mRNA_H-elongata_contig70450.14701.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70450.14701.1
Unique NamemRNA_H-elongata_contig70450.14701.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig70450.14701.1 vs. uniprot
Match: D8LIC7_ECTSI (Intraflagellar transport protein 80 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIC7_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.300e-45
Identity = 81/106 (76.42%), Postives = 99/106 (93.40%), Query Frame = 1 
Query:    1 QMDKLEFVQHVQRVASEEGRHAELALYRRCPEEAETILLQASPPLVYRAIKLNMRLFRWSRALDLAVKYKTHVDTLLGYRQQYLDASSKKETDKRFLKLASEVMIE 318
            ++DKLEFVQHV +V+SEEGR+AELALYRRCPEEAE+ILLQASPPL+YRAIKLN+RLFRWSRAL+LAV++KTHVDT+LGYRQ +L +S K+ETDKRFL+  SEV ++
Sbjct:  643 EVDKLEFVQHVLKVSSEEGRNAELALYRRCPEEAESILLQASPPLIYRAIKLNIRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEVAVD 748
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BLAST of mRNA_H-elongata_contig70450.14701.1 vs. uniprot
Match: A0A7S2CV51_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CV51_9STRA)

HSP 1 Score: 153 bits (386), Expect = 4.730e-44
Identity = 74/106 (69.81%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 QMDKLEFVQHVQRVASEEGRHAELALYRRCPEEAETILLQASPPLVYRAIKLNMRLFRWSRALDLAVKYKTHVDTLLGYRQQYLDASSKKETDKRFLKLASEVMIE 318
            ++DKLEF+ H++ + SEEGR+AELALYRRCP+EAE ILLQA PPL YRAIK+N+RLFRW RAL+LAVK ++HVDT+LGYRQ+YLD   KKETDKRFL+ A  V I+
Sbjct:  147 EVDKLEFILHIKNIPSEEGRNAELALYRRCPDEAEGILLQARPPLTYRAIKMNIRLFRWGRALELAVKSRSHVDTVLGYRQKYLDQFGKKETDKRFLQYAESVEID 252
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BLAST of mRNA_H-elongata_contig70450.14701.1 vs. uniprot
Match: A0A7S2G6X5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G6X5_9STRA)

HSP 1 Score: 153 bits (386), Expect = 4.560e-41
Identity = 74/106 (69.81%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 QMDKLEFVQHVQRVASEEGRHAELALYRRCPEEAETILLQASPPLVYRAIKLNMRLFRWSRALDLAVKYKTHVDTLLGYRQQYLDASSKKETDKRFLKLASEVMIE 318
            ++DKLEF+ H++ + SEEGR+AELALYRRCP+EAE ILLQA PPL YRAIK+N+RLFRW RAL+LAVK ++HVDT+LGYRQ+YLD   KKETDKRFL+ A  V I+
Sbjct:  642 EVDKLEFILHIKNIPSEEGRNAELALYRRCPDEAEGILLQARPPLTYRAIKMNIRLFRWGRALELAVKSRSHVDTVLGYRQKYLDQFGKKETDKRFLQYAESVEID 747
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BLAST of mRNA_H-elongata_contig70450.14701.1 vs. uniprot
Match: A0A6U1NNZ0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NNZ0_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.930e-38
Identity = 63/106 (59.43%), Postives = 92/106 (86.79%), Query Frame = 1 
Query:    1 QMDKLEFVQHVQRVASEEGRHAELALYRRCPEEAETILLQASPPLVYRAIKLNMRLFRWSRALDLAVKYKTHVDTLLGYRQQYLDASSKKETDKRFLKLASEVMIE 318
            ++DKL+++ +++ + S+EGR+AE+ LY+RCP+EAE ILLQASPPL YRAIKLN+RL+RW+RAL+LAVKY++HVDT+LGYRQ++L+   K+ETD +FL+   +V I+
Sbjct:  182 EVDKLQYILYIKDIPSQEGRNAEMMLYKRCPDEAENILLQASPPLTYRAIKLNIRLYRWNRALELAVKYRSHVDTVLGYRQRFLETFKKQETDAQFLQYKDKVTID 287
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BLAST of mRNA_H-elongata_contig70450.14701.1 vs. uniprot
Match: A0A835ZN10_9STRA (Intraflagellar transport protein 80 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZN10_9STRA)

HSP 1 Score: 144 bits (362), Expect = 8.830e-38
Identity = 71/105 (67.62%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:    4 MDKLEFVQHVQRVASEEGRHAELALYRRCPEEAETILLQASPPLVYRAIKLNMRLFRWSRALDLAVKYKTHVDTLLGYRQQYLDASSKKETDKRFLKLASEVMIE 318
            +DKLE++  ++ V SEEGR AELAL RRCPEEAE ILLQA+PPLV+RAIKLN+RLFRWSRAL+LAV+Y++HVDT+LGYRQ++L A  K+ETD RFL+ A +V ++
Sbjct:  640 VDKLEYILTIRAVPSEEGRSAELALCRRCPEEAEKILLQATPPLVHRAIKLNLRLFRWSRALELAVQYRSHVDTVLGYRQRHLAAFKKQETDARFLQYAEQVTVD 744
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BLAST of mRNA_H-elongata_contig70450.14701.1 vs. uniprot
Match: A0A7S2WFK5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFK5_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.370e-35
Identity = 65/98 (66.33%), Postives = 85/98 (86.73%), Query Frame = 1 
Query:    7 DKLEFVQHVQRVASEEGRHAELALYRRCPEEAETILLQASPPLVYRAIKLNMRLFRWSRALDLAVKYKTHVDTLLGYRQQYLDASSKKETDKRFLKLA 300
            DKLEF+ H++++ SEE R+AELALYRRCP+EAE ILLQA PPL+YRA+ LN+RLFRW RAL++AVK K HVDT+LG+RQ++L  ++K ET+KRFL+ A
Sbjct:  651 DKLEFIVHLKKLPSEETRNAELALYRRCPDEAEAILLQARPPLIYRAVDLNIRLFRWGRALEIAVKNKRHVDTVLGFRQKFLKQANKTETEKRFLQYA 748
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BLAST of mRNA_H-elongata_contig70450.14701.1 vs. uniprot
Match: D8LRF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF2_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.350e-34
Identity = 71/114 (62.28%), Postives = 88/114 (77.19%), Query Frame = 1 
Query:    1 QMDKLEFVQHVQRVASEEGRHAELALYRRCPEEAETILLQASPPLVYRAIKL--------NMRLFRWSRALDLAVKYKTHVDTLLGYRQQYLDASSKKETDKRFLKLASEVMIE 318
            ++DKLE VQHV +V+SEEGR+AELALYRRCPEEAE+ILLQASPP                 +RLFRWSRAL+LAV++KTHVDT+LGYRQ +L +S K+ETDKRF +  SEV ++
Sbjct:  296 EVDKLECVQHVLKVSSEEGRNAELALYRRCPEEAESILLQASPPPSSXXXXXXTPSPFLGQIRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFFQSNSEVAVD 409
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BLAST of mRNA_H-elongata_contig70450.14701.1 vs. uniprot
Match: A0A7S3USB3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USB3_HETAK)

HSP 1 Score: 124 bits (312), Expect = 3.320e-34
Identity = 63/106 (59.43%), Postives = 84/106 (79.25%), Query Frame = 1 
Query:    1 QMDKLEFVQHVQRVASEEGRHAELALYRRCPEEAETILLQASPPLVYRAIKLNMRLFRWSRALDLAVKYKTHVDTLLGYRQQYLDASSKKETDKRFLKLASEVMIE 318
            ++ KL++V H++ V S EG++AEL LYRR P++AE ILLQA PPLVYRAIK+N+RLFRW RAL+LAVK+K+HVDT+LGYRQ++L A    E    F + A+EV I+
Sbjct:   33 EVHKLQYVLHIKHVPSVEGQNAELMLYRRQPDQAEAILLQAKPPLVYRAIKMNVRLFRWHRALELAVKHKSHVDTVLGYRQRHLQALGAAEDLPLFQQYAAEVQID 138
[Close]
BLAST of mRNA_H-elongata_contig70450.14701.1 vs. uniprot
Match: A0A7S1C6H3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6H3_9STRA)

HSP 1 Score: 133 bits (334), Expect = 5.740e-34
Identity = 63/106 (59.43%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 QMDKLEFVQHVQRVASEEGRHAELALYRRCPEEAETILLQASPPLVYRAIKLNMRLFRWSRALDLAVKYKTHVDTLLGYRQQYLDASSKKETDKRFLKLASEVMIE 318
            ++DK+ ++ +++ + S EGR AEL LYRR PEEAE +LLQA+PPLVYRAIK+N+RLFRW RAL+LAV+YKTHVDT+L YRQ+YL ++ + ET +RFL+ +++V I+
Sbjct:  631 EVDKVHYISYIKDIPSAEGRAAELMLYRRLPEEAEQVLLQAAPPLVYRAIKMNIRLFRWVRALELAVQYKTHVDTVLAYRQRYLASAKRAETIERFLQYSAQVTID 736
[Close]
BLAST of mRNA_H-elongata_contig70450.14701.1 vs. uniprot
Match: A0A7S3M0Q2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M0Q2_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.090e-33
Identity = 62/100 (62.00%), Postives = 84/100 (84.00%), Query Frame = 1 
Query:   10 KLEFVQHVQRVASEEGRHAELALYRRCPEEAETILLQASPPLVYRAIKLNMRLFRWSRALDLAVKYKTHVDTLLGYRQQYLDASSKKETDKRFLKLASEV 309
            K+E++Q+++ + SEEG+ AELALYRR P+EAE ILLQASPPL YRAIKLN+ LFRW RALDLAVK+K H+DT+L YRQ+YL +  ++ET+++FL+   +V
Sbjct:  644 KVEYIQYIKAIPSEEGKQAELALYRRQPDEAERILLQASPPLAYRAIKLNLNLFRWQRALDLAVKHKIHIDTVLAYRQKYLQSFEREETNQKFLQYFKQV 743
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70450.14701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIC7_ECTSI1.300e-4576.42Intraflagellar transport protein 80 n=2 Tax=Ectoca... [more]
A0A7S2CV51_9STRA4.730e-4469.81Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2G6X5_9STRA4.560e-4169.81Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6U1NNZ0_9STRA1.930e-3859.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZN10_9STRA8.830e-3867.62Intraflagellar transport protein 80 n=1 Tax=Tribon... [more]
A0A7S2WFK5_9STRA1.370e-3566.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D8LRF2_ECTSI1.350e-3462.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3USB3_HETAK3.320e-3459.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1C6H3_9STRA5.740e-3459.43Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S3M0Q2_9STRA1.090e-3362.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70450contigH-elongata_contig70450:267..836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue3.2e-39
Seed eggNOG ortholog2880.D8LIC7
Preferred nameIFT80
KEGG koko:K19678
GOsGO:0002119,GO:0002164,GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006935,GO:0006996,GO:0007275,GO:0008150,GO:0009593,GO:0009605,GO:0009791,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010646,GO:0010648,GO:0015630,GO:0016043,GO:0017015,GO:0022607,GO:0023051,GO:0023057,GO:0030030,GO:0030031,GO:0030512,GO:0030990,GO:0030992,GO:0032501,GO:0032502,GO:0032991,GO:0036064,GO:0040008,GO:0040011,GO:0040012,GO:0040014,GO:0040017,GO:0040018,GO:0040024,GO:0042221,GO:0042330,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043327,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045927,GO:0048518,GO:0048519,GO:0048520,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048639,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051606,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090325,GO:0090326,GO:0097730,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1903844,GO:1903845,GO:1905515
EggNOG free text desc.cilium assembly
EggNOG OGsCOG2319@1,KOG1524@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70450.14701.1prot_H-elongata_contig70450.14701.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70450 270..836 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931102.275072-UTR-H-elongata_contig70450:266..2691622931102.275072-UTR-H-elongata_contig70450:266..269Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70450 267..269 +
1691679698.84308-UTR-H-elongata_contig70450:266..2691691679698.84308-UTR-H-elongata_contig70450:266..269Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70450 267..269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931102.287162-CDS-H-elongata_contig70450:269..4251622931102.287162-CDS-H-elongata_contig70450:269..425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70450 270..425 +
1691679698.8546486-CDS-H-elongata_contig70450:269..4251691679698.8546486-CDS-H-elongata_contig70450:269..425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70450 270..425 +
1622931102.2984126-CDS-H-elongata_contig70450:677..8361622931102.2984126-CDS-H-elongata_contig70450:677..836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70450 678..836 +
1691679698.864275-CDS-H-elongata_contig70450:677..8361691679698.864275-CDS-H-elongata_contig70450:677..836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70450 678..836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70450.14701.1

>prot_H-elongata_contig70450.14701.1 ID=prot_H-elongata_contig70450.14701.1|Name=mRNA_H-elongata_contig70450.14701.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MDKLEFVQHVQRVASEEGRHAELALYRRCPEEAETILLQASPPLVYRAIK
LNMRLFRWSRALDLAVKYKTHVDTLLGYRQQYLDASSKKETDKRFLKLAS
EVMIE
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mRNA from alignment at H-elongata_contig70450:267..836+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70450.14701.1 ID=mRNA_H-elongata_contig70450.14701.1|Name=mRNA_H-elongata_contig70450.14701.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=570bp|location=Sequence derived from alignment at H-elongata_contig70450:267..836+ (Himanthalia elongata Himel1 dioecious)
CAGATGGATAAGCTCGAGTTTGTCCAGCACGTGCAGCGGGTAGCGAGCGA
GGAAGGTCGCCACGCTGAGCTGGCCTTGTACCGCCGATGCCCCGAGGAGG
CGGAGACCATCCTGCTACAAGCATCCCCACCCCTTGTCTACCGTGCCATC
AAGCTCAACGTGAGGGCTGTCTTTCGCCGGACGGTGGTCGCCTGCTAGAC
GTAATGAGCCACACGTAGAGGGGTCCCATCTGCCCTGTTCTAGGCTGGTA
TCAACGCCGTATGTGTCATGGATTACGTTTAGCACATCGTATAGGTATCC
ATGCGGACTCATAGCGAAGCGCATTCCTTGTGTGCCCCCCCCCATGCCCG
CTGATGTCACCATCACGTCACCGACTGCATTCGACCTAACCCTCCTTTCT
GAACACCACAGATGCGGTTGTTCCGGTGGTCTCGGGCGTTAGATCTAGCC
GTCAAGTACAAGACCCACGTAGACACTCTTCTAGGCTACCGGCAGCAGTA
CCTCGACGCATCCTCCAAGAAAGAAACGGACAAGCGCTTCTTAAAGCTTG
CCTCCGAGGTGATGATCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig70450:267..836+

>mRNA_H-elongata_contig70450.14701.1 ID=mRNA_H-elongata_contig70450.14701.1|Name=mRNA_H-elongata_contig70450.14701.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig70450:267..836+ (Himanthalia elongata Himel1 dioecious)
ATGGATAAGCTCGAGTTTGTCCAGCACGTGCAGCGGGTAGCGAGCGAGGA
AGGTCGCCACGCTGAGCTGGCCTTGTACCGCCGATGCCCCGAGGAGGCGG
AGACCATCCTGCTACAAGCATCCCCACCCCTTGTCTACCGTGCCATCAAG
CTCAACATGGATAAGCTCGAGTTTGTCCAGCACGTGCAGCGGGTAGCGAG
CGAGGAAGGTCGCCACGCTGAGCTGGCCTTGTACCGCCGATGCCCCGAGG
AGGCGGAGACCATCCTGCTACAAGCATCCCCACCCCTTGTCTACCGTGCC
ATCAAGCTCAACATGCGGTTGTTCCGGTGGTCTCGGGCGTTAGATCTAGC
CGTCAAGTACAAGACCCACGTAGACACTCTTCTAGGCTACCGGCAGCAGT
ACCTCGACGCATCCTCCAAGAAAGAAACGGACAAGCGCTTCTTAAAGCTT
GCCTCCGAGGTGATGATCGAGATGCGGTTGTTCCGGTGGTCTCGGGCGTT
AGATCTAGCCGTCAAGTACAAGACCCACGTAGACACTCTTCTAGGCTACC
GGCAGCAGTACCTCGACGCATCCTCCAAGAAAGAAACGGACAAGCGCTTC
TTAAAGCTTGCCTCCGAGGTGATGATCGAG
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