mRNA_H-elongata_contig70020.14654.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70020.14654.1
Unique NamemRNA_H-elongata_contig70020.14654.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig70020.14654.1 vs. uniprot
Match: D8LC53_ECTSI (Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC53_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 2.160e-12
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 QMLQLLVSAGSDINAQNIVGDAPLHKAALNGRALSADF 114
            QML+LL+ AGS+INAQNIVGDAPLHKAALNGRALSAD+
Sbjct:   24 QMLELLLRAGSNINAQNIVGDAPLHKAALNGRALSADY 61
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BLAST of mRNA_H-elongata_contig70020.14654.1 vs. uniprot
Match: A0A6H5J6H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6H7_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.500e-12
Identity = 32/38 (84.21%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 QMLQLLVSAGSDINAQNIVGDAPLHKAALNGRALSADF 114
            +ML+LL+ AGS+INAQNIVGDAPLHKAALNGRALSAD+
Sbjct:  106 EMLELLLRAGSNINAQNIVGDAPLHKAALNGRALSADY 143
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BLAST of mRNA_H-elongata_contig70020.14654.1 vs. uniprot
Match: A0A8J9UWK9_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9UWK9_BRAAE)

HSP 1 Score: 49.7 bits (117), Expect = 1.350e-5
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    4 MLQLLVSAGSDINAQNIVGDAPLHKAALNGRALSADFLIREGANVNIR 147
            M  +LVS G+D+NAQ+I G +PL  A  N    +A+FLI +GANVN+R
Sbjct: 3978 MANVLVSNGADLNAQDINGYSPLMFAVDNNHTETAEFLINQGANVNLR 4025
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BLAST of mRNA_H-elongata_contig70020.14654.1 vs. uniprot
Match: UPI001FE04429 (ankyrin repeat domain-containing protein n=1 Tax=Nocardia concava TaxID=257281 RepID=UPI001FE04429)

HSP 1 Score: 45.4 bits (106), Expect = 5.720e-5
Identity = 21/47 (44.68%), Postives = 29/47 (61.70%), Query Frame = 1 
Query:    7 LQLLVSAGSDINAQNIVGDAPLHKAALNGRALSADFLIREGANVNIR 147
            L LL+ AG+D+N    +G  PLH A   G+  + DFLI  GA++ IR
Sbjct:   21 LSLLLKAGADVNQLGDMGQTPLHNAYTTGQTEAVDFLIANGASLEIR 67
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BLAST of mRNA_H-elongata_contig70020.14654.1 vs. uniprot
Match: A0A7S1YDE2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A7S1YDE2_9EUKA)

HSP 1 Score: 47.8 bits (112), Expect = 6.310e-5
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    4 MLQLLVSAGSDINAQNIVGDAPLHKAALNGRALSADFLIREGANVN 141
            +L LL+ AG+ ++A N +G+ PLH AA +G   +A FL+R GANV+
Sbjct:   82 LLDLLLGAGATLDADNGLGETPLHYAAFHGNPAAARFLLRLGANVH 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70020.14654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LC53_ECTSI2.160e-1286.84Ankyrin domain protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5J6H7_9PHAE5.500e-1284.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J9UWK9_BRAAE1.350e-552.08Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]
UPI001FE044295.720e-544.68ankyrin repeat domain-containing protein n=1 Tax=N... [more]
A0A7S1YDE2_9EUKA6.310e-547.83Hypothetical protein (Fragment) n=1 Tax=Sexangular... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70020contigH-elongata_contig70020:2917..3063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue3.5e-09
Seed eggNOG ortholog2880.D8LC53
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size144
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931098.2617092-CDS-H-elongata_contig70020:2916..30601622931098.2617092-CDS-H-elongata_contig70020:2916..3060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70020 2917..3060 -
1691679697.1313133-CDS-H-elongata_contig70020:2916..30601691679697.1313133-CDS-H-elongata_contig70020:2916..3060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70020 2917..3060 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931098.2828076-UTR-H-elongata_contig70020:3060..30631622931098.2828076-UTR-H-elongata_contig70020:3060..3063Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70020 3061..3063 -
1691679697.1426444-UTR-H-elongata_contig70020:3060..30631691679697.1426444-UTR-H-elongata_contig70020:3060..3063Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70020 3061..3063 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70020.14654.1prot_H-elongata_contig70020.14654.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70020 2917..3060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70020.14654.1

>prot_H-elongata_contig70020.14654.1 ID=prot_H-elongata_contig70020.14654.1|Name=mRNA_H-elongata_contig70020.14654.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
MLQLLVSAGSDINAQNIVGDAPLHKAALNGRALSADFLIREGANVNIR
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mRNA from alignment at H-elongata_contig70020:2917..3063-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70020.14654.1 ID=mRNA_H-elongata_contig70020.14654.1|Name=mRNA_H-elongata_contig70020.14654.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig70020:2917..3063- (Himanthalia elongata Himel1 dioecious)
CAGATGCTTCAGCTGCTCGTGAGCGCGGGGTCCGACATTAACGCGCAGAA
CATCGTGGGCGACGCGCCGCTTCACAAGGCTGCTCTCAACGGCCGAGCCC
TGTCCGCGGACTTCCTGATTCGTGAAGGGGCTAACGTGAACATCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig70020:2917..3063-

>mRNA_H-elongata_contig70020.14654.1 ID=mRNA_H-elongata_contig70020.14654.1|Name=mRNA_H-elongata_contig70020.14654.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig70020:2917..3063- (Himanthalia elongata Himel1 dioecious)
ATGCTTCAGCTGCTCGTGAGCGCGGGGTCCGACATTAACGCGCAGAACAT
CGTGGGCGACGCGCCGCTTCACAAGGCTGCTCTCAACGGCCGAGCCCTGT
CCGCGGACTTCCTGATTCGTGAAGGGGCTAACGTGAACATCAGGATGCTT
CAGCTGCTCGTGAGCGCGGGGTCCGACATTAACGCGCAGAACATCGTGGG
CGACGCGCCGCTTCACAAGGCTGCTCTCAACGGCCGAGCCCTGTCCGCGG
ACTTCCTGATTCGTGAAGGGGCTAACGTGAACATCAGG
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