mRNA_H-elongata_contig70953.14756.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70953.14756.1
Unique NamemRNA_H-elongata_contig70953.14756.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70953.14756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70953contigH-elongata_contig70953:2305..2682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size348
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931108.576317-UTR-H-elongata_contig70953:2304..23341622931108.576317-UTR-H-elongata_contig70953:2304..2334Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70953 2305..2334 +
1691679701.6143184-UTR-H-elongata_contig70953:2304..23341691679701.6143184-UTR-H-elongata_contig70953:2304..2334Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70953 2305..2334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931108.5893853-CDS-H-elongata_contig70953:2334..26821622931108.5893853-CDS-H-elongata_contig70953:2334..2682Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70953 2335..2682 +
1691679701.623053-CDS-H-elongata_contig70953:2334..26821691679701.623053-CDS-H-elongata_contig70953:2334..2682Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70953 2335..2682 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70953.14756.1prot_H-elongata_contig70953.14756.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70953 2335..2682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70953.14756.1

>prot_H-elongata_contig70953.14756.1 ID=prot_H-elongata_contig70953.14756.1|Name=mRNA_H-elongata_contig70953.14756.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
MPGISERIAAHLSKTKNHHVALCTSSTPEYIAAGKKFLEACAKRAEASRK
RTRETGLVMQHQTVLRLQNDGVGKEAVDNAFLRFLVDTGQSFDVGKTVYF
TDIMRAAKAYPGWGA*
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mRNA from alignment at H-elongata_contig70953:2305..2682+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70953.14756.1 ID=mRNA_H-elongata_contig70953.14756.1|Name=mRNA_H-elongata_contig70953.14756.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=378bp|location=Sequence derived from alignment at H-elongata_contig70953:2305..2682+ (Himanthalia elongata Himel1 dioecious)
CGAGTCAAGTGCAAGCAGTGCTCGAAAGTGATGCCGGGTATCAGCGAAAG
GATCGCCGCTCACTTGAGTAAAACGAAGAATCACCACGTGGCGCTGTGCA
CCAGCTCGACACCTGAGTATATCGCGGCGGGAAAGAAGTTTCTCGAAGCG
TGCGCGAAGCGGGCCGAGGCGAGCCGCAAACGCACGCGAGAGACGGGGTT
AGTGATGCAGCACCAAACCGTTCTTCGGCTGCAAAACGATGGTGTGGGTA
AGGAGGCTGTGGACAACGCTTTTCTGCGCTTTTTGGTCGACACCGGCCAG
TCCTTTGATGTGGGCAAGACCGTGTACTTCACGGACATTATGAGAGCCGC
CAAAGCGTATCCGGGGTGGGGAGCCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig70953:2305..2682+

>mRNA_H-elongata_contig70953.14756.1 ID=mRNA_H-elongata_contig70953.14756.1|Name=mRNA_H-elongata_contig70953.14756.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig70953:2305..2682+ (Himanthalia elongata Himel1 dioecious)
ATGCCGGGTATCAGCGAAAGGATCGCCGCTCACTTGAGTAAAACGAAGAA
TCACCACGTGGCGCTGTGCACCAGCTCGACACCTGAGTATATCGCGGCGG
GAAAGAAGTTTCTCGAAGCGTGCGCGAAGCGGGCCGAGGCGAGCCGCAAA
CGCACGCGAGAGACGGGGTTAGTGATGCAGCACCAAACCGTTCTTCGGCT
GCAAAACGATGGTGTGGGTAAGGAGGCTGTGGACAACGCTTTTCTGCGCT
TTTTGGTCGACACCGGCCAGTCCTTTGATGTGGGCAAGACCGTGTACTTC
ACGGACATTATGAGAGCCGCCAAAGCGTATCCGGGGTGGGGAGCCTAGAT
GCCGGGTATCAGCGAAAGGATCGCCGCTCACTTGAGTAAAACGAAGAATC
ACCACGTGGCGCTGTGCACCAGCTCGACACCTGAGTATATCGCGGCGGGA
AAGAAGTTTCTCGAAGCGTGCGCGAAGCGGGCCGAGGCGAGCCGCAAACG
CACGCGAGAGACGGGGTTAGTGATGCAGCACCAAACCGTTCTTCGGCTGC
AAAACGATGGTGTGGGTAAGGAGGCTGTGGACAACGCTTTTCTGCGCTTT
TTGGTCGACACCGGCCAGTCCTTTGATGTGGGCAAGACCGTGTACTTCAC
GGACATTATGAGAGCCGCCAAAGCGTATCCGGGGTGGGGAGCCTAG
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