTGTAGATGTATTTG CGGGACTTAAAAAAAAAAGAATAGAGAAGGGTGTACGTATCTGCCTCCCC TTTGACCGCATCCTTGCCCTGCGCCCGCGTCCGTGAACGCACTCGCGGCA GGCTAGGGCGGTGATCCTCGTCGGGGGCACCATGCAGCCTACGGGGGACC TGGTGCGCCAGCTCTTCCCCTCCGTCGAGCCTTCCCGTGTCGACGTCTTC AGCTGCGGACACGTGATTCCCA
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Coding sequence (CDS) from alignment at H-elongata_contig72708:1077..2048+

>mRNA_H-elongata_contig72708.14943.1 ID=mRNA_H-elongata_contig72708.14943.1|Name=mRNA_H-elongata_contig72708.14943.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig72708:1077..2048+ (Himanthalia elongata Himel1 dioecious)
AGGGATGGGCGAGTTCTGGTGGCCTACGGAGGAAGTAAGGTGAACACGGG
ACACAAGAGACAACAACAACAGCAGCGGCAGCAACAGCTGGACGACGAAG
AGCCCTTCGTCAAGTTTCTCATGCTCAACCCCTCCGTGCACTTTGACGAG
ATCGTTCAAAAGAGGGATGGGCGAGTTCTGGTGGCCTACGGAGGAAGTAA
GGTGAACACGGGACACAAGAGACAACAACAACAGCAGCGGCAGCAACAGC
TGGACGACGAAGAGCCCTTCGTCAAGTTTCTCATGCTCAACCCCTCCGTG
CACTTTGACGAGATCGTTCAAAAGGCTAGGGCGGTGATCCTCGTCGGGGG
CACCATGCAGCCTACGGGGGACCTGGTGCGCCAGCTCTTCCCCTCCGTCG
AGCCTTCCCGTGTCGACGTCTTCAGCTGCGGACACGTGATTCCCGCTAGG
GCGGTGATCCTCGTCGGGGGCACCATGCAGCCTACGGGGGACCTGGTGCG
CCAGCTCTTCCCCTCCGTCGAGCCTTCCCGTGTCGACGTCTTCAGCTGCG
GACACGTGATTCCC
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