mRNA_H-elongata_contig70244.14683.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70244.14683.1
Unique NamemRNA_H-elongata_contig70244.14683.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig70244.14683.1 vs. uniprot
Match: A0A6H5KFH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFH7_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.230e-32
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 RTPRVHLFTDGCAKQYKGKRNFRFISDSVEECGFFVSHHFAATSHFKGCHDGIGGVSKNA 180
            RTPR+H+FTDGC KQYKG+RNFRF++DSV + GFF+ HHFAATSHFKGCHDGIGGV+KNA
Sbjct:   22 RTPRIHMFTDGCGKQYKGRRNFRFLADSVRQIGFFIDHHFAATSHFKGCHDGIGGVAKNA 81
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BLAST of mRNA_H-elongata_contig70244.14683.1 vs. uniprot
Match: A0A6H5JYM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYM9_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 6.230e-30
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 RTPRVHLFTDGCAKQYKGKRNFRFISDSVEECGFFVSHHFAATSHFKGCHDGIGGVSKNA 180
            RTPR+H+FTDGC KQYKG+RNFRF++DSV + GFF+ HHFAATSHFK CHDGIGGV+KNA
Sbjct:   66 RTPRIHMFTDGCGKQYKGRRNFRFLTDSVRQIGFFIDHHFAATSHFKDCHDGIGGVAKNA 125
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BLAST of mRNA_H-elongata_contig70244.14683.1 vs. uniprot
Match: A0A6H5KI10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI10_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 5.450e-29
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 RTPRVHLFTDGCAKQYKGKRNFRFISDSVEECGFFVSHHFAATSHFKGCHDGIGGVSKNA 180
            RTPR+H+FTDGC KQYKG+RNFRF++DSV + GFF+ HHFAATSHFKGCHDGIGGV+KNA
Sbjct:  616 RTPRLHMFTDGCGKQYKGRRNFRFLADSVRQIGFFIDHHFAATSHFKGCHDGIGGVAKNA 675
[Close]
BLAST of mRNA_H-elongata_contig70244.14683.1 vs. uniprot
Match: A0A6H5L7F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F4_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.230e-28
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:    1 RTPRVHLFTDGCAKQYKGKRNFRFISDSVEECGFFVSHHFAATSHFKGCHDGIGGVSKNA 180
            R PR+H+FTDGC KQYKG+RNFRF++DSV + GFF+ HHFAATSHFK CHDGIGGV+KNA
Sbjct:  170 RKPRIHMFTDGCGKQYKGRRNFRFLADSVRQIGFFIDHHFAATSHFKDCHDGIGGVAKNA 229
[Close]
BLAST of mRNA_H-elongata_contig70244.14683.1 vs. uniprot
Match: A0A6H5JQG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG9_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.250e-28
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 RTPRVHLFTDGCAKQYKGKRNFRFISDSVEECGFFVSHHFAATSHFKGCHDGIGGVSKNA 180
            RTPR+H+FTDGC KQYKG+R+FRF++DSV + G F+ HHFAATSHFKGCHDGIGGV+KNA
Sbjct:  138 RTPRIHIFTDGCGKQYKGRRSFRFLADSVRQIGSFIDHHFAATSHFKGCHDGIGGVAKNA 197
[Close]
BLAST of mRNA_H-elongata_contig70244.14683.1 vs. uniprot
Match: A0A6H5LEY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEY9_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.370e-28
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 RTPRVHLFTDGCAKQYKGKRNFRFISDSVEECGFFVSHHFAATSHFKGCHDGIGGVSKNA 180
            RTPR+H+FTDGC KQYKG+RNFRF++DSV + GFF+ HHFAA SHFKGCHDGIGGV+KNA
Sbjct:  644 RTPRIHMFTDGCGKQYKGRRNFRFLADSVRQIGFFIDHHFAAASHFKGCHDGIGGVAKNA 703
[Close]
BLAST of mRNA_H-elongata_contig70244.14683.1 vs. uniprot
Match: A0A6H5KAT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT3_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.460e-28
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 RTPRVHLFTDGCAKQYKGKRNFRFISDSVEECGFFVSHHFAATSHFKGCHDGIGGVSKNA 180
            RTPR+H+FT GC KQYKG+RNFRF++DSV + GFF+ HHFAATSHFKGCHDGIGGV+KNA
Sbjct:  279 RTPRIHMFTAGCGKQYKGRRNFRFLADSVRQIGFFMDHHFAATSHFKGCHDGIGGVAKNA 338
[Close]
BLAST of mRNA_H-elongata_contig70244.14683.1 vs. uniprot
Match: A0A6H5JQK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQK2_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.440e-28
Identity = 46/60 (76.67%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 RTPRVHLFTDGCAKQYKGKRNFRFISDSVEECGFFVSHHFAATSHFKGCHDGIGGVSKNA 180
            R+PR+H+F+DGC KQYKG+RNFRF++DSV + GFF+ HHFAATSHFKGCHDGIGGV+KNA
Sbjct:  424 RSPRIHIFSDGCGKQYKGRRNFRFLADSVRQLGFFIDHHFAATSHFKGCHDGIGGVAKNA 483
[Close]
BLAST of mRNA_H-elongata_contig70244.14683.1 vs. uniprot
Match: A0A6H5JTJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ1_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 4.470e-28
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 RTPRVHLFTDGCAKQYKGKRNFRFISDSVEECGFFVSHHFAATSHFKGCHDGIGGVSKNA 180
            R PR+H+FTDGCAKQYKG+RNFRF++DSV + GF V HHFAATSHFKGCHDGIGGV+KNA
Sbjct:  234 RIPRMHMFTDGCAKQYKGRRNFRFLADSVRQLGFIVEHHFAATSHFKGCHDGIGGVAKNA 293
[Close]
BLAST of mRNA_H-elongata_contig70244.14683.1 vs. uniprot
Match: A0A6H5KDZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ7_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 4.660e-28
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 RTPRVHLFTDGCAKQYKGKRNFRFISDSVEECGFFVSHHFAATSHFKGCHDGIGGVSKNA 180
            RTPR+H+FTDGC KQ KG+RNFRF++DSV + GFF+ HHFAATSHFKGCHDGIGGV+KNA
Sbjct:  472 RTPRIHIFTDGCGKQNKGRRNFRFLADSVRQLGFFIDHHFAATSHFKGCHDGIGGVAKNA 531
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70244.14683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFH7_9PHAE2.230e-3280.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYM9_9PHAE6.230e-3078.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI10_9PHAE5.450e-2980.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F4_9PHAE1.230e-2876.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQG9_9PHAE1.250e-2876.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LEY9_9PHAE1.370e-2878.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAT3_9PHAE1.460e-2878.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQK2_9PHAE3.440e-2876.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTJ1_9PHAE4.470e-2880.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDZ7_9PHAE4.660e-2878.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70244contigH-elongata_contig70244:2443..2661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-25_002990.2
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931100.7921767-CDS-H-elongata_contig70244:2442..26611622931100.7921767-CDS-H-elongata_contig70244:2442..2661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70244 2443..2661 -
1691679698.293845-CDS-H-elongata_contig70244:2442..26611691679698.293845-CDS-H-elongata_contig70244:2442..2661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70244 2443..2661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70244.14683.1prot_H-elongata_contig70244.14683.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70244 2443..2661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70244.14683.1

>prot_H-elongata_contig70244.14683.1 ID=prot_H-elongata_contig70244.14683.1|Name=mRNA_H-elongata_contig70244.14683.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
RTPRVHLFTDGCAKQYKGKRNFRFISDSVEECGFFVSHHFAATSHFKGCH
DGIGGVSKNATSNAVIIVIETE*
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mRNA from alignment at H-elongata_contig70244:2443..2661-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70244.14683.1 ID=mRNA_H-elongata_contig70244.14683.1|Name=mRNA_H-elongata_contig70244.14683.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig70244:2443..2661- (Himanthalia elongata Himel1 dioecious)
CGTACACCCCGGGTACACTTGTTTACCGACGGTTGTGCTAAGCAGTACAA
GGGGAAGCGCAACTTCCGGTTTATTTCGGACAGTGTGGAGGAGTGTGGTT
TCTTCGTCAGCCATCACTTCGCAGCTACTTCCCATTTCAAAGGGTGTCAC
GATGGCATTGGTGGTGTGTCGAAAAACGCCACGAGCAACGCAGTCATTAT
CGTTATCGAAACGGAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig70244:2443..2661-

>mRNA_H-elongata_contig70244.14683.1 ID=mRNA_H-elongata_contig70244.14683.1|Name=mRNA_H-elongata_contig70244.14683.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig70244:2443..2661- (Himanthalia elongata Himel1 dioecious)
CGTACACCCCGGGTACACTTGTTTACCGACGGTTGTGCTAAGCAGTACAA
GGGGAAGCGCAACTTCCGGTTTATTTCGGACAGTGTGGAGGAGTGTGGTT
TCTTCGTCAGCCATCACTTCGCAGCTACTTCCCATTTCAAAGGGTGTCAC
GATGGCATTGGTGGTGTGTCGAAAAACGCCACGAGCAACGCAGTCATTAT
CGTTATCGAAACGGAATAGCGTACACCCCGGGTACACTTGTTTACCGACG
GTTGTGCTAAGCAGTACAAGGGGAAGCGCAACTTCCGGTTTATTTCGGAC
AGTGTGGAGGAGTGTGGTTTCTTCGTCAGCCATCACTTCGCAGCTACTTC
CCATTTCAAAGGGTGTCACGATGGCATTGGTGGTGTGTCGAAAAACGCCA
CGAGCAACGCAGTCATTATCGTTATCGAAACGGAATAG
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