mRNA_H-elongata_contig72083.14885.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72083.14885.1
Unique NamemRNA_H-elongata_contig72083.14885.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72083.14885.1 vs. uniprot
Match: A0A6H5JDM2_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM2_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 8.590e-22
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    1 YRKLARREQHVWFGRIDASSRPELAKDLGLQVVPAFVTFRRGERVTVASTNSKKKIEKLVEELLY 195
            YRKLARR++ V FGR+DAS+ PELA+ LGL  VP+FVTFR GE VT  +T+SKK IEKLVEELLY
Sbjct:  193 YRKLARRQEQVLFGRVDASTHPELARQLGLTAVPSFVTFREGEVVTSKATSSKKNIEKLVEELLY 257
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BLAST of mRNA_H-elongata_contig72083.14885.1 vs. uniprot
Match: D8LU97_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU97_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 3.280e-21
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    1 YRKLARREQHVWFGRIDASSRPELAKDLGLQVVPAFVTFRRGERVTVASTNSKKKIEKLVEELLY 195
            YRKLARR++ V FGR+DASS PELA+ LGL  VP+FVTFR GE VT  +T+SKK IEKLVEELLY
Sbjct:  440 YRKLARRQEQVLFGRVDASSHPELARQLGLTAVPSFVTFREGEVVTSKATSSKKNIEKLVEELLY 504
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72083.14885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDM2_9PHAE8.590e-2270.77Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
D8LU97_ECTSI3.280e-2172.31Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72083contigH-elongata_contig72083:2349..2546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue3.7e-17
Seed eggNOG ortholog2880.D8LU97
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG0604@1,KOG1198@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioredoxin domain
Ec32 orthologEc-14_004200.1
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931122.4581065-CDS-H-elongata_contig72083:2348..25461622931122.4581065-CDS-H-elongata_contig72083:2348..2546Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72083 2349..2546 -
1691679707.3050737-CDS-H-elongata_contig72083:2348..25461691679707.3050737-CDS-H-elongata_contig72083:2348..2546Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72083 2349..2546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72083.14885.1prot_H-elongata_contig72083.14885.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72083 2349..2546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72083.14885.1

>prot_H-elongata_contig72083.14885.1 ID=prot_H-elongata_contig72083.14885.1|Name=mRNA_H-elongata_contig72083.14885.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
YRKLARREQHVWFGRIDASSRPELAKDLGLQVVPAFVTFRRGERVTVAST
NSKKKIEKLVEELLY*
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mRNA from alignment at H-elongata_contig72083:2349..2546-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72083.14885.1 ID=mRNA_H-elongata_contig72083.14885.1|Name=mRNA_H-elongata_contig72083.14885.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig72083:2349..2546- (Himanthalia elongata Himel1 dioecious)
TACCGGAAGCTGGCACGTAGAGAACAACATGTTTGGTTTGGGCGCATCGA
CGCGTCTTCTCGCCCAGAACTGGCGAAGGATCTCGGTCTGCAGGTTGTGC
CCGCTTTCGTGACGTTCAGGAGAGGGGAGAGAGTAACGGTGGCGAGTACC
AATAGCAAAAAGAAGATCGAGAAGCTCGTAGAAGAGTTACTTTACTAG
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Coding sequence (CDS) from alignment at H-elongata_contig72083:2349..2546-

>mRNA_H-elongata_contig72083.14885.1 ID=mRNA_H-elongata_contig72083.14885.1|Name=mRNA_H-elongata_contig72083.14885.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig72083:2349..2546- (Himanthalia elongata Himel1 dioecious)
TACCGGAAGCTGGCACGTAGAGAACAACATGTTTGGTTTGGGCGCATCGA
CGCGTCTTCTCGCCCAGAACTGGCGAAGGATCTCGGTCTGCAGGTTGTGC
CCGCTTTCGTGACGTTCAGGAGAGGGGAGAGAGTAACGGTGGCGAGTACC
AATAGCAAAAAGAAGATCGAGAAGCTCGTAGAAGAGTTACTTTACTAGTA
CCGGAAGCTGGCACGTAGAGAACAACATGTTTGGTTTGGGCGCATCGACG
CGTCTTCTCGCCCAGAACTGGCGAAGGATCTCGGTCTGCAGGTTGTGCCC
GCTTTCGTGACGTTCAGGAGAGGGGAGAGAGTAACGGTGGCGAGTACCAA
TAGCAAAAAGAAGATCGAGAAGCTCGTAGAAGAGTTACTTTACTAG
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