mRNA_H-elongata_contig7157.14827.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7157.14827.1
Unique NamemRNA_H-elongata_contig7157.14827.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.760e-39
Identity = 96/264 (36.36%), Postives = 149/264 (56.44%), Query Frame = 1
Query:    7 QAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVVIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKARELKIDQQLYVESVVETFDVKKASNI--PTTSGVPTLSKADKPRNPKEKGKMRKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTH-KKAVMIMQYLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKEVISWYSRVQEVTA 789
            Q+ YGL  A R WN+     + ++GFE A  DP V  +  + E E +V ++VD+++   + +A +    A + +KF++KD+G AR+ +G  I  N + R L I Q+ Y ES+++TF  + A     P   GV  L+KAD+P+  ++K KM+  PYR  VG+ +M+ A  TRPD +  V  ++RF ENP   H    +  ++YLL T D  I Y GQ  G  ++AY +D+D+  + D RR V   +LML    + W S  Q+  A
Sbjct:  253 QSLYGLKHASRVWNDTIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSVVGS-LMYLACGTRPDVSVAVAKLSRFLENPGEKHWDSGIKAVRYLLKTKDVGIVYDGQ-LGTHLEAY-SDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVA 511          
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Match: A0A6A4F359_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F359_9STRA)

HSP 1 Score: 150 bits (378), Expect = 3.230e-39
Identity = 96/264 (36.36%), Postives = 149/264 (56.44%), Query Frame = 1
Query:    7 QAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVVIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKARELKIDQQLYVESVVETFDVKKASNI--PTTSGVPTLSKADKPRNPKEKGKMRKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTHKKA-VMIMQYLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKEVISWYSRVQEVTA 789
            Q+ YGL QA R WN      + ++GFE A  DP V  +  + E E +V ++VDD++   + +A +    A + +KF++KDMG AR+ +G  I  + + R L I Q+ Y ES+++ F  + A     P   GV  L+KAD+P+  ++K KM+  PYR  VG+ +M+ A  TRPD +  V  ++RF ENP   H  A + +++YLL T D  I Y G   G  ++AY +D+D+  + D RR V   +LM+    + W S  Q+  A
Sbjct:   28 QSLYGLKQASRVWNETIDKHIKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQIEEDKAKMKSKPYRSLVGS-LMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAY-SDADWAGNRDDRRSVSGMLLMMCGAPVVWRSTFQKTVA 286          
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA)

HSP 1 Score: 150 bits (378), Expect = 5.750e-39
Identity = 95/264 (35.98%), Postives = 149/264 (56.44%), Query Frame = 1
Query:    7 QAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVVIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKARELKIDQQLYVESVVETFDVKKASN--IPTTSGVPTLSKADKPRNPKEKGKMRKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTHKKA-VMIMQYLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKEVISWYSRVQEVTA 789
            Q+ YGL QA R WN      + ++GFE A  DP V  +  + E E +V ++VDD++   + +A +    A + +KF++KD+G AR+ +G  I  + + R L I Q+ Y ES+++ F  + A     P   GV  L+KAD+P+  ++K KM+  PYR  VG+ +M+ A  TRPD +  V  ++RF ENP   H  A + +++YLL T D  I Y G   G  ++AY +D+++  + D RR V   +LML    + W S  Q+  A
Sbjct:   59 QSLYGLKQASRVWNETIDKHLKSMGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPWLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGS-LMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAY-SDANWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVA 317          
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Match: A0A6A3HKQ8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HKQ8_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.100e-38
Identity = 95/264 (35.98%), Postives = 147/264 (55.68%), Query Frame = 1
Query:    7 QAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVVIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKARELKIDQQLYVESVVETFDVKKASNI--PTTSGVPTLSKADKPRNPKEKGKMRKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTHKKA-VMIMQYLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKEVISWYSRVQEVTA 789
            Q+ YGL QA R WN      + ++GFE A  DP V  +  + E E +V ++VDD++   + +  +    A + +KF++KD+G AR+ +G  I  + + R L I Q+ Y ES+++ F  + A     P   GV  L+KAD+P+  + K KM+  PYR  VG+ +M+ A  TRPD +  V  ++RF ENP   H  A + +++YLL T D  I Y G   G  ++AY +D+D+  + D RR V   +LML    + W S  Q+  A
Sbjct:   59 QSLYGLKQASRVWNETIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQKTVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEVKAKMKSKPYRSLVGS-LMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAY-SDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVA 317          
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Match: A0A6A3VCN8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3VCN8_9STRA)

HSP 1 Score: 147 bits (370), Expect = 2.980e-38
Identity = 96/264 (36.36%), Postives = 148/264 (56.06%), Query Frame = 1
Query:    7 QAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVVIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKARELKIDQQLYVESVVETFDVK--KASNIPTTSGVPTLSKADKPRNPKEKGKMRKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTHKKA-VMIMQYLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKEVISWYSRVQEVTA 789
            Q+ YGL QA R WN      + ++GFE A  DP V  +  + E E +V ++VDD++   + +A +    A + +KF++KDMG AR+ +   I  + + R L I Q+ Y ES+++ F  +  K    P   GV  L+KAD+P+  ++K KM+  PYR  VG+ +M+ A  TRPD +  V  ++RF ENP   H  A + +++YLL T D  I Y G   G  ++AY +D+D+  + D RR V   +LML    + W S  Q+  A
Sbjct:    4 QSLYGLKQASRVWNETIDKHLKSMGFEPADADPCVYTRG-EGEDECIVRLYVDDMLIASRQKAVIASEKAGIAEKFRIKDMGRARFILSIEIDYDIERRTLGISQKAYTESIIKKFGQENTKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGS-LMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAY-SDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVA 262          
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA)

HSP 1 Score: 152 bits (383), Expect = 4.100e-38
Identity = 97/264 (36.74%), Postives = 149/264 (56.44%), Query Frame = 1
Query:    7 QAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVVIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKARELKIDQQLYVESVVETFDVKKASNI--PTTSGVPTLSKADKPRNPKEKGKMRKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTHKKA-VMIMQYLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKEVISWYSRVQEVTA 789
            Q+ YGL QA R WN      + ++GFE A  DP V  +  + E E +V ++VDD++   +  A +    A + +KF++KDMG AR+ +G  I  + + R L I Q+ Y ES+++ F  + A     P   GV  L+KAD+P+  ++K KM+  PYR  VG+ +M+ A  TRPD +  V  ++RF ENP   H  A + +++YLL T D  I Y G   G  ++AY +D+D+  + D RR V   +LML +  + W S  Q+  A
Sbjct:  551 QSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKLKPYRSLVGS-LMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAY-SDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVA 809          
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Match: A0A6A3V7V5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3V7V5_9STRA)

HSP 1 Score: 145 bits (366), Expect = 4.620e-38
Identity = 95/264 (35.98%), Postives = 148/264 (56.06%), Query Frame = 1
Query:    7 QAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVVIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKARELKIDQQLYVESVVETFDVKKASNI--PTTSGVPTLSKADKPRNPKEKGKMRKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTHKKA-VMIMQYLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKEVISWYSRVQEVTA 789
            Q+ YGL QA R WN      + ++GFE A  DP V  +   D+ E +V ++VDD++   + +A +    A + +KF++KD+G AR+ +G  I  + + R L I Q+ Y ES+++ F  + A     P   GV  L+KAD+P+   E+ KM+  PYR  VG+ +M+ A  TRPD +  V  ++RF ENP   H  A + +++YLL T D  I Y G   G  ++AY +++D+  + D RR V   +LML    + W S  Q+  A
Sbjct:   59 QSLYGLKQASRVWNEMINKHLKSMGFEPADADPCVYTRGEGDD-ECIVCLYVDDMLIASRQKAVIASVKARIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGRENAKPCLTPLEPGV-NLTKADEPQT--EEAKMKSKPYRSLVGS-LMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAY-SNADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVA 315          
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA)

HSP 1 Score: 150 bits (380), Expect = 4.630e-38
Identity = 96/264 (36.36%), Postives = 149/264 (56.44%), Query Frame = 1
Query:    7 QAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVVIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKARELKIDQQLYVESVVETFDVKKASNI--PTTSGVPTLSKADKPRNPKEKGKMRKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTHKKA-VMIMQYLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKEVISWYSRVQEVTA 789
            Q+ YGL QA R WN      + ++GFE A  DP V  +  + E E +V ++VDD++   + +A +    A + +KF++KDMG AR+ +G  I  + + R L I Q+ Y ES+++ F  + A     P   GV  L+KAD+P+  ++K KM+  PYR  VG+ +M+ +  TRPD +  V  ++RF ENP   H  A + +++YLL T D  I Y G   G  ++AY +D+D+  + D RR V   +LML    + W S  Q+  A
Sbjct:  285 QSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGS-LMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAY-SDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQKTVA 543          
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Match: A0A6G0R8U1_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0R8U1_9STRA)

HSP 1 Score: 150 bits (378), Expect = 8.780e-38
Identity = 95/264 (35.98%), Postives = 148/264 (56.06%), Query Frame = 1
Query:    7 QAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVVIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKARELKIDQQLYVESVVETFDVKKASNI--PTTSGVPTLSKADKPRNPKEKGKMRKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTHKKA-VMIMQYLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKEVISWYSRVQEVTA 789
            Q+ YGL QA R WN      + ++GFE A  DP V  +  + E E +V ++VDD++   + +  +    A + +KF++KD+G AR+ +G  I  + + R L I Q+ Y ES+++ +  + A     P   GV  L+KAD+P+  ++K KM+  PYR  VG  +M+ A  TRPD +  V  ++RF ENP   H  A + +++YLL T D RI Y G   G  ++AY +D+D+  + D RR V   +LML    + W S  Q+  A
Sbjct:  302 QSLYGLKQASRVWNETIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIVSRQKTVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKYGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGN-LMYLACGTRPDVSVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVRIVYDGL-LGTQLEAY-SDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVA 560          
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 149 bits (376), Expect = 9.830e-38
Identity = 96/264 (36.36%), Postives = 147/264 (55.68%), Query Frame = 1
Query:    7 QAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVVIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKARELKIDQQLYVESVVETFDVKKASNI--PTTSGVPTLSKADKPRNPKEKGKMRKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTHKKA-VMIMQYLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKEVISWYSRVQEVTA 789
            Q+ YGL QA R WN      + + GFE A  DP V  +  + E E +V ++VDD++   + +A +    A + +KF++KD+G AR+ +G  I  + + R L I Q+ Y ES+++ F  + A     P   GV  L+KAD+P+  ++K KM+  PYR  VG+ +M+ A  TRPD +  V  ++RF ENP   H  A + +++YLL T D  I Y G   G   +AY +D+D+  + D RR V   +LML    + W S  Q+  A
Sbjct:  220 QSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGS-LMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAY-SDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVA 478          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3Q8N8_9STRA2.760e-3936.36Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A4F359_9STRA3.230e-3936.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0MK94_9STRA5.750e-3935.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3HKQ8_9STRA1.100e-3835.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3VCN8_9STRA2.980e-3836.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3YGI7_9STRA4.100e-3836.74Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3V7V5_9STRA4.620e-3835.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3DSS8_9STRA4.630e-3836.36Retrovirus-related Pol polyprotein from transposon... [more]
A0A6G0R8U1_9STRA8.780e-3835.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3Q908_9STRA9.830e-3836.36Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7157contigH-elongata_contig7157:6080..6868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score137.9
Seed ortholog evalue6.9e-30
Seed eggNOG ortholog65672.G4TWW2
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size789
Cds size789
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931116.9030018-CDS-H-elongata_contig7157:6079..68681622931116.9030018-CDS-H-elongata_contig7157:6079..6868Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7157 6080..6868 -
1691679705.1531389-CDS-H-elongata_contig7157:6079..68681691679705.1531389-CDS-H-elongata_contig7157:6079..6868Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7157 6080..6868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7157.14827.1prot_H-elongata_contig7157.14827.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7157 6080..6868 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7157.14827.1

>prot_H-elongata_contig7157.14827.1 ID=prot_H-elongata_contig7157.14827.1|Name=mRNA_H-elongata_contig7157.14827.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=263bp
VEQAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVV
VIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKA
RELKIDQQLYVESVVETFDVKKASNIPTTSGVPTLSKADKPRNPKEKGKM
RKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTHKKAVMIMQ
YLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKE
VISWYSRVQEVTA
back to top

mRNA from alignment at H-elongata_contig7157:6080..6868-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7157.14827.1 ID=mRNA_H-elongata_contig7157.14827.1|Name=mRNA_H-elongata_contig7157.14827.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=789bp|location=Sequence derived from alignment at H-elongata_contig7157:6080..6868- (Himanthalia elongata Himel1 dioecious)
GTTGAACAAGCCTTTTATGGACTCGTACAGGCGGGGAGGTGCTGGAACAA CAAGTTCTGCGACGAAATGATGGCGATTGGATTCGAGCAGGCAAAGACGG ATCCGTCCGTGATCCGCAAGGTCGTTGACGACGAGGCGGAGATGGTGGTG GTCATACACGTAGACGACATTATTTACCACGTCAAAGACCAAGCGACGAT GGATAGATTTTCGGCTGAGCTTCGACAGAAGTTCAAATTGAAGGACATGG GCGACGCCAGGTACTACATGGGCTGCCACATCACGAGGAACCGCAAAGCG CGCGAGTTGAAGATCGACCAACAATTGTACGTGGAGTCGGTGGTGGAAAC GTTCGACGTCAAGAAGGCAAGCAATATACCGACTACGTCGGGTGTGCCAA CACTCTCAAAGGCGGACAAACCGCGGAACCCAAAGGAAAAGGGGAAAATG AGGAAGTTTCCATACCGGGAGGCAGTGGGGGCGTTTATTATGTGGAGGGC GACAATGACACGGCCGGACACTGCGAGCGAAGTACGCGCTGTGGCCAGGT TCTGCGAAAACCCTGAGCCGACGCATAAGAAGGCGGTGATGATCATGCAG TACCTCCTTCACACGAACGATTGGAGGATTACATACGGTGGACAGGGCTG TGGACTCTGCATGAAGGCATACTACACGGACTCAGATTTCGGGGCCTCGG TGGATACAAGACGATTGGTGGAGGATGCGGTGTTGATGCTGGCAAAAGAG GTGATCAGCTGGTACTCAAGGGTGCAAGAAGTGACAGCA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7157:6080..6868-

>mRNA_H-elongata_contig7157.14827.1 ID=mRNA_H-elongata_contig7157.14827.1|Name=mRNA_H-elongata_contig7157.14827.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1578bp|location=Sequence derived from alignment at H-elongata_contig7157:6080..6868- (Himanthalia elongata Himel1 dioecious)
GTTGAACAAGCCTTTTATGGACTCGTACAGGCGGGGAGGTGCTGGAACAA
CAAGTTCTGCGACGAAATGATGGCGATTGGATTCGAGCAGGCAAAGACGG
ATCCGTCCGTGATCCGCAAGGTCGTTGACGACGAGGCGGAGATGGTGGTG
GTCATACACGTAGACGACATTATTTACCACGTCAAAGACCAAGCGACGAT
GGATAGATTTTCGGCTGAGCTTCGACAGAAGTTCAAATTGAAGGACATGG
GCGACGCCAGGTACTACATGGGCTGCCACATCACGAGGAACCGCAAAGCG
CGCGAGTTGAAGATCGACCAACAATTGTACGTGGAGTCGGTGGTGGAAAC
GTTCGACGTCAAGAAGGCAAGCAATATACCGACTACGTCGGGTGTGCCAA
CACTCTCAAAGGCGGACAAACCGCGGAACCCAAAGGAAAAGGGGAAAATG
AGGAAGTTTCCATACCGGGAGGCAGTGGGGGCGTTTATTATGTGGAGGGC
GACAATGACACGGCCGGACACTGCGAGCGAAGTACGCGCTGTGGCCAGGT
TCTGCGAAAACCCTGAGCCGACGCATAAGAAGGCGGTGATGATCATGCAG
TACCTCCTTCACACGAACGATTGGAGGATTACATACGGTGGACAGGGCTG
TGGACTCTGCATGAAGGCATACTACACGGACTCAGATTTCGGGGCCTCGG
TGGATACAAGACGATTGGTGGAGGATGCGGTGTTGATGCTGGCAAAAGAG
GTGATCAGCTGGTACTCAAGGGTGCAAGAAGTGACAGCAGTTGAACAAGC
CTTTTATGGACTCGTACAGGCGGGGAGGTGCTGGAACAACAAGTTCTGCG
ACGAAATGATGGCGATTGGATTCGAGCAGGCAAAGACGGATCCGTCCGTG
ATCCGCAAGGTCGTTGACGACGAGGCGGAGATGGTGGTGGTCATACACGT
AGACGACATTATTTACCACGTCAAAGACCAAGCGACGATGGATAGATTTT
CGGCTGAGCTTCGACAGAAGTTCAAATTGAAGGACATGGGCGACGCCAGG
TACTACATGGGCTGCCACATCACGAGGAACCGCAAAGCGCGCGAGTTGAA
GATCGACCAACAATTGTACGTGGAGTCGGTGGTGGAAACGTTCGACGTCA
AGAAGGCAAGCAATATACCGACTACGTCGGGTGTGCCAACACTCTCAAAG
GCGGACAAACCGCGGAACCCAAAGGAAAAGGGGAAAATGAGGAAGTTTCC
ATACCGGGAGGCAGTGGGGGCGTTTATTATGTGGAGGGCGACAATGACAC
GGCCGGACACTGCGAGCGAAGTACGCGCTGTGGCCAGGTTCTGCGAAAAC
CCTGAGCCGACGCATAAGAAGGCGGTGATGATCATGCAGTACCTCCTTCA
CACGAACGATTGGAGGATTACATACGGTGGACAGGGCTGTGGACTCTGCA
TGAAGGCATACTACACGGACTCAGATTTCGGGGCCTCGGTGGATACAAGA
CGATTGGTGGAGGATGCGGTGTTGATGCTGGCAAAAGAGGTGATCAGCTG
GTACTCAAGGGTGCAAGAAGTGACAGCA
back to top