mRNA_H-elongata_contig71817.14857.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71817.14857.1
Unique NamemRNA_H-elongata_contig71817.14857.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71817.14857.1 vs. uniprot
Match: C9K4U6_SACJA (Unconventional myosin n=1 Tax=Saccharina japonica TaxID=88149 RepID=C9K4U6_SACJA)

HSP 1 Score: 376 bits (965), Expect = 4.340e-119
Identity = 183/204 (89.71%), Postives = 196/204 (96.08%), Query Frame = 1 
Query:    1 NAETSSGRGVEDMCSLNHLHEPAILYNLRTRFFNLLPYTYTGEICIAINPYQWLDIYGKKLGSRYKEASKRADLPPHVYATSAQAFKGLKTYGINQSILVSGESGAGKTETVKILLNHLADIAGAHANDRTIDKVITSNPLLESFGNAKTLRNDNSSRFGKFTELQLDDRCRLSGSRSNTYLLEKVRVVSHARGERTYHIFYQV 612
            N ETS G GV+DMCSLNHLHEPAILYNLR RF +LLPYTYT EICIAINPYQWL+IYGK+LG RYK+ASKR+DLPPHVYATSAQA+KGL+TY +NQSILVSGESGAGKTETVKILLNHLADIAGAHANDRTI+KVITSNPLLESFGNAKTLRNDNSSRFGKFTELQ+DDRCRLSGS+SNTYLLEKVRVVSHARGERTYHIFYQ+
Sbjct:   86 NVETSEGNGVQDMCSLNHLHEPAILYNLRRRFVSLLPYTYTREICIAINPYQWLNIYGKELGKRYKKASKRSDLPPHVYATSAQAYKGLRTYSVNQSILVSGESGAGKTETVKILLNHLADIAGAHANDRTIEKVITSNPLLESFGNAKTLRNDNSSRFGKFTELQMDDRCRLSGSQSNTYLLEKVRVVSHARGERTYHIFYQL 289
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BLAST of mRNA_H-elongata_contig71817.14857.1 vs. uniprot
Match: A0A6H5LE99_9PHAE (Myosin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LE99_9PHAE)

HSP 1 Score: 374 bits (960), Expect = 2.930e-118
Identity = 181/204 (88.73%), Postives = 197/204 (96.57%), Query Frame = 1 
Query:    1 NAETSSGRGVEDMCSLNHLHEPAILYNLRTRFFNLLPYTYTGEICIAINPYQWLDIYGKKLGSRYKEASKRADLPPHVYATSAQAFKGLKTYGINQSILVSGESGAGKTETVKILLNHLADIAGAHANDRTIDKVITSNPLLESFGNAKTLRNDNSSRFGKFTELQLDDRCRLSGSRSNTYLLEKVRVVSHARGERTYHIFYQV 612
            NAET+ G+GV DMC+LNHLHEPAILYNLR RF +LLPYTYTGEICIAINPYQWLDIYG++LG RYKEASKR+D+ PHVYATSAQAFKGL+TYG+NQSILVSGESGAGKTETVKILLNHLADIAG+HA+DRTI+KVITSNPLLESFGNAKTLRNDNSSRFGKFTELQLD RCRL+GS+SNTYLLEKVRVVSHARGERTYHIFYQ+
Sbjct:   89 NAETADGKGVADMCALNHLHEPAILYNLRRRFMSLLPYTYTGEICIAINPYQWLDIYGRELGQRYKEASKRSDMAPHVYATSAQAFKGLQTYGVNQSILVSGESGAGKTETVKILLNHLADIAGSHADDRTIEKVITSNPLLESFGNAKTLRNDNSSRFGKFTELQLDSRCRLAGSQSNTYLLEKVRVVSHARGERTYHIFYQL 292
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BLAST of mRNA_H-elongata_contig71817.14857.1 vs. uniprot
Match: A0A835YWV8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWV8_9STRA)

HSP 1 Score: 299 bits (765), Expect = 5.270e-95
Identity = 144/192 (75.00%), Postives = 165/192 (85.94%), Query Frame = 1 
Query:   37 MCSLNHLHEPAILYNLRTRFFNLLPYTYTGEICIAINPYQWLDIYGKKLGSRYKEASKRADLPPHVYATSAQAFKGLKTYGINQSILVSGESGAGKTETVKILLNHLADIAGAHANDRTIDKVITSNPLLESFGNAKTLRNDNSSRFGKFTELQLDDRCRLSGSRSNTYLLEKVRVVSHARGERTYHIFYQV 612
            MC+LN+LHEPAIL NLR RFF  +PYTYTGEICIA+NPYQWLDIY +++G++Y  A K++DLPPH YATS  AF+GL+ Y  NQSILVSGESGAGKTETVKILLNHLA IAG    D TIDKVI SNPLLESFGNAKT+RNDNSSRFGKFTELQ ++RC L GS  NTYLLEK RVV+H+RGER+YH+FYQ+
Sbjct:    1 MCALNYLHEPAILANLRQRFFAKMPYTYTGEICIAVNPYQWLDIYNERIGAKYGAALKKSDLPPHPYATSTAAFRGLRMYSKNQSILVSGESGAGKTETVKILLNHLAAIAGGEQGDTTIDKVINSNPLLESFGNAKTVRNDNSSRFGKFTELQFNERCHLVGSNINTYLLEKSRVVTHSRGERSYHVFYQL 192
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BLAST of mRNA_H-elongata_contig71817.14857.1 vs. uniprot
Match: A0A2P4XF43_9STRA (Myosin-like protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XF43_9STRA)

HSP 1 Score: 246 bits (627), Expect = 2.950e-78
Identity = 131/211 (62.09%), Postives = 158/211 (74.88%), Query Frame = 1 
Query:    1 NAETSSGRGVEDMCSLNHLHEPAILYNLRTRFFNLLPYTYTGEICIAINPYQWLDIYGKKLGSRYKEASKRADLPPHVYATSAQAFKGLKTYGINQSILVSGESGAGKTETVKILLNHLADIAGAHANDRT-------IDKVITSNPLLESFGNAKTLRNDNSSRFGKFTELQLDDRCRLSGSRSNTYLLEKVRVVSHARGERTYHIFYQV 612
            NA TS   G  DM SLN+LHEPAIL+NL+ RF   +PYTYTG ICIA+NPY WLDIY K+L  +Y E   R++LPPHVYATSA AF+ ++ +G +QSILVSGESGAGKTET KIL++HLA  AG+H+           I++V+ +NPL+ESFGNAKT RNDNSSRFGKF+ELQ D   +L G+RS TYLLEK RV     GER YHIFYQ+
Sbjct:   67 NALTSED-GTADMVSLNYLHEPAILFNLKHRFLRQIPYTYTGAICIAVNPYSWLDIYTKELQDQYLERD-RSELPPHVYATSAGAFQHMRVFGEDQSILVSGESGAGKTETTKILMSHLAS-AGSHSTSDAQAKEASIIERVLDANPLMESFGNAKTSRNDNSSRFGKFSELQFDTLGQLIGARSRTYLLEKSRVSLQGLGERNYHIFYQL 274
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BLAST of mRNA_H-elongata_contig71817.14857.1 vs. uniprot
Match: A0A6A4ZAR3_9STRA (Myosin motor domain-containing protein (Fragment) n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZAR3_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.210e-76
Identity = 129/203 (63.55%), Postives = 153/203 (75.37%), Query Frame = 1 
Query:    7 ETSSGRGVEDMCSLNHLHEPAILYNLRTRFFNLLPYTYTGEICIAINPYQWL-DIYGKKLGSRYKEASKRADLPPHVYATSAQAFKGLKTYGINQSILVSGESGAGKTETVKILLNHLADIAGAHANDRTIDKVITSNPLLESFGNAKTLRNDNSSRFGKFTELQLDDRCRLSGSRSNTYLLEKVRVVSHARGERTYHIFYQV 612
            E     G+EDM +LN+LHE AILYN++TRF   LPYTYTG+ICIA+NPY+ L D+Y ++   RY     R +LPPHVYATS  +++ +KT G NQSILVSGESGAGKTET KIL+NHLA IAG   ND TI K+I  +PLLE FGNAKT+RNDNSSRFGKFT+LQ D    L G++  TYLLEK RV+SH   ER YHIFYQV
Sbjct:   80 ENVGDEGIEDMITLNYLHEAAILYNVKTRFLKELPYTYTGDICIAVNPYKRLHDLYAEEQHIRYLNFP-REELPPHVYATSVASYENMKTAGRNQSILVSGESGAGKTETTKILMNHLATIAGG-MNDGTIKKIIEVSPLLEYFGNAKTVRNDNSSRFGKFTQLQFDRVGTLVGAKCKTYLLEKTRVISHEHPERNYHIFYQV 280
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BLAST of mRNA_H-elongata_contig71817.14857.1 vs. uniprot
Match: A0A6A4YJX9_9STRA (Myosin motor domain-containing protein (Fragment) n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4YJX9_9STRA)

HSP 1 Score: 241 bits (616), Expect = 3.070e-76
Identity = 124/197 (62.94%), Postives = 149/197 (75.63%), Query Frame = 1 
Query:   25 GVEDMCSLNHLHEPAILYNLRTRFFNLLPYTYTGEICIAINPYQWLDIYGKKLGSRYKEASKRADLPPHVYATSAQAFKGLKTYGINQSILVSGESGAGKTETVKILLNHLADIAGAHANDR-TIDKVITSNPLLESFGNAKTLRNDNSSRFGKFTELQLDDRCRLSGSRSNTYLLEKVRVVSHARGERTYHIFYQV 612
            GVEDMC+LNHLHEPA+L NL+ R    +PYTYTG+ICIA+NPY+WLD+YGK L  +Y     R +L PH +A S+ A+  +   GI QSILVSGESGAGKTETVKI++NHLA I+G   +    ID+V+ SNPLLE+FGNAKT RNDNSSRFGKF +LQ +    L G+R  TYLLEK RVV  A+GER YHIFYQV
Sbjct:   76 GVEDMCTLNHLHEPAVLKNLQLRHAQFVPYTYTGQICIAVNPYKWLDLYGKDLYLQYLNMP-RNELAPHPFALSSGAYIDMNKNGIEQSILVSGESGAGKTETVKIMMNHLASISGGGDHGSLVIDQVLKSNPLLEAFGNAKTKRNDNSSRFGKFAQLQFNPEGLLVGARCETYLLEKSRVVGQAQGERNYHIFYQV 271
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BLAST of mRNA_H-elongata_contig71817.14857.1 vs. uniprot
Match: A0A397DV51_9STRA (Myosin motor domain-containing protein (Fragment) n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DV51_9STRA)

HSP 1 Score: 248 bits (633), Expect = 9.070e-76
Identity = 125/201 (62.19%), Postives = 151/201 (75.12%), Query Frame = 1 
Query:   25 GVEDMCSLNHLHEPAILYNLRTRFFNLLPYTYTGEICIAINPYQWLDIYGKKLGSRYKEASKRADLPPHVYATSAQAFKGLKTYGINQSILVSGESGAGKTETVKILLNHLADIAGAHANDRT-----IDKVITSNPLLESFGNAKTLRNDNSSRFGKFTELQLDDRCRLSGSRSNTYLLEKVRVVSHARGERTYHIFYQV 612
            G EDM +LN+LHE AILYNL+ RF   LPYTYTG ICIA+NPY WLDIY   +  +Y + SK  +LPPHVYA SA+AF  +KT G NQSILVSGESGAGKTET KIL++HLA      A+++      +++V+ SNPL+ESFGNA T RNDNSSRFGKF+ELQ +    L G+R NTYLLEK RV +H +GER YHIFYQ+
Sbjct:   70 GCEDMVNLNYLHEAAILYNLKARFHGGLPYTYTGPICIAVNPYTWLDIYNPTVQDQYLDTSKLTELPPHVYAVSARAFHHMKTTGHNQSILVSGESGAGKTETTKILMSHLATAGDRDAHNKELTLNIVERVLQSNPLMESFGNATTSRNDNSSRFGKFSELQFNADYELVGARCNTYLLEKSRVSTHGKGERNYHIFYQL 270
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BLAST of mRNA_H-elongata_contig71817.14857.1 vs. uniprot
Match: M4BYP7_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BYP7_HYAAE)

HSP 1 Score: 256 bits (654), Expect = 1.560e-75
Identity = 130/203 (64.04%), Postives = 156/203 (76.85%), Query Frame = 1 
Query:    7 ETSSGRGVEDMCSLNHLHEPAILYNLRTRFFNLLPYTYTGEICIAINPYQWL-DIYGKKLGSRYKEASKRADLPPHVYATSAQAFKGLKTYGINQSILVSGESGAGKTETVKILLNHLADIAGAHANDRTIDKVITSNPLLESFGNAKTLRNDNSSRFGKFTELQLDDRCRLSGSRSNTYLLEKVRVVSHARGERTYHIFYQV 612
            E     G+EDM +LN+LHE AILYN++ RF   LPYTYTG+ICIA+NPYQWL ++Y ++  S+Y   S R +LPPHVYATS  ++K +K + +NQSILVSGESGAGKTET K+L+NHLA IAG   ND TI K+I  NPLLESFGNAKT+RNDNSSRFGKFT+LQ D    L G+R  TYLLEK RV+SH   ER YHIFYQ+
Sbjct:   85 ENLGPEGIEDMTALNYLHEAAILYNVKKRFLQKLPYTYTGDICIAVNPYQWLPELYSEQTQSQYLTKS-RDELPPHVYATSMASYKDMKLHAVNQSILVSGESGAGKTETTKVLMNHLASIAGG-LNDYTIKKIIEVNPLLESFGNAKTVRNDNSSRFGKFTQLQFDSDGTLVGARCRTYLLEKTRVISHEIAERNYHIFYQL 285
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BLAST of mRNA_H-elongata_contig71817.14857.1 vs. uniprot
Match: A0A2D4BK75_PYTIN (Myosin motor domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK75_PYTIN)

HSP 1 Score: 255 bits (651), Expect = 4.500e-75
Identity = 129/197 (65.48%), Postives = 155/197 (78.68%), Query Frame = 1 
Query:   25 GVEDMCSLNHLHEPAILYNLRTRFFNLLPYTYTGEICIAINPYQWL-DIYGKKLGSRYKEASKRADLPPHVYATSAQAFKGLKTYGINQSILVSGESGAGKTETVKILLNHLADIAGAHANDRTIDKVITSNPLLESFGNAKTLRNDNSSRFGKFTELQLDDRCRLSGSRSNTYLLEKVRVVSHARGERTYHIFYQV 612
            G++DM +LN+LHEPAILYN++ RF   LPYTYTG+ICIA+NPYQWL ++Y  +L +RY + +K  +LPPHVYATS  A+  +K +  NQSILVSGESGAGKTET KIL+NHLA IAG   ND TI K+I  NPLLESFGNAKT+RNDNSSRFGKFT+LQ DD   L G++  TYLLEK RV+ H   ER YHIFYQ+
Sbjct:   95 GIDDMIALNYLHEPAILYNVKRRFLQQLPYTYTGDICIAVNPYQWLPELYAPELHARYIDHAKD-ELPPHVYATSVAAYNDMKRFDRNQSILVSGESGAGKTETTKILMNHLASIAGG-LNDSTIKKIIEVNPLLESFGNAKTVRNDNSSRFGKFTQLQFDDAGILVGAKCRTYLLEKTRVIHHDAPERNYHIFYQL 289
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BLAST of mRNA_H-elongata_contig71817.14857.1 vs. uniprot
Match: A0A0W8DBS1_PHYNI (Myosin motor domain-containing protein n=26 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DBS1_PHYNI)

HSP 1 Score: 254 bits (648), Expect = 6.970e-75
Identity = 129/203 (63.55%), Postives = 157/203 (77.34%), Query Frame = 1 
Query:    7 ETSSGRGVEDMCSLNHLHEPAILYNLRTRFFNLLPYTYTGEICIAINPYQWL-DIYGKKLGSRYKEASKRADLPPHVYATSAQAFKGLKTYGINQSILVSGESGAGKTETVKILLNHLADIAGAHANDRTIDKVITSNPLLESFGNAKTLRNDNSSRFGKFTELQLDDRCRLSGSRSNTYLLEKVRVVSHARGERTYHIFYQV 612
            E     G+EDM +LN+LHE AILYN++ RF   LPYTYTG+ICIA+NPYQWL ++Y +++ S+Y   + R +LPPHVYATS  ++  +K + +NQSILVSGESGAGKTET KIL+NHLA IAG   ND TI K+I  NPLLESFGNAKT+RNDNSSRFGKFT+LQ D+   L G+R  TYLLEK RV+SH   ER YHIFYQ+
Sbjct:   85 ENLGPNGIEDMTALNYLHEAAILYNVKKRFLQKLPYTYTGDICIAVNPYQWLPELYSEQVQSQYLTKA-RDELPPHVYATSMASYNDMKRHEMNQSILVSGESGAGKTETTKILMNHLASIAGG-LNDYTIKKIIEVNPLLESFGNAKTVRNDNSSRFGKFTQLQFDNAGILVGARCRTYLLEKTRVISHEESERNYHIFYQL 285
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71817.14857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C9K4U6_SACJA4.340e-11989.71Unconventional myosin n=1 Tax=Saccharina japonica ... [more]
A0A6H5LE99_9PHAE2.930e-11888.73Myosin motor domain-containing protein n=2 Tax=Ect... [more]
A0A835YWV8_9STRA5.270e-9575.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A2P4XF43_9STRA2.950e-7862.09Myosin-like protein (Fragment) n=1 Tax=Phytophthor... [more]
A0A6A4ZAR3_9STRA1.210e-7663.55Myosin motor domain-containing protein (Fragment) ... [more]
A0A6A4YJX9_9STRA3.070e-7662.94Myosin motor domain-containing protein (Fragment) ... [more]
A0A397DV51_9STRA9.070e-7662.19Myosin motor domain-containing protein (Fragment) ... [more]
M4BYP7_HYAAE1.560e-7564.04Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A2D4BK75_PYTIN4.500e-7565.48Myosin motor domain-containing protein n=1 Tax=Pyt... [more]
A0A0W8DBS1_PHYNI6.970e-7563.55Myosin motor domain-containing protein n=26 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71817contigH-elongata_contig71817:1012..3170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score375.9
Seed ortholog evalue1.2e-101
Seed eggNOG ortholog2880.D7G0D6
Preferred nameMYO19
KEGG koko:K10356,ko:K10357,ko:K22366
GOsGO:0000001,GO:0000003,GO:0000011,GO:0000131,GO:0000132,GO:0000146,GO:0000149,GO:0000166,GO:0000226,GO:0000278,GO:0000281,GO:0000302,GO:0000331,GO:0000902,GO:0000904,GO:0000910,GO:0000912,GO:0000915,GO:0001101,GO:0001558,GO:0001654,GO:0001676,GO:0001726,GO:0001745,GO:0001750,GO:0001751,GO:0001754,GO:0001891,GO:0001931,GO:0001942,GO:0002250,GO:0002252,GO:0002253,GO:0002376,GO:0002429,GO:0002431,GO:0002433,GO:0002443,GO:0002449,GO:0002456,GO:0002460,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0002790,GO:0003006,GO:0003008,GO:0003014,GO:0003091,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005102,GO:0005488,GO:0005509,GO:0005515,GO:0005516,GO:0005524,GO:0005543,GO:0005546,GO:0005547,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005773,GO:0005794,GO:0005826,GO:0005829,GO:0005856,GO:0005882,GO:0005884,GO:0005886,GO:0005902,GO:0005903,GO:0005911,GO:0005929,GO:0005933,GO:0005934,GO:0005935,GO:0005937,GO:0005938,GO:0006082,GO:0006403,GO:0006582,GO:0006629,GO:0006631,GO:0006633,GO:0006725,GO:0006810,GO:0006886,GO:0006887,GO:0006892,GO:0006897,GO:0006904,GO:0006909,GO:0006928,GO:0006935,GO:0006950,GO:0006955,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007005,GO:0007010,GO:0007015,GO:0007017,GO:0007018,GO:0007029,GO:0007030,GO:0007031,GO:0007033,GO:0007049,GO:0007097,GO:0007107,GO:0007114,GO:0007117,GO:0007118,GO:0007154,GO:0007155,GO:0007163,GO:0007165,GO:0007166,GO:0007267,GO:0007268,GO:0007272,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007317,GO:0007349,GO:0007399,GO:0007423,GO:0007530,GO:0007531,GO:0007533,GO:0007584,GO:0007600,GO:0007601,GO:0007610,GO:0007626,GO:0008021,GO:0008064,GO:0008088,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008289,GO:0008298,GO:0008360,GO:0008361,GO:0008366,GO:0008544,GO:0008610,GO:0009058,GO:0009267,GO:0009306,GO:0009506,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009791,GO:0009826,GO:0009856,GO:0009860,GO:0009887,GO:0009888,GO:0009908,GO:0009914,GO:0009932,GO:0009966,GO:0009987,GO:0009991,GO:0010015,GO:0010026,GO:0010033,GO:0010035,GO:0010053,GO:0010054,GO:0010090,GO:0010091,GO:0010154,GO:0010243,GO:0010256,GO:0010522,GO:0010564,GO:0010639,GO:0010646,GO:0010720,GO:0010769,GO:0010770,GO:0010817,GO:0010821,GO:0010959,GO:0010970,GO:0010975,GO:0010976,GO:0012505,GO:0012506,GO:0014070,GO:0014074,GO:0014910,GO:0014911,GO:0015031,GO:0015629,GO:0015833,GO:0016020,GO:0016028,GO:0016043,GO:0016049,GO:0016050,GO:0016053,GO:0016192,GO:0016197,GO:0016358,GO:0016459,GO:0016460,GO:0016461,GO:0016462,GO:0016477,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017016,GO:0017022,GO:0017075,GO:0017076,GO:0017111,GO:0017137,GO:0017157,GO:0018958,GO:0019438,GO:0019748,GO:0019752,GO:0019867,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0019905,GO:0019953,GO:0019954,GO:0021700,GO:0022008,GO:0022402,GO:0022404,GO:0022405,GO:0022406,GO:0022412,GO:0022413,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0022610,GO:0022622,GO:0022898,GO:0023051,GO:0023052,GO:0023061,GO:0030010,GO:0030027,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030046,GO:0030048,GO:0030050,GO:0030054,GO:0030072,GO:0030073,GO:0030104,GO:0030133,GO:0030139,GO:0030141,GO:0030154,GO:0030175,GO:0030182,GO:0030307,GO:0030318,GO:0030334,GO:0030335,GO:0030424,GO:0030425,GO:0030426,GO:0030427,GO:0030479,GO:0030516,GO:0030554,GO:0030587,GO:0030659,GO:0030705,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0030899,GO:0031032,GO:0031033,GO:0031034,GO:0031090,GO:0031097,GO:0031152,GO:0031154,GO:0031175,GO:0031252,GO:0031254,GO:0031256,GO:0031267,GO:0031268,GO:0031270,GO:0031333,GO:0031344,GO:0031346,GO:0031410,GO:0031475,GO:0031585,GO:0031589,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031941,GO:0031965,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0031987,GO:0032009,GO:0032027,GO:0032060,GO:0032153,GO:0032155,GO:0032252,GO:0032271,GO:0032272,GO:0032400,GO:0032401,GO:0032402,GO:0032409,GO:0032412,GO:0032432,GO:0032433,GO:0032465,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032506,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032593,GO:0032787,GO:0032796,GO:0032868,GO:0032869,GO:0032870,GO:0032878,GO:0032879,GO:0032880,GO:0032940,GO:0032956,GO:0032970,GO:0032982,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033059,GO:0033267,GO:0033275,GO:0033298,GO:0033365,GO:0033554,GO:0034461,GO:0034613,GO:0034622,GO:0034642,GO:0034643,GO:0034762,GO:0034765,GO:0035091,GO:0035254,GO:0035255,GO:0035618,GO:0035619,GO:0035639,GO:0035690,GO:0035838,GO:0036094,GO:0036477,GO:0038093,GO:0038094,GO:0038096,GO:0040001,GO:0040007,GO:0040008,GO:0040011,GO:0040012,GO:0040017,GO:0040019,GO:0042051,GO:0042052,GO:0042221,GO:0042303,GO:0042330,GO:0042438,GO:0042440,GO:0042461,GO:0042462,GO:0042470,GO:0042476,GO:0042493,GO:0042542,GO:0042552,GO:0042592,GO:0042594,GO:0042623,GO:0042633,GO:0042641,GO:0042642,GO:0042759,GO:0042802,GO:0042803,GO:0042886,GO:0042995,GO:0043005,GO:0043008,GO:0043025,GO:0043167,GO:0043168,GO:0043169,GO:0043197,GO:0043200,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043269,GO:0043325,GO:0043332,GO:0043434,GO:0043436,GO:0043473,GO:0043531,GO:0043588,GO:0043900,GO:0043902,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044297,GO:0044309,GO:0044380,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044430,GO:0044433,GO:0044441,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044550,GO:0044703,GO:0044706,GO:0044764,GO:0044837,GO:0044877,GO:0045033,GO:0045111,GO:0045165,GO:0045177,GO:0045179,GO:0045184,GO:0045202,GO:0045335,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045773,GO:0045856,GO:0045921,GO:0045927,GO:0045995,GO:0046148,GO:0046189,GO:0046394,GO:0046530,GO:0046677,GO:0046683,GO:0046847,GO:0046872,GO:0046879,GO:0046903,GO:0046907,GO:0046982,GO:0046983,GO:0047497,GO:0048066,GO:0048193,GO:0048232,GO:0048278,GO:0048306,GO:0048308,GO:0048309,GO:0048311,GO:0048313,GO:0048364,GO:0048366,GO:0048367,GO:0048438,GO:0048467,GO:0048468,GO:0048469,GO:0048471,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048588,GO:0048589,GO:0048592,GO:0048608,GO:0048609,GO:0048638,GO:0048639,GO:0048646,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048749,GO:0048764,GO:0048765,GO:0048767,GO:0048768,GO:0048770,GO:0048812,GO:0048813,GO:0048814,GO:0048820,GO:0048827,GO:0048856,GO:0048858,GO:0048868,GO:0048869,GO:0048870,GO:0048871,GO:0048878,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050773,GO:0050775,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050808,GO:0050848,GO:0050877,GO:0050878,GO:0050891,GO:0050896,GO:0050900,GO:0050931,GO:0050953,GO:0050982,GO:0051015,GO:0051017,GO:0051020,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051270,GO:0051272,GO:0051279,GO:0051282,GO:0051285,GO:0051286,GO:0051293,GO:0051294,GO:0051301,GO:0051302,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051640,GO:0051641,GO:0051643,GO:0051645,GO:0051646,GO:0051647,GO:0051648,GO:0051649,GO:0051650,GO:0051653,GO:0051654,GO:0051656,GO:0051674,GO:0051686,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0051875,GO:0051904,GO:0051905,GO:0051924,GO:0051960,GO:0051962,GO:0055037,GO:0055044,GO:0060001,GO:0060002,GO:0060151,GO:0060281,GO:0060282,GO:0060284,GO:0060327,GO:0060328,GO:0060341,GO:0060429,GO:0060560,GO:0060627,GO:0060996,GO:0060997,GO:0061024,GO:0061387,GO:0061458,GO:0061572,GO:0061573,GO:0061640,GO:0061645,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070382,GO:0070648,GO:0070649,GO:0070650,GO:0070727,GO:0070887,GO:0070938,GO:0071229,GO:0071230,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071496,GO:0071520,GO:0071563,GO:0071695,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071889,GO:0071944,GO:0071963,GO:0071976,GO:0072330,GO:0072384,GO:0072657,GO:0072659,GO:0072676,GO:0072678,GO:0072697,GO:0080147,GO:0090066,GO:0090140,GO:0090426,GO:0090436,GO:0090558,GO:0090567,GO:0090596,GO:0090626,GO:0090627,GO:0090702,GO:0090726,GO:0097061,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097447,GO:0097458,GO:0097518,GO:0097574,GO:0097575,GO:0097708,GO:0097718,GO:0097730,GO:0097731,GO:0097733,GO:0098588,GO:0098630,GO:0098657,GO:0098743,GO:0098773,GO:0098793,GO:0098794,GO:0098805,GO:0098840,GO:0098858,GO:0098862,GO:0098916,GO:0099080,GO:0099081,GO:0099089,GO:0099111,GO:0099118,GO:0099120,GO:0099173,GO:0099402,GO:0099503,GO:0099512,GO:0099513,GO:0099515,GO:0099518,GO:0099536,GO:0099537,GO:0099568,GO:0099640,GO:0099738,GO:0106027,GO:0110009,GO:0110053,GO:0120025,GO:0120031,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0120104,GO:0120117,GO:0140027,GO:0140029,GO:0140056,GO:0150034,GO:1900006,GO:1900076,GO:1900078,GO:1901019,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901615,GO:1901617,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901981,GO:1902407,GO:1902410,GO:1902531,GO:1902716,GO:1902850,GO:1902875,GO:1902877,GO:1902903,GO:1902904,GO:1902936,GO:1903047,GO:1903076,GO:1903078,GO:1903119,GO:1903169,GO:1903260,GO:1903429,GO:1903431,GO:1903475,GO:1903478,GO:1903479,GO:1903530,GO:1903532,GO:1903541,GO:1903543,GO:1903827,GO:1903829,GO:1904062,GO:1904375,GO:1904377,GO:1904580,GO:1904582,GO:1904601,GO:1904752,GO:1904754,GO:1905392,GO:1905429,GO:1905430,GO:1905475,GO:1905477,GO:1905879,GO:1905881,GO:1990151,GO:1990753,GO:1990778,GO:1990819,GO:1990896,GO:1990904,GO:2000026,GO:2000145,GO:2000147,GO:2000241,GO:2000243,GO:2000689,GO:2000769,GO:2001257
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759,KOG2502@1,KOG2502@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03019,ko03029,ko03036,ko04131,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTubby C-terminal-like domain
Ec32 orthologEc-02_000840.1
Exons4
Model size612
Cds size612
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71817.14857.1prot_H-elongata_contig71817.14857.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71817 1012..3170 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931119.2613273-CDS-H-elongata_contig71817:1011..12211622931119.2613273-CDS-H-elongata_contig71817:1011..1221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71817 1012..1221 -
1691679706.129573-CDS-H-elongata_contig71817:1011..12211691679706.129573-CDS-H-elongata_contig71817:1011..1221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71817 1012..1221 -
1622931119.2838144-CDS-H-elongata_contig71817:1683..17971622931119.2838144-CDS-H-elongata_contig71817:1683..1797Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71817 1684..1797 -
1691679706.141164-CDS-H-elongata_contig71817:1683..17971691679706.141164-CDS-H-elongata_contig71817:1683..1797Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71817 1684..1797 -
1622931119.2999206-CDS-H-elongata_contig71817:2465..25761622931119.2999206-CDS-H-elongata_contig71817:2465..2576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71817 2466..2576 -
1691679706.1490624-CDS-H-elongata_contig71817:2465..25761691679706.1490624-CDS-H-elongata_contig71817:2465..2576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71817 2466..2576 -
1622931119.3197956-CDS-H-elongata_contig71817:2993..31701622931119.3197956-CDS-H-elongata_contig71817:2993..3170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71817 2994..3170 -
1691679706.1568189-CDS-H-elongata_contig71817:2993..31701691679706.1568189-CDS-H-elongata_contig71817:2993..3170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71817 2994..3170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71817.14857.1

>prot_H-elongata_contig71817.14857.1 ID=prot_H-elongata_contig71817.14857.1|Name=mRNA_H-elongata_contig71817.14857.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp
NAETSSGRGVEDMCSLNHLHEPAILYNLRTRFFNLLPYTYTGEICIAINP
YQWLDIYGKKLGSRYKEASKRADLPPHVYATSAQAFKGLKTYGINQSILV
SGESGAGKTETVKILLNHLADIAGAHANDRTIDKVITSNPLLESFGNAKT
LRNDNSSRFGKFTELQLDDRCRLSGSRSNTYLLEKVRVVSHARGERTYHI
FYQV
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mRNA from alignment at H-elongata_contig71817:1012..3170-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71817.14857.1 ID=mRNA_H-elongata_contig71817.14857.1|Name=mRNA_H-elongata_contig71817.14857.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2159bp|location=Sequence derived from alignment at H-elongata_contig71817:1012..3170- (Himanthalia elongata Himel1 dioecious)
AACGCGGAGACTTCGAGCGGTCGAGGCGTGGAGGACATGTGCTCCCTGAA
CCATTTGCATGAGCCCGCCATTCTGTACAACCTCCGAACGCGATTCTTCA
ACCTGCTTCCCTACACCTACACTGGAGAGATTTGCATCGCCATAAACCCT
TATCAGTGGCTGGATATATATGGGAAGGTACATATACGCACACACACGCG
CGTGTGACTGGTGCACGAGAGGTGACAGTTACATCGCCAAAAAAAGAAAA
TGATGTGAAATTTCCGTCGCCATACTGTTAGAGAGAAGAGGAGATACGCT
GATGCGTGCACAGCGATATTAGTATGCCAGCTGATAAAGATATTTGTCCC
GTTTTTTGCAGGACATACCACTTATTTGGGATTTGGCGCTGTGCCTTTTG
GGAAGCGGGCAAACACCCTTACTTGCCGAGCGGAAATAATTTATTTATTT
TTTTCAATCTTCTCCTTCCCGTTCCCTACCCGCTCTCCTTTTCCCAGCTT
TTAACCCTCTCCTTGTGTCGTTTACTTTGTTGTACCCTCTTCGCGGATTT
TTCCCGAATCTACCCGGCCTCCTCTTTTCTACCAAACCCAACAGAAGCTC
GGTAGTAGGTACAAGGAAGCTTCCAAGCGGGCCGATCTTCCTCCTCATGT
ATACGCGACTAGCGCTCAGGCCTTCAAGGGCTTGAAGACATACGGGATCA
ACCAGGTGTGTGATGCCGCTCTGTTGTTACCCTTGACCTCTTTGGTTAGC
ATATGGAGTCTTGTATTGTCGAGCGCGGTACACGGTAGCCTCGCGGAGCA
TGGCCTTAGGGTAGAGGCTAGTACTGCCTACCATAGCCTAGCATAGCTTA
GGGTAGAGGCTATTACTGCTTGCCAAGGGCATAACATGCATTCAGAGTCT
TTTCTGGACGATTTTGTGTCTTAGTGGCTGTAGGGGGCTTGTCAATTTTT
TTTGGGGGATTCACTGATTTCAATTTTTATTTAATAGTATTTAGAAAAAC
AAAAACTGCCAGTTTAAGCAGCTCTCTATAAGCTTGCGTGGCATTTCAAT
GCCTAGTCTTTTTCACAAATTGATGTAGCCACCGAATCAAAAGCTTTATG
TGGCTGCACTTTGACCTGTCATTTTGCGCGCTTTCGGAAATATTAGGAGC
GTTAGAATAACGAATTCCAAGGATAAAGTGCTTACATATGCGAAATGTTA
TGAATAAATGCTTAGTGAAACACCACCGCGTCTTGTTTTCTTCTTGTTTT
TGTTTTCTTCTCGTGTGCTGTTTTGTTTGTTTGTTGATTTGTTTGTTCCT
TCTTTCGGGATGTTTTTTTTGTCAATTTGTGTTTGTTTGTTTTTTTGGGG
GGGGCGGGGGGGGGGTTGTTCAGAGTATCCTTGTCAGTGGAGAGAGTGGT
GCGGGCAAGACCGAGACTGTGAAGATCCTTCTTAACCACCTGGCCGATAT
CGCCGGGGCACACGCTAACGACCGCACCATTGACAAGGTGATTCGACGTC
ATACATTCCTCCGTCGTTTGTCATAGCCGTTACTCTCTTCTGCCCTATAT
TCCTTTTGTATTGAGGAGAGAGTACCTTGAACGTTTTCCTCCTTTCCGGA
TGGTGTGATTTTGTTTTTCTACCTTGTGACCACGGGCTGGATTTTGACAT
CAGCTTACGTGAGAATTCAATCAATTTAAAAAAAAGTTTCCCGATATAAA
GTTTATCGGGTCAACGGAATAATGTCAGAGGTCTCCATGGTTATCCCGTA
CTTTATACTTCATCTAGAGACTATGACGCTAAACCGAAGAATATAGAGTG
GACTGGATAATATTAATAAGAGGAGTTGTTGGAGAGAGAGGGGGGGAATA
AGTGACACTATGATCAGTCTATACATAGAAGCTAGGTATTCTATTTTTTA
ATTATTTTTAATTATTTTTAATTATTTTTAATTATTTACTCTTTAAAAGG
TGATCACGTCCAACCCTTTGCTGGAGAGCTTCGGGAACGCCAAGACTCTC
AGAAACGACAATAGCTCGCGCTTCGGAAAATTTACGGAACTACAGCTAGA
CGACCGATGCCGGCTTTCCGGGTCGCGGAGCAACACGTACCTTCTGGAGA
AGGTCCGCGTCGTCTCCCACGCCAGGGGAGAGCGAACCTATCACATATTT
TACCAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig71817:1012..3170-

>mRNA_H-elongata_contig71817.14857.1 ID=mRNA_H-elongata_contig71817.14857.1|Name=mRNA_H-elongata_contig71817.14857.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1224bp|location=Sequence derived from alignment at H-elongata_contig71817:1012..3170- (Himanthalia elongata Himel1 dioecious)
AACGCGGAGACTTCGAGCGGTCGAGGCGTGGAGGACATGTGCTCCCTGAA
CCATTTGCATGAGCCCGCCATTCTGTACAACCTCCGAACGCGATTCTTCA
ACCTGCTTCCCTACACCTACACTGGAGAGATTTGCATCGCCATAAACCCT
TATCAGTGGCTGGATATATATGGGAAGAACGCGGAGACTTCGAGCGGTCG
AGGCGTGGAGGACATGTGCTCCCTGAACCATTTGCATGAGCCCGCCATTC
TGTACAACCTCCGAACGCGATTCTTCAACCTGCTTCCCTACACCTACACT
GGAGAGATTTGCATCGCCATAAACCCTTATCAGTGGCTGGATATATATGG
GAAGAAGCTCGGTAGTAGGTACAAGGAAGCTTCCAAGCGGGCCGATCTTC
CTCCTCATGTATACGCGACTAGCGCTCAGGCCTTCAAGGGCTTGAAGACA
TACGGGATCAACCAGAAGCTCGGTAGTAGGTACAAGGAAGCTTCCAAGCG
GGCCGATCTTCCTCCTCATGTATACGCGACTAGCGCTCAGGCCTTCAAGG
GCTTGAAGACATACGGGATCAACCAGAGTATCCTTGTCAGTGGAGAGAGT
GGTGCGGGCAAGACCGAGACTGTGAAGATCCTTCTTAACCACCTGGCCGA
TATCGCCGGGGCACACGCTAACGACCGCACCATTGACAAGAGTATCCTTG
TCAGTGGAGAGAGTGGTGCGGGCAAGACCGAGACTGTGAAGATCCTTCTT
AACCACCTGGCCGATATCGCCGGGGCACACGCTAACGACCGCACCATTGA
CAAGGTGATCACGTCCAACCCTTTGCTGGAGAGCTTCGGGAACGCCAAGA
CTCTCAGAAACGACAATAGCTCGCGCTTCGGAAAATTTACGGAACTACAG
CTAGACGACCGATGCCGGCTTTCCGGGTCGCGGAGCAACACGTACCTTCT
GGAGAAGGTCCGCGTCGTCTCCCACGCCAGGGGAGAGCGAACCTATCACA
TATTTTACCAGGTGGTGATCACGTCCAACCCTTTGCTGGAGAGCTTCGGG
AACGCCAAGACTCTCAGAAACGACAATAGCTCGCGCTTCGGAAAATTTAC
GGAACTACAGCTAGACGACCGATGCCGGCTTTCCGGGTCGCGGAGCAACA
CGTACCTTCTGGAGAAGGTCCGCGTCGTCTCCCACGCCAGGGGAGAGCGA
ACCTATCACATATTTTACCAGGTG
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