mRNA_H-elongata_contig72647.14933.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72647.14933.1
Unique NamemRNA_H-elongata_contig72647.14933.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72647.14933.1 vs. uniprot
Match: A0A835Z1L4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1L4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 9.380e-15
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    1 SELTSHCFGFPTRGFDPGNCVEAVNNGHTPYLPMVAGDGAIDFTLHDLRGEAWSLSETLERTDAPVVMIWGMFT 222
            SELT  C+GFP   F+  NC++    G +P++ + AG  AIDFTL+DL G AW+LSE L     PV +IWGM T
Sbjct:    9 SELTDSCYGFPDDNFNGTNCIKCTY-GTSPHIVLDAGAAAIDFTLYDLDGAAWTLSEHL--ASQPVCLIWGMHT 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72647.14933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z1L4_9STRA9.380e-1550.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72647contigH-elongata_contig72647:1321..1542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-20_004760.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_002700.1
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931128.1834455-CDS-H-elongata_contig72647:1320..15421622931128.1834455-CDS-H-elongata_contig72647:1320..1542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72647 1321..1542 +
1691679709.4706573-CDS-H-elongata_contig72647:1320..15421691679709.4706573-CDS-H-elongata_contig72647:1320..1542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72647 1321..1542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72647.14933.1prot_H-elongata_contig72647.14933.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72647 1321..1542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72647.14933.1

>prot_H-elongata_contig72647.14933.1 ID=prot_H-elongata_contig72647.14933.1|Name=mRNA_H-elongata_contig72647.14933.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
SELTSHCFGFPTRGFDPGNCVEAVNNGHTPYLPMVAGDGAIDFTLHDLRG
EAWSLSETLERTDAPVVMIWGMFT
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mRNA from alignment at H-elongata_contig72647:1321..1542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72647.14933.1 ID=mRNA_H-elongata_contig72647.14933.1|Name=mRNA_H-elongata_contig72647.14933.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig72647:1321..1542+ (Himanthalia elongata Himel1 dioecious)
TCTGAGCTGACGTCCCACTGCTTCGGTTTCCCGACGAGGGGCTTCGACCC
GGGGAACTGCGTCGAGGCAGTGAACAACGGGCACACGCCGTACCTGCCGA
TGGTGGCGGGTGATGGCGCCATCGACTTCACCCTGCACGATCTCCGAGGC
GAGGCCTGGAGCCTCTCGGAGACGCTCGAACGCACCGATGCTCCCGTGGT
GATGATCTGGGGGATGTTCACC
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Coding sequence (CDS) from alignment at H-elongata_contig72647:1321..1542+

>mRNA_H-elongata_contig72647.14933.1 ID=mRNA_H-elongata_contig72647.14933.1|Name=mRNA_H-elongata_contig72647.14933.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig72647:1321..1542+ (Himanthalia elongata Himel1 dioecious)
TCTGAGCTGACGTCCCACTGCTTCGGTTTCCCGACGAGGGGCTTCGACCC
GGGGAACTGCGTCGAGGCAGTGAACAACGGGCACACGCCGTACCTGCCGA
TGGTGGCGGGTGATGGCGCCATCGACTTCACCCTGCACGATCTCCGAGGC
GAGGCCTGGAGCCTCTCGGAGACGCTCGAACGCACCGATGCTCCCGTGGT
GATGATCTGGGGGATGTTCACCTCTGAGCTGACGTCCCACTGCTTCGGTT
TCCCGACGAGGGGCTTCGACCCGGGGAACTGCGTCGAGGCAGTGAACAAC
GGGCACACGCCGTACCTGCCGATGGTGGCGGGTGATGGCGCCATCGACTT
CACCCTGCACGATCTCCGAGGCGAGGCCTGGAGCCTCTCGGAGACGCTCG
AACGCACCGATGCTCCCGTGGTGATGATCTGGGGGATGTTCACC
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