mRNA_H-elongata_contig70674.14731.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70674.14731.1
Unique NamemRNA_H-elongata_contig70674.14731.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70674.14731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70674contigH-elongata_contig70674:170..2305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-17_001930.1
Hectar predicted targeting categoryother localisation
Exons4
Model size305
Cds size303
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70674.14731.1prot_H-elongata_contig70674.14731.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70674 170..2305 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931105.8374217-CDS-H-elongata_contig70674:169..2381622931105.8374217-CDS-H-elongata_contig70674:169..238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70674 170..238 -
1691679700.436238-CDS-H-elongata_contig70674:169..2381691679700.436238-CDS-H-elongata_contig70674:169..238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70674 170..238 -
1622931105.8602476-CDS-H-elongata_contig70674:658..7401622931105.8602476-CDS-H-elongata_contig70674:658..740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70674 659..740 -
1691679700.4474487-CDS-H-elongata_contig70674:658..7401691679700.4474487-CDS-H-elongata_contig70674:658..740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70674 659..740 -
1622931105.8758833-CDS-H-elongata_contig70674:1510..16381622931105.8758833-CDS-H-elongata_contig70674:1510..1638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70674 1511..1638 -
1691679700.4578874-CDS-H-elongata_contig70674:1510..16381691679700.4578874-CDS-H-elongata_contig70674:1510..1638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70674 1511..1638 -
1622931105.8911176-CDS-H-elongata_contig70674:2281..23051622931105.8911176-CDS-H-elongata_contig70674:2281..2305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70674 2282..2305 -
1691679700.4686692-CDS-H-elongata_contig70674:2281..23051691679700.4686692-CDS-H-elongata_contig70674:2281..2305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70674 2282..2305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70674.14731.1

>prot_H-elongata_contig70674.14731.1 ID=prot_H-elongata_contig70674.14731.1|Name=mRNA_H-elongata_contig70674.14731.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
TRQQHHGQLGNGQCLNMMVQAGATVAQLREYIDSTAGFKVTAGPLKRLLY
RGMNLHDDQRLNECGIPTESQLLLIDAEENRFKDGKIKLPGESKPEIKPR
D
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mRNA from alignment at H-elongata_contig70674:170..2305-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70674.14731.1 ID=mRNA_H-elongata_contig70674.14731.1|Name=mRNA_H-elongata_contig70674.14731.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2136bp|location=Sequence derived from alignment at H-elongata_contig70674:170..2305- (Himanthalia elongata Himel1 dioecious)
ACTAGGCAGCAACACCACGGTCAGGCGAGAGACACACGGTGGCGAAGAAG
GAGCGCGCAAGTATTTCAGAAACATGTAATGAATCACAATAATGCAAAGG
TTTGCACGCTCTTCTCTACCCTGGTGCATGACGCGACGCATTCGAGGCCT
TCCATGCCCAGGGACTCTTCGCGGAAGCCGTGCGTGCGAAATTGTTTATA
ATCTTACAACCGTGTATGCACACCATAAACGCAGCATCGTCCCTGCTCCC
ACGCACCTTCTCACAATCGCCAACATGTAGCACACCATTCTCTCGCCGTG
TACCTTCATGAGCCCCAACAACTCTGAATGAATATTCGCCGTCTTTTGGC
CCCATTTTTTGCGAATAAAGCTGCAATCCCGCCGGAGCAGAGTACGACCA
GAGCAACTCCAAAGGAGAGAACTCTGAGTCCCCATCACAGTTGCGACTTT
TCGTGCAGGTCAGGTGAAATGTCGTGCCCATATCACAACGAACACTTGTT
TGTTCCGGCATGAGGGGAGAGGGGCGTGACCACCACGACAAGTGTTTCAC
CGCGGCAACATTATACATACCACAGCAGCACTCACTGCAGCTCTCTATAG
CTGACTGCATTTCAGACAATTGCTACCCACCGTCACGTGGTGGCGGTCTT
TCTCCTCCTTCCCGCAGTTGGGCAACGGTCAGTGTCTAAACATGATGGTG
CAGGCAGGGGCGACGGTGGCGCAGCTACGCGAGTACATCGATTCCACCGC
GGGATTCAAGGTCACAGCGGGACCTCTAAAACGCCTCCTTTACAGGCGAG
ATATCGACACGCCACCGAGACGAGCCGGTAAGGTTCCAACCGAAAAAGGA
GAAGTCGACCCCAAGCCCCGCGAGGCGTCCGAGGCATTTTGTTTTTTTCT
ATATTTTTTTTCATTAAAGAACGTCGTTTATTTGAAGCCCCGACAGTTTA
GCGTAAAAGCAGAGCATCTTTGGAGCGCTTCTCAACGATGTCGAAATTAC
CCTCGCACCGTGCATCATGCCATTATAAAGCACGCTTATTTCTGGCGCAT
ATATCCGCGCGAATGTCGTCTCTGCGCAGATACTGCCGGGGTATGCATTG
AGCATTTAAAGTATTCATTCCCACCAACGTTCTATACACCAACCGGCAGC
ATCCTTGGAGCGCTTCTCCACGATACCGAAATTACTGTCGTGCCGTGCAT
CATGCCATGATAAAGCACGCTTCTTTCTGACCCATATACGCGCGAGAACG
CTGTCTCTGCGCAGATACTGACGGGCGGTTGCACGGAGCATTTTAAGCCC
GGGGTATTCATTCCCACCGACTTTCTACACACAAACCGACAGTCCCGAGA
TTTTCGGCGAACGCCTGCCAAATTCCCGCGAGTGGGTTTGGAGGTTTCGG
CCTGTGACTTTCGTCTAAAGATTTGGGGTGTAGAGACCACAAATCTGCAC
AATAATCTGGCCATCTGTATGTTAGAGGTTGAGACTACGACGAGGACGCA
GCTGTTTATTCATCACAGTCGCGGGTTTCTCCGTTCTCCCGATCTCTTTC
ATCATGTGCGCACAGGGGAATGAACCTGCACGATGACCAGAGGCTTAACG
AGTGCGGAATACCTACGGAGAGTCAGCTGCTGCTGATCGACGCCGAGGCA
AGAACCTTGGAGTAAACAACGCGGGGGCATGCGTGTACTGAGGAAGGAGA
AATCGTAGCTGTGAAAACATCGCTGCGGAACTCTTCTGAGGACCTCCCCC
CACAAACAATTAATAAAGCACACACACACATACACACGTAGGTACGCTAC
ATTTGCCTGTACAAGCTCTCTCCATATCTATCTTGGAATCCGACGGTCAT
AATATCCTGAAGAAAGCGAATCCGTTATGAGGCTAAACGGTGGTCCAGAA
CCGGTCGACTTTGTCTTGAATATCGTGCAACAGTTGTACTTCGACTTCGA
CCAACACCAGGAAGAGATACTTCGGCTTCGCGAAAACGCATGGCATCGCC
CATCCCGCGCAATCATACGTGTATGTATAAGTTTGTAATTACTGGCATCA
ATTTTGTCATACCTCAGGAAAACCGCTTTAAAGACGGCAAAATTAAACTG
CCAGGAGAAAGCAAGCCCGAAATCAAACCACGTGAC
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Coding sequence (CDS) from alignment at H-elongata_contig70674:170..2305-

>mRNA_H-elongata_contig70674.14731.1 ID=mRNA_H-elongata_contig70674.14731.1|Name=mRNA_H-elongata_contig70674.14731.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig70674:170..2305- (Himanthalia elongata Himel1 dioecious)
ACTAGGCAGCAACACCACGGTCAGACTAGGCAGCAACACCACGGTCAGTT
GGGCAACGGTCAGTGTCTAAACATGATGGTGCAGGCAGGGGCGACGGTGG
CGCAGCTACGCGAGTACATCGATTCCACCGCGGGATTCAAGGTCACAGCG
GGACCTCTAAAACGCCTCCTTTACAGTTGGGCAACGGTCAGTGTCTAAAC
ATGATGGTGCAGGCAGGGGCGACGGTGGCGCAGCTACGCGAGTACATCGA
TTCCACCGCGGGATTCAAGGTCACAGCGGGACCTCTAAAACGCCTCCTTT
ACAGGGGAATGAACCTGCACGATGACCAGAGGCTTAACGAGTGCGGAATA
CCTACGGAGAGTCAGCTGCTGCTGATCGACGCCGAGGGGAATGAACCTGC
ACGATGACCAGAGGCTTAACGAGTGCGGAATACCTACGGAGAGTCAGCTG
CTGCTGATCGACGCCGAGGAAAACCGCTTTAAAGACGGCAAAATTAAACT
GCCAGGAGAAAGCAAGCCCGAAATCAAACCACGTGACGAAAACCGCTTTA
AAGACGGCAAAATTAAACTGCCAGGAGAAAGCAAGCCCGAAATCAAACCA
CGTGAC
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