mRNA_H-elongata_contig72181.14888.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72181.14888.1
Unique NamemRNA_H-elongata_contig72181.14888.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72181.14888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72181contigH-elongata_contig72181:764..2098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_009920.1
Exons3
Model size827
Cds size825
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72181.14888.1prot_H-elongata_contig72181.14888.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72181 764..2098 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931122.6693373-CDS-H-elongata_contig72181:763..14561622931122.6693373-CDS-H-elongata_contig72181:763..1456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72181 764..1456 -
1691679707.3517635-CDS-H-elongata_contig72181:763..14561691679707.3517635-CDS-H-elongata_contig72181:763..1456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72181 764..1456 -
1622931122.7805805-CDS-H-elongata_contig72181:1956..20231622931122.7805805-CDS-H-elongata_contig72181:1956..2023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72181 1957..2023 -
1691679707.3591623-CDS-H-elongata_contig72181:1956..20231691679707.3591623-CDS-H-elongata_contig72181:1956..2023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72181 1957..2023 -
1622931122.8505366-CDS-H-elongata_contig72181:2033..20981622931122.8505366-CDS-H-elongata_contig72181:2033..2098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72181 2034..2098 -
1691679707.3688927-CDS-H-elongata_contig72181:2033..20981691679707.3688927-CDS-H-elongata_contig72181:2033..2098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72181 2034..2098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72181.14888.1

>prot_H-elongata_contig72181.14888.1 ID=prot_H-elongata_contig72181.14888.1|Name=mRNA_H-elongata_contig72181.14888.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=275bp
YTRFWKRQFRRGRFPRRRWRRWGRKNWRKKRGTGDSYATVEEQHTYGPRT
TLVGDGGRSGGGEGLAGTNSGGGTGRGRGRNGSGGISKGGGVRRRYRGGR
GRGGGGVSGDGSEGGNGGRDRGGVNGDGTKGCDGCGYGDVSGDGNGGAGP
DVADQQAIQDFQAWVSTPGAPNKAVEAQKNFDADGFMPRYIRQVHHFLRE
RDGRAPAPHAVGRTTGSIESSAFSRKGAGGGSCLSAHARPWISPRSGIGV
GDGMRGFAVKDRKAPLEQVCVFYY*
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mRNA from alignment at H-elongata_contig72181:764..2098-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72181.14888.1 ID=mRNA_H-elongata_contig72181.14888.1|Name=mRNA_H-elongata_contig72181.14888.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1335bp|location=Sequence derived from alignment at H-elongata_contig72181:764..2098- (Himanthalia elongata Himel1 dioecious)
TACACCAGGTTTTGGAAGAGACAATTCCGGCGTGGAAGGTTCCCGAGGAG
GCGGTGGCGGCGGTGGCGGTGGAAGGGGCCGAAAAAATTGGCGAAAGAAG
AGGGGTACAGGAGACAGCTATGCCACAGTGGAGGAGCAGCATGTGAGATC
CAGAGCTCGTTCCCAGATACCATTGTCATACAATCGTGGGAGCGGACAAT
CAACTTAAAGATATTTGAAAATTGGTTGCAGGCGATCTACGCTATAAATC
GCGAGGGTGAGCAAGCATTCATCGCGGGCGTGCCAAATTATAGTACCTGT
TGCCCATTCGTTATAGTCCCAAAAAACGCGCGTTCTTGACATCATGCCGT
TCCCTCCCGAAATTCTACAACAGCACGCACTACCTATTTGTGCCCTAAAT
GCCTTTACTCGTACGACTCATTAGTACGGAGAAAACTTGTTGCTCAAAAG
ACAATACTGATTCAAAAATAATTTCATAATTTCCCTTCTATTTTTTTTCT
TCCCGACTGGACTATTTCCCCCCCCCCCCCCCCCCTTCTCCCCTTTCTGA
GGTTTGTGATGCTTGATCCCTGCAATTTGATCGAACTGTTTGCGTCGCTC
CATACCCCAACAAACTTCATCTTCGTAATTTGTCGTGGACAGACTTATGG
CCCCAGAACTACCCTTGTCGGGGATGGCGGAAGGAGCGGCGGGGGTGAAG
GCTTAGCTGGCACCAACTCTGGTGGTGGCACCGGAAGAGGACGCGGCCGT
AATGGCAGCGGAGGTATCAGCAAAGGAGGTGGGGTCCGCAGGCGGTATCG
TGGCGGTCGCGGTCGGGGTGGTGGTGGCGTCAGCGGGGACGGCAGCGAAG
GCGGTAACGGCGGTCGCGATCGCGGTGGTGTCAACGGCGACGGCACCAAA
GGCTGCGACGGTTGCGGTTACGGTGACGTCAGTGGCGACGGCAACGGTGG
CGCGGGTCCGGACGTCGCCGACCAGCAAGCGATTCAGGACTTTCAGGCGT
GGGTCTCCACCCCAGGCGCCCCCAACAAGGCGGTGGAGGCGCAAAAGAAC
TTCGATGCAGACGGGTTCATGCCGCGGTACATTCGCCAAGTGCACCATTT
CCTCAGAGAGCGAGATGGTCGCGCTCCCGCTCCGCATGCGGTGGGGAGGA
CTACCGGAAGCATCGAGAGCAGTGCATTCTCGAGAAAAGGGGCTGGCGGT
GGTAGTTGCCTTTCTGCCCATGCGCGCCCGTGGATCAGTCCACGATCTGG
CATCGGAGTAGGAGACGGCATGCGGGGCTTCGCGGTCAAGGACAGGAAGG
CACCTTTGGAGCAGGTGTGTGTCTTCTATTACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig72181:764..2098-

>mRNA_H-elongata_contig72181.14888.1 ID=mRNA_H-elongata_contig72181.14888.1|Name=mRNA_H-elongata_contig72181.14888.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1650bp|location=Sequence derived from alignment at H-elongata_contig72181:764..2098- (Himanthalia elongata Himel1 dioecious)
TACACCAGGTTTTGGAAGAGACAATTCCGGCGTGGAAGGTTCCCGAGGAG
GCGGTGGCGGCGGTGTACACCAGGTTTTGGAAGAGACAATTCCGGCGTGG
AAGGTTCCCGAGGAGGCGGTGGCGGCGGTGGGGCCGAAAAAATTGGCGAA
AGAAGAGGGGTACAGGAGACAGCTATGCCACAGTGGAGGAGCAGCATGGG
CCGAAAAAATTGGCGAAAGAAGAGGGGTACAGGAGACAGCTATGCCACAG
TGGAGGAGCAGCATACTTATGGCCCCAGAACTACCCTTGTCGGGGATGGC
GGAAGGAGCGGCGGGGGTGAAGGCTTAGCTGGCACCAACTCTGGTGGTGG
CACCGGAAGAGGACGCGGCCGTAATGGCAGCGGAGGTATCAGCAAAGGAG
GTGGGGTCCGCAGGCGGTATCGTGGCGGTCGCGGTCGGGGTGGTGGTGGC
GTCAGCGGGGACGGCAGCGAAGGCGGTAACGGCGGTCGCGATCGCGGTGG
TGTCAACGGCGACGGCACCAAAGGCTGCGACGGTTGCGGTTACGGTGACG
TCAGTGGCGACGGCAACGGTGGCGCGGGTCCGGACGTCGCCGACCAGCAA
GCGATTCAGGACTTTCAGGCGTGGGTCTCCACCCCAGGCGCCCCCAACAA
GGCGGTGGAGGCGCAAAAGAACTTCGATGCAGACGGGTTCATGCCGCGGT
ACATTCGCCAAGTGCACCATTTCCTCAGAGAGCGAGATGGTCGCGCTCCC
GCTCCGCATGCGGTGGGGAGGACTACCGGAAGCATCGAGAGCAGTGCATT
CTCGAGAAAAGGGGCTGGCGGTGGTAGTTGCCTTTCTGCCCATGCGCGCC
CGTGGATCAGTCCACGATCTGGCATCGGAGTAGGAGACGGCATGCGGGGC
TTCGCGGTCAAGGACAGGAAGGCACCTTTGGAGCAGGTGTGTGTCTTCTA
TTACTGAACTTATGGCCCCAGAACTACCCTTGTCGGGGATGGCGGAAGGA
GCGGCGGGGGTGAAGGCTTAGCTGGCACCAACTCTGGTGGTGGCACCGGA
AGAGGACGCGGCCGTAATGGCAGCGGAGGTATCAGCAAAGGAGGTGGGGT
CCGCAGGCGGTATCGTGGCGGTCGCGGTCGGGGTGGTGGTGGCGTCAGCG
GGGACGGCAGCGAAGGCGGTAACGGCGGTCGCGATCGCGGTGGTGTCAAC
GGCGACGGCACCAAAGGCTGCGACGGTTGCGGTTACGGTGACGTCAGTGG
CGACGGCAACGGTGGCGCGGGTCCGGACGTCGCCGACCAGCAAGCGATTC
AGGACTTTCAGGCGTGGGTCTCCACCCCAGGCGCCCCCAACAAGGCGGTG
GAGGCGCAAAAGAACTTCGATGCAGACGGGTTCATGCCGCGGTACATTCG
CCAAGTGCACCATTTCCTCAGAGAGCGAGATGGTCGCGCTCCCGCTCCGC
ATGCGGTGGGGAGGACTACCGGAAGCATCGAGAGCAGTGCATTCTCGAGA
AAAGGGGCTGGCGGTGGTAGTTGCCTTTCTGCCCATGCGCGCCCGTGGAT
CAGTCCACGATCTGGCATCGGAGTAGGAGACGGCATGCGGGGCTTCGCGG
TCAAGGACAGGAAGGCACCTTTGGAGCAGGTGTGTGTCTTCTATTACTGA
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