mRNA_H-elongata_contig71094.14771.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71094.14771.1
Unique NamemRNA_H-elongata_contig71094.14771.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig71094.14771.1 vs. uniprot
Match: A0A6H5K9R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R0_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 9.770e-31
Identity = 100/188 (53.19%), Postives = 122/188 (64.89%), Query Frame = 1 
Query:    1 DADALLARLAGKAKKAAAAAMSASRA-GTTTPFLPVSLDDDENLEKEVPRNAKADHHACVSDGASGFAYAG-----GAAV-----------EMVAKAA--TVPVAAAGVGAMAVDG-ARLAQLCKEDKAKVARLMQDLAKLRSEKDAQKARFERLRAQNEDIVREVARLRVKFGQSIQLLRKYQVFVR 504
            DA+ALLARLAGKAK+AAA A+SAS A G  TP  P +      +   V RN K+     ++D A    ++G     GAA+           E +A A    VP  AA  G +A+DG ARLA+LC+EDK KVARLMQDL KLR EK+ QK RFERLRAQNE IV+E+A L+VKFGQS+QLLRKYQ  V+
Sbjct:  212 DAEALLARLAGKAKQAAAVALSASAASGGMTPD-PTARAAPTGI---VTRNVKSAGVESITDAAVRVRFSGDTGHVGAAIRRSTTGEECRDESMATAVGRQVPEVAAAAGGVAIDGGARLAELCQEDKTKVARLMQDLVKLRQEKEGQKTRFERLRAQNESIVKEMAGLKVKFGQSMQLLRKYQSIVQ 395
[Close]
BLAST of mRNA_H-elongata_contig71094.14771.1 vs. uniprot
Match: D7FS85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS85_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 2.430e-30
Identity = 98/193 (50.78%), Postives = 118/193 (61.14%), Query Frame = 1 
Query:    1 DADALLARLAGKAKKAAAAAMSASRA-GTTTPFLPVSLDDDENLEKEVPRNAKADHHACVSDGASGFAYAG-----GAAVE-------------MVAKAATVPVAAAGVGAMAVDG-ARLAQLCKEDKAKVARLMQDLAKLRSEKDAQKARFERLRAQNEDIVREVARLRVKFGQSIQLLRKYQVFVRSVSVA 519
            DA+ALLARLAGKAK+AAA A+SAS A G  TP L             V RN K+     ++D      ++G     GAA++             + A    VP  AA  G +AVDG ARLA+LCKEDK KVARLMQDL KLR EK+ QK RFERLRAQNE IV+++A L+ KFGQS+QLLRKYQ  V+    A
Sbjct:  123 DAEALLARLAGKAKQAAAVALSASAASGGMTPDLTARSAPTGT----VTRNVKSAGVESITDATVRVRFSGDKGHLGAAIKRGTTGEDCRDESTVTAVGRQVPEVAAAAGGVAVDGGARLAELCKEDKTKVARLMQDLVKLRQEKEGQKTRFERLRAQNESIVKQMAGLKDKFGQSMQLLRKYQSIVQEGGAA 311
[Close]
BLAST of mRNA_H-elongata_contig71094.14771.1 vs. uniprot
Match: A0A835Z7B7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7B7_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 8.380e-8
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  292 ARLAQLCKEDKAKVARLMQDLAKLRSEKDAQKARFERLRAQNEDIVREVARLRVKFGQSIQLLRKYQ 492
            ARL  LC  DKAKVA+LMQ+L+  ++E  A+  R ERLRAQN +IV E A  R +  Q++ LL+KYQ
Sbjct:   44 ARLVDLCPSDKAKVAKLMQELSAAQAEAAARAHRLERLRAQNAEIVAETADTRSRLTQAVLLLKKYQ 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71094.14771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K9R0_9PHAE9.770e-3153.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS85_ECTSI2.430e-3050.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z7B7_9STRA8.380e-853.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71094contigH-elongata_contig71094:12..1080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_004990.1
Exons2
Model size531
Cds size531
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931110.1394112-CDS-H-elongata_contig71094:11..1941622931110.1394112-CDS-H-elongata_contig71094:11..194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71094 12..194 -
1691679702.3426518-CDS-H-elongata_contig71094:11..1941691679702.3426518-CDS-H-elongata_contig71094:11..194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71094 12..194 -
1622931110.1571188-CDS-H-elongata_contig71094:732..10801622931110.1571188-CDS-H-elongata_contig71094:732..1080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71094 733..1080 -
1691679702.3533022-CDS-H-elongata_contig71094:732..10801691679702.3533022-CDS-H-elongata_contig71094:732..1080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71094 733..1080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71094.14771.1prot_H-elongata_contig71094.14771.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71094 12..1080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71094.14771.1

>prot_H-elongata_contig71094.14771.1 ID=prot_H-elongata_contig71094.14771.1|Name=mRNA_H-elongata_contig71094.14771.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp
DADALLARLAGKAKKAAAAAMSASRAGTTTPFLPVSLDDDENLEKEVPRN
AKADHHACVSDGASGFAYAGGAAVEMVAKAATVPVAAAGVGAMAVDGARL
AQLCKEDKAKVARLMQDLAKLRSEKDAQKARFERLRAQNEDIVREVARLR
VKFGQSIQLLRKYQVFVRSVSVALTD*
back to top

mRNA from alignment at H-elongata_contig71094:12..1080-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71094.14771.1 ID=mRNA_H-elongata_contig71094.14771.1|Name=mRNA_H-elongata_contig71094.14771.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1069bp|location=Sequence derived from alignment at H-elongata_contig71094:12..1080- (Himanthalia elongata Himel1 dioecious)
GATGCCGACGCTCTGCTCGCGCGCTTGGCCGGCAAGGCGAAGAAGGCGGC
CGCGGCGGCGATGTCGGCATCGCGCGCGGGAACCACAACGCCGTTCCTTC
CGGTGTCTTTGGACGATGATGAAAACCTCGAGAAGGAAGTACCGAGAAAC
GCCAAGGCTGACCATCACGCTTGCGTGAGTGATGGTGCCAGTGGATTCGC
TTATGCTGGTGGGGCAGCAGTGGAGATGGTTGCGAAGGCAGCGACGGTGC
CAGTGGCGGCGGCAGGGGTAGGGGCAATGGCAGTGGACGGAGCGCGCCTC
GCTCAGCTCTGCAAGGAGGACAAGGCAAAGGTGGCGCGTCTCATGCAGGT
AAGGATATCCAATCCGAGTTTCAGCCCTTTGATGCAACGTGACGCACAAC
AATGGGTCCTGGTTGGTCATCGTACGGCCCCCCTATCTAGGTCTGCGGCG
AGCACAGAGAGCCACCAGTGCGCAAGGAGCAAGGGGTTGTACACCCCGGG
CCTAAACGATCGCACGAAACGTTGCGCCAGCGTGGAACGATCTCACGAAG
GCCATCCCGGAGCCATGCCCAGGACGTGTCTGAACTGTACCCTCCCATTG
TTGCAGACAAAAATCGAGAAGGATCACCACTCGTTGTTCCCTGTAGTGGG
GTTTATGTCCTGTACAACTGTCGGCACTGCAGAAAAAACCGCCTTGCGGT
AATCCCCATCTCACTCTATCCTACCCAAGGCAACGAACGATATGGGCGGT
TTAATGCATCGTTCTTCTCTACCCCCCCCCCACCCTGTCTCCTTCCGCTT
CCTTCACCCATGACCACCAATCCTGGAAATCTTGGTATGCCTCATCCAAA
CATATATAACCTGCTTGTGCGTGAACGCACTCCCAGGACCTCGCCAAGCT
CAGGTCTGAAAAGGACGCACAGAAAGCTCGCTTCGAGCGGCTCCGCGCGC
AGAACGAGGATATCGTGAGGGAGGTGGCGAGGCTCCGCGTCAAGTTCGGC
CAAAGTATTCAGCTCCTGAGGAAATATCAGGTATTTGTCCGCAGTGTTTC
TGTTGCTCTTACTGATTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig71094:12..1080-

>mRNA_H-elongata_contig71094.14771.1 ID=mRNA_H-elongata_contig71094.14771.1|Name=mRNA_H-elongata_contig71094.14771.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at H-elongata_contig71094:12..1080- (Himanthalia elongata Himel1 dioecious)
GATGCCGACGCTCTGCTCGCGCGCTTGGCCGGCAAGGCGAAGAAGGCGGC
CGCGGCGGCGATGTCGGCATCGCGCGCGGGAACCACAACGCCGTTCCTTC
CGGTGTCTTTGGACGATGATGAAAACCTCGAGAAGGAAGTACCGAGAAAC
GCCAAGGCTGACCATCACGCTTGCGTGAGTGATGGTGCCAGTGGATTCGC
TTATGCTGGTGGGGCAGCAGTGGAGATGGTTGCGAAGGCAGCGACGGTGC
CAGTGGCGGCGGCAGGGGTAGGGGCAATGGCAGTGGACGGAGCGCGCCTC
GCTCAGCTCTGCAAGGAGGACAAGGCAAAGGTGGCGCGTCTCATGCAGGA
TGCCGACGCTCTGCTCGCGCGCTTGGCCGGCAAGGCGAAGAAGGCGGCCG
CGGCGGCGATGTCGGCATCGCGCGCGGGAACCACAACGCCGTTCCTTCCG
GTGTCTTTGGACGATGATGAAAACCTCGAGAAGGAAGTACCGAGAAACGC
CAAGGCTGACCATCACGCTTGCGTGAGTGATGGTGCCAGTGGATTCGCTT
ATGCTGGTGGGGCAGCAGTGGAGATGGTTGCGAAGGCAGCGACGGTGCCA
GTGGCGGCGGCAGGGGTAGGGGCAATGGCAGTGGACGGAGCGCGCCTCGC
TCAGCTCTGCAAGGAGGACAAGGCAAAGGTGGCGCGTCTCATGCAGGACC
TCGCCAAGCTCAGGTCTGAAAAGGACGCACAGAAAGCTCGCTTCGAGCGG
CTCCGCGCGCAGAACGAGGATATCGTGAGGGAGGTGGCGAGGCTCCGCGT
CAAGTTCGGCCAAAGTATTCAGCTCCTGAGGAAATATCAGGTATTTGTCC
GCAGTGTTTCTGTTGCTCTTACTGATTGAGACCTCGCCAAGCTCAGGTCT
GAAAAGGACGCACAGAAAGCTCGCTTCGAGCGGCTCCGCGCGCAGAACGA
GGATATCGTGAGGGAGGTGGCGAGGCTCCGCGTCAAGTTCGGCCAAAGTA
TTCAGCTCCTGAGGAAATATCAGGTATTTGTCCGCAGTGTTTCTGTTGCT
CTTACTGATTGA
back to top