mRNA_H-elongata_contig72442.14912.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72442.14912.1
Unique NamemRNA_H-elongata_contig72442.14912.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig72442.14912.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 2.290e-38
Identity = 65/105 (61.90%), Postives = 82/105 (78.10%), Query Frame = 1 
Query:    4 GLQGLTAQSTMETELVAASLTMKEAMFCSNMILELGFDESFRSVPLYIDNMSALHVAGNRTSSPRAKHIALRYFFVQDLVEGGRISIYYVKTEDQLADLGTKHLS 318
            GLQGLTA STME ELVA++L MKEA+FCSNM+ ELGF + F  +P+Y DN + LH  GNR+ S R KHIALR+FF+++LV  G+ISI+Y  TED LA +GTKH +
Sbjct:   92 GLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFN 196
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BLAST of mRNA_H-elongata_contig72442.14912.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 3.500e-37
Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 1 
Query:    4 GLQGLTAQSTMETELVAASLTMKEAMFCSNMILELGFDESFRSVPLYIDNMSALHVAGNRTSSPRAKHIALRYFFVQDLVEGGRISIYYVKTEDQLADLGTKHLS 318
            GLQGLTA STME ELVA++L MKEA+FCSNM+ ELGF + F  +P+Y DN + LH  GNR+ S R KHIALR+FF+++LV  G+ISI+Y  TED LAD+GTKH +
Sbjct:  317 GLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFN 421
[Close]
BLAST of mRNA_H-elongata_contig72442.14912.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 3.610e-37
Identity = 67/105 (63.81%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:    4 GLQGLTAQSTMETELVAASLTMKEAMFCSNMILELGFDESFRSVPLYIDNMSALHVAGNRTSSPRAKHIALRYFFVQDLVEGGRISIYYVKTEDQLADLGTKHLS 318
            GLQGLTA STME ELVA++L MKEA+FCSNM+ ELGF + F  +P+Y DN + LH  GNR+ S R KHIALR+FF+++LV  G+ISI+YV+TED LAD+GTKH +
Sbjct:  877 GLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFN 981
[Close]
BLAST of mRNA_H-elongata_contig72442.14912.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.230e-36
Identity = 66/105 (62.86%), Postives = 82/105 (78.10%), Query Frame = 1 
Query:    4 GLQGLTAQSTMETELVAASLTMKEAMFCSNMILELGFDESFRSVPLYIDNMSALHVAGNRTSSPRAKHIALRYFFVQDLVEGGRISIYYVKTEDQLADLGTKHLS 318
            GLQ LTAQSTME ELVAA+L MKEA+FCSN++ ELGF + F  VPLY DN + LH  GNR+ S R KHIALR+FF++DLV  G+I I++V T+   AD+GTKHL+
Sbjct:  235 GLQSLTAQSTMEAELVAAALAMKEAVFCSNILTELGFGKEFAQVPLYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKIFIHFVPTDSNPADIGTKHLN 339
[Close]
BLAST of mRNA_H-elongata_contig72442.14912.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 7.300e-36
Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 1 
Query:    4 GLQGLTAQSTMETELVAASLTMKEAMFCSNMILELGFDESFRSVPLYIDNMSALHVAGNRTSSPRAKHIALRYFFVQDLVEGGRISIYYVKTEDQLADLGTKHLS 318
            GLQGLTA STME ELVA++L MKEA+FCSNM+ ELG  + F  +P+Y DN + LH  GNR+ S R KHIALR+FF+++LV  G+ISI+YV TED LAD+GTKH +
Sbjct:  538 GLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFN 642
[Close]
BLAST of mRNA_H-elongata_contig72442.14912.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 2.790e-35
Identity = 66/105 (62.86%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:    4 GLQGLTAQSTMETELVAASLTMKEAMFCSNMILELGFDESFRSVPLYIDNMSALHVAGNRTSSPRAKHIALRYFFVQDLVEGGRISIYYVKTEDQLADLGTKHLS 318
            GLQ LTA ST+E ELVAA+L MKE +FC+NM+ ELGF   FRS PLYI N + LHV GN+T S R KH+ALR+F+++++V+ GRISI+Y+ TED LAD+GTKHL+
Sbjct:  571 GLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLN 674
[Close]
BLAST of mRNA_H-elongata_contig72442.14912.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.340e-34
Identity = 65/105 (61.90%), Postives = 82/105 (78.10%), Query Frame = 1 
Query:    4 GLQGLTAQSTMETELVAASLTMKEAMFCSNMILELGFDESFRSVPLYIDNMSALHVAGNRTSSPRAKHIALRYFFVQDLVEGGRISIYYVKTEDQLADLGTKHLS 318
            GLQGLTA STME ELVA++L M EA+F SNM+ ELGF + F  +P+Y DN + LH  GNR+ S R KHIALR+FF+++LV  G+ISI+YV TED LAD+GTKH +
Sbjct: 1546 GLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFN 1650
[Close]
BLAST of mRNA_H-elongata_contig72442.14912.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 6.270e-34
Identity = 60/105 (57.14%), Postives = 82/105 (78.10%), Query Frame = 1 
Query:    4 GLQGLTAQSTMETELVAASLTMKEAMFCSNMILELGFDESFRSVPLYIDNMSALHVAGNRTSSPRAKHIALRYFFVQDLVEGGRISIYYVKTEDQLADLGTKHLS 318
            G+QG TA STME EL+A++L MKEA+FCSN++ ELG  + F  VPLY DN + LH  GNR+ S R KHIALR+F++++L+  GRISI+Y+ T+  +AD+GTKHL+
Sbjct: 1047 GIQGPTAMSTMEAELIASALAMKEAVFCSNILTELGLGKEFAQVPLYCDNTATLHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTKHLN 1151
[Close]
BLAST of mRNA_H-elongata_contig72442.14912.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.170e-33
Identity = 63/106 (59.43%), Postives = 83/106 (78.30%), Query Frame = 1 
Query:    4 GLQGLTAQSTMETELVAASLTMKEAMFCSNMILELGFDESFRSVPLYIDNMSALHVAGNRTS-SPRAKHIALRYFFVQDLVEGGRISIYYVKTEDQLADLGTKHLS 318
            G+QG TA STME EL+A++L MKEA+FCSN++ ELGF + F  VPLY DN + LH  GNR+S S R KHIALR+F++++LV  GRISI+Y+ T+   AD+GTKHL+
Sbjct:  858 GIQGPTAMSTMEAELIASALAMKEAVFCSNILTELGFGKEFAQVPLYCDNTATLHALGNRSSFSSRTKHIALRFFYIRELVSEGRISIHYIPTDSNPADIGTKHLN 963
[Close]
BLAST of mRNA_H-elongata_contig72442.14912.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.030e-32
Identity = 62/105 (59.05%), Postives = 81/105 (77.14%), Query Frame = 1 
Query:    4 GLQGLTAQSTMETELVAASLTMKEAMFCSNMILELGFDESFRSVPLYIDNMSALHVAGNRTSSPRAKHIALRYFFVQDLVEGGRISIYYVKTEDQLADLGTKHLS 318
            G+QG  A STME EL+A++L MKEA+FCSNM+ ELGF + F  VPLY DN + LH  GNR+ S R  HIALR+F++++LV  GRISI+YV T+  LAD+GTK+L+
Sbjct: 1075 GIQGPAAISTMEAELIASALAMKEAVFCSNMLTELGFGKEFAQVPLYCDNTATLHALGNRSFSSRENHIALRFFYIRELVLEGRISIHYVPTDSNLADIGTKYLN 1179
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72442.14912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMK0_9PHAE2.290e-3861.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5U2_9PHAE3.500e-3762.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE3.610e-3763.81Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J9N2_9PHAE1.230e-3662.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME8_9PHAE7.300e-3662.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBU1_9PHAE2.790e-3562.86CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJH6_9PHAE1.340e-3461.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K129_9PHAE6.270e-3457.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC00_9PHAE2.170e-3359.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE1.030e-3259.05Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72442contigH-elongata_contig72442:2087..2404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score73.6
Seed ortholog evalue6.4e-11
Seed eggNOG ortholog698440.XP_007294870.1
EggNOG free text desc.retrotransposon
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931125.9642797-CDS-H-elongata_contig72442:2086..24041622931125.9642797-CDS-H-elongata_contig72442:2086..2404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72442 2087..2404 +
1691679708.6573393-CDS-H-elongata_contig72442:2086..24041691679708.6573393-CDS-H-elongata_contig72442:2086..2404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72442 2087..2404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72442.14912.1prot_H-elongata_contig72442.14912.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72442 2087..2404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72442.14912.1

>prot_H-elongata_contig72442.14912.1 ID=prot_H-elongata_contig72442.14912.1|Name=mRNA_H-elongata_contig72442.14912.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MGLQGLTAQSTMETELVAASLTMKEAMFCSNMILELGFDESFRSVPLYID
NMSALHVAGNRTSSPRAKHIALRYFFVQDLVEGGRISIYYVKTEDQLADL
GTKHLS
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mRNA from alignment at H-elongata_contig72442:2087..2404+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72442.14912.1 ID=mRNA_H-elongata_contig72442.14912.1|Name=mRNA_H-elongata_contig72442.14912.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig72442:2087..2404+ (Himanthalia elongata Himel1 dioecious)
ATGGGACTGCAGGGGCTGACCGCACAGTCCACGATGGAGACAGAGCTCGT
GGCGGCATCTCTGACAATGAAGGAGGCGATGTTCTGCTCCAACATGATTC
TGGAACTTGGCTTCGATGAGAGCTTCCGCAGCGTGCCGCTGTACATCGAC
AACATGTCGGCACTGCATGTCGCCGGCAATCGCACCAGCAGCCCTCGTGC
AAAGCACATCGCGCTGAGGTATTTTTTCGTGCAAGACCTGGTAGAGGGGG
GCAGGATCAGCATCTACTACGTCAAGACCGAGGATCAGCTGGCGGACTTG
GGCACCAAGCACCTTAGC
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Coding sequence (CDS) from alignment at H-elongata_contig72442:2087..2404+

>mRNA_H-elongata_contig72442.14912.1 ID=mRNA_H-elongata_contig72442.14912.1|Name=mRNA_H-elongata_contig72442.14912.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig72442:2087..2404+ (Himanthalia elongata Himel1 dioecious)
ATGGGACTGCAGGGGCTGACCGCACAGTCCACGATGGAGACAGAGCTCGT
GGCGGCATCTCTGACAATGAAGGAGGCGATGTTCTGCTCCAACATGATTC
TGGAACTTGGCTTCGATGAGAGCTTCCGCAGCGTGCCGCTGTACATCGAC
AACATGTCGGCACTGCATGTCGCCGGCAATCGCACCAGCAGCCCTCGTGC
AAAGCACATCGCGCTGAGGTATTTTTTCGTGCAAGACCTGGTAGAGGGGG
GCAGGATCAGCATCTACTACGTCAAGACCGAGGATCAGCTGGCGGACTTG
GGCACCAAGCACCTTAGCATGGGACTGCAGGGGCTGACCGCACAGTCCAC
GATGGAGACAGAGCTCGTGGCGGCATCTCTGACAATGAAGGAGGCGATGT
TCTGCTCCAACATGATTCTGGAACTTGGCTTCGATGAGAGCTTCCGCAGC
GTGCCGCTGTACATCGACAACATGTCGGCACTGCATGTCGCCGGCAATCG
CACCAGCAGCCCTCGTGCAAAGCACATCGCGCTGAGGTATTTTTTCGTGC
AAGACCTGGTAGAGGGGGGCAGGATCAGCATCTACTACGTCAAGACCGAG
GATCAGCTGGCGGACTTGGGCACCAAGCACCTTAGC
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