mRNA_H-elongata_contig69861.14635.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69861.14635.1
Unique NamemRNA_H-elongata_contig69861.14635.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69861.14635.1 vs. uniprot
Match: A0A6H5J837_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J837_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.200e-36
Identity = 66/99 (66.67%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:    1 VKMEYEAPNPRIHFFTGTLTVGTRGPGAISEVEDNESGRRGSLDAPVDQSNLLLRGSRLRNTKWVLGVVSYTGKESKIAQNARSVPSKQSNLDKVRYRL 297
            +++EYEAPN RIHFFTGTLT+     G   +  +   G  GS D PVDQSNLLLRG+RLRNTKW +GVV+YTG+ESKIAQNARSVPSKQSNLDKV  ++
Sbjct:   72 MELEYEAPNARIHFFTGTLTLHDGAGGPQDDSGEGGGGGTGSRDVPVDQSNLLLRGARLRNTKWAIGVVAYTGRESKIAQNARSVPSKQSNLDKVTNKI 170
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BLAST of mRNA_H-elongata_contig69861.14635.1 vs. uniprot
Match: D8LGJ4_ECTSI (Phospholipid-transporting ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ4_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 3.190e-33
Identity = 65/99 (65.66%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    1 VKMEYEAPNPRIHFFTGTLTVGTRGPGAISEVEDNESGRRGSLDAPVDQSNLLLRGSRLRNTKWVLGVVSYTGKESKIAQNARSVPSKQSNLDKVRYRL 297
            +++EYEAPN RIHFFTGTLT+     G   +  +      GS D PVDQSNLLLRG+RLRNTKW +GVV+YTG+ESKIAQNARSVPSKQSNLDKV  ++
Sbjct:  214 MELEYEAPNARIHFFTGTLTLHGGAGGPQDDSGEGXXXGTGSRDVPVDQSNLLLRGARLRNTKWAIGVVAYTGRESKIAQNARSVPSKQSNLDKVTNKI 312
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BLAST of mRNA_H-elongata_contig69861.14635.1 vs. uniprot
Match: A0A836CHZ9_9STRA (Phospholipid-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ9_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.930e-25
Identity = 58/112 (51.79%), Postives = 75/112 (66.96%), Query Frame = 1 
Query:    1 VKMEYEAPNPRIHFFTGTLTVGTRG--PGAISEVE---DNESGRRGSL--------DAPVDQSNLLLRGSRLRNTKWVLGVVSYTGKESKIAQNARSVPSKQSNLDKVRYRL 297
            + +EYE PNPRIHFFTGTL V  RG   G ++      D+E G             + PVDQSN+L+RGS L+NT+W LG+V YTGKE+KI +NARS PSK+SN+D+V  R+
Sbjct:  310 MSIEYERPNPRIHFFTGTLRVAERGGTAGGVATPAPSVDSEGGGXXXXXXXXXXMREVPVDQSNVLMRGSSLKNTRWALGLVVYTGKETKIIKNARSAPSKRSNVDRVTNRI 421
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BLAST of mRNA_H-elongata_contig69861.14635.1 vs. uniprot
Match: W7TQX5_9STRA (Phospholipid-transporting ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQX5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.080e-17
Identity = 47/97 (48.45%), Postives = 60/97 (61.86%), Query Frame = 1 
Query:    7 MEYEAPNPRIHFFTGTLTVGTRGPGAISEVEDNESGRRGSLDAPVDQSNLLLRGSRLRNTKWVLGVVSYTGKESKIAQNARSVPSKQSNLDKVRYRL 297
            M  EAPN RIH +TGTLT+ ++GPG    V              V Q+NLLLRGSRLRNT+W LG+  YTG ++KI  N+R+ PSK S ++    RL
Sbjct:  305 MVCEAPNARIHSYTGTLTLLSKGPGERRRVA-------------VSQANLLLRGSRLRNTQWALGLAVYTGAQTKIVMNSRTAPSKLSAIEVTTNRL 388
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BLAST of mRNA_H-elongata_contig69861.14635.1 vs. uniprot
Match: W7TGI1_9STRA (Phospholipid-transporting ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGI1_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.470e-16
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    7 MEYEAPNPRIHFFTGTLTVGTRGPGAISEVEDNESGRRGSLDAPVDQSNLLLRGSRLRNTKWVLGVVSYTGKESKIAQNARSVPSKQSNLD 279
            +E E PN  IH F+G L                   + G+ + PVD+SNLLLRGS +RNTKWVLG+V YTG+++KI QN+R  PSK S ++
Sbjct:  222 VECELPNSHIHSFSGVL----------------RHEKEGNRETPVDESNLLLRGSSVRNTKWVLGLVVYTGRDTKIVQNSREAPSKLSTVE 296
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BLAST of mRNA_H-elongata_contig69861.14635.1 vs. uniprot
Match: A0A1Y2DMD0_9FUNG (Phospholipid-transporting ATPase n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2DMD0_9FUNG)

HSP 1 Score: 76.6 bits (187), Expect = 3.490e-14
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:    7 MEYEAPNPRIHFFTGTLTVGTRGPGAISEVEDNESGRRGSLDAPVDQSNLLLRGSRLRNTKWVLGVVSYTGKESKIAQNARSVPSKQSNLDKV 285
            ++ E P P +  FTG LT+ T  P +    ++      G    P+  +NLLLRGS LRNT+WV+GVV YTG ++K+   +   PSK+S ++K 
Sbjct:  265 IDAEKPTPELQRFTGVLTIPTTAPQSPKSGDEEVIYPEGEKSIPLTVNNLLLRGSILRNTEWVIGVVIYTGSDTKVILGSGKTPSKRSKIEKT 357
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BLAST of mRNA_H-elongata_contig69861.14635.1 vs. uniprot
Match: A0A7S3GHQ2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GHQ2_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 4.190e-14
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:    7 MEYEAPNPRIHFFTGTLTVGTRGPGAISEVEDNESGRRGSLDAPVDQSNLLLRGSRLRNTKWVLGVVSYTGKESKIAQNARSVPSKQSNLDKV 285
            +EYE PN +++ F G L +                   G +  P+D  N+LLRGS LRNT++V+G V +TGKESK+  N +  PSK+SN++KV
Sbjct:   71 VEYEMPNRKLYNFDGNLNLD------------------GVVKCPLDAKNILLRGSTLRNTEFVIGFVLFTGKESKLMMNTKKTPSKRSNMEKV 145
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BLAST of mRNA_H-elongata_contig69861.14635.1 vs. uniprot
Match: A0A7S3NH53_9STRA (Phospholipid-transporting ATPase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NH53_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.750e-14
Identity = 38/95 (40.00%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    1 VKMEYEAPNPRIHFFTGTLTVGTRGPGAISEVEDNESGRRGSLDAPVDQSNLLLRGSRLRNTKWVLGVVSYTGKESKIAQNARSVPSKQSNLDKV 285
            + +EYE P  RIH F GTL +         +VE + +     +  P++  N LLRGS LRNTKW+LG+V Y+G+++++ +N+R  PSK S +++V
Sbjct:  107 IDIEYEPPCGRIHTFEGTLNL---------KVEKDTTA---VIKLPLESRNFLLRGSSLRNTKWILGLVVYSGRDTRLVRNSREAPSKLSEMERV 189
[Close]
BLAST of mRNA_H-elongata_contig69861.14635.1 vs. uniprot
Match: I7M4B7_TETTS (Phospholipid-transporting ATPase n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7M4B7_TETTS)

HSP 1 Score: 75.5 bits (184), Expect = 8.900e-14
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:    1 VKMEYEAPNPRIHFFTGTLTVGTRGPGAISEVEDNESGRRGSLDAPVDQSNLLLRGSRLRNTKWVLGVVSYTGKESKIAQNARSVPSKQSNLDK 282
            VK+ YE+PNP ++ F G ++V       + E  D   G + SLD    + N++LRG  LRNTKW+ G+V YTG E+KI  NA +   KQS+++K
Sbjct:  322 VKINYESPNPLLYKFNGNISV-------VDEQTDRPIGNQVSLD----EKNIMLRGCVLRNTKWIYGIVIYTGHETKIMLNAHTPDIKQSSVEK 404
[Close]
BLAST of mRNA_H-elongata_contig69861.14635.1 vs. uniprot
Match: W7TZ71_9STRA (Phospholipid-transporting atpase id n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZ71_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.110e-13
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:   16 EAPNPRIHFFTGTLTVGTRGPGAISEVEDNESGRRGSLDAPVDQSNLLLRGSRLRNTKWVLGVVSYTGKESKIAQNARSVPSKQSNLD 279
            E PN +I  FTGT  +  +     SE    +SG    +  P+D  N+LLRG+ LRNT+W +GVV YTGK++K+ +N+R  PSK S +D
Sbjct:  157 ELPNMKIESFTGTFCISHKEEHVSSEGAP-QSGDFNKV-IPIDNENVLLRGAMLRNTRWAVGVVVYTGKDTKLQRNSRHAPSKLSKID 242
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69861.14635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J837_9PHAE1.200e-3666.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGJ4_ECTSI3.190e-3365.66Phospholipid-transporting ATPase n=1 Tax=Ectocarpu... [more]
A0A836CHZ9_9STRA2.930e-2551.79Phospholipid-transporting ATPase n=1 Tax=Tribonema... [more]
W7TQX5_9STRA1.080e-1748.45Phospholipid-transporting ATPase n=2 Tax=Monodopsi... [more]
W7TGI1_9STRA4.470e-1646.15Phospholipid-transporting ATPase n=2 Tax=Monodopsi... [more]
A0A1Y2DMD0_9FUNG3.490e-1439.78Phospholipid-transporting ATPase n=1 Tax=Neocallim... [more]
A0A7S3GHQ2_9EUKA4.190e-1440.86Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A7S3NH53_9STRA4.750e-1440.00Phospholipid-transporting ATPase n=1 Tax=Aureoumbr... [more]
I7M4B7_TETTS8.900e-1442.55Phospholipid-transporting ATPase n=1 Tax=Tetrahyme... [more]
W7TZ71_9STRA1.110e-1344.32Phospholipid-transporting atpase id n=1 Tax=Nannoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69861contigH-elongata_contig69861:1202..1501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue2.4e-28
Seed eggNOG ortholog2880.D8LGJ4
Preferred nameDNF3
KEGG rclassRC00002
KEGG koko:K01509,ko:K01530,ko:K14802
KEGG TC3.A.3.8
KEGG ReactionR00086
KEGG Pathwayko00230,ko04742,map00230,map04742
GOsGO:0000749,GO:0003674,GO:0003824,GO:0004012,GO:0005215,GO:0005319,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005798,GO:0005802,GO:0005886,GO:0005937,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006886,GO:0006892,GO:0006900,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0010033,GO:0010876,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015914,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019236,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030427,GO:0031136,GO:0031137,GO:0031139,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032456,GO:0033036,GO:0034204,GO:0034613,GO:0042221,GO:0042623,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043332,GO:0043492,GO:0043900,GO:0043902,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045332,GO:0046907,GO:0046999,GO:0048193,GO:0048194,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051286,GO:0051641,GO:0051649,GO:0051716,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0070867,GO:0070887,GO:0071310,GO:0071444,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0097035,GO:0097708,GO:0098791,GO:0120025,GO:0120038,GO:2000241,GO:2000243
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
Ec32 ortholog descriptionP-type ATPase, subfamily IV
Ec32 orthologEc-10_001840.1
EC3.6.1.3,3.6.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size294
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931096.242267-CDS-H-elongata_contig69861:1201..14951622931096.242267-CDS-H-elongata_contig69861:1201..1495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69861 1202..1495 -
1691679696.249898-CDS-H-elongata_contig69861:1201..14951691679696.249898-CDS-H-elongata_contig69861:1201..1495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69861 1202..1495 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931096.2557936-UTR-H-elongata_contig69861:1495..15011622931096.2557936-UTR-H-elongata_contig69861:1495..1501Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69861 1496..1501 -
1691679696.2679024-UTR-H-elongata_contig69861:1495..15011691679696.2679024-UTR-H-elongata_contig69861:1495..1501Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69861 1496..1501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69861.14635.1prot_H-elongata_contig69861.14635.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69861 1202..1495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69861.14635.1

>prot_H-elongata_contig69861.14635.1 ID=prot_H-elongata_contig69861.14635.1|Name=mRNA_H-elongata_contig69861.14635.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MEYEAPNPRIHFFTGTLTVGTRGPGAISEVEDNESGRRGSLDAPVDQSNL
LLRGSRLRNTKWVLGVVSYTGKESKIAQNARSVPSKQSNLDKVRYRL*
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mRNA from alignment at H-elongata_contig69861:1202..1501-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69861.14635.1 ID=mRNA_H-elongata_contig69861.14635.1|Name=mRNA_H-elongata_contig69861.14635.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig69861:1202..1501- (Himanthalia elongata Himel1 dioecious)
GTGAAGATGGAGTACGAAGCACCCAATCCCCGCATCCACTTCTTCACGGG
TACTCTCACGGTCGGCACCCGAGGCCCAGGGGCGATCTCGGAGGTGGAAG
ACAACGAGAGCGGGCGGCGGGGCTCCCTCGACGCCCCCGTGGACCAGAGC
AACCTTTTGCTGAGGGGATCGAGGCTCAGGAACACGAAGTGGGTGCTTGG
GGTGGTGTCCTACACCGGGAAGGAGTCGAAGATTGCACAGAACGCTCGGT
CCGTTCCTTCCAAACAAAGCAATCTGGACAAGGTGAGGTACCGTTTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig69861:1202..1501-

>mRNA_H-elongata_contig69861.14635.1 ID=mRNA_H-elongata_contig69861.14635.1|Name=mRNA_H-elongata_contig69861.14635.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig69861:1202..1501- (Himanthalia elongata Himel1 dioecious)
ATGGAGTACGAAGCACCCAATCCCCGCATCCACTTCTTCACGGGTACTCT
CACGGTCGGCACCCGAGGCCCAGGGGCGATCTCGGAGGTGGAAGACAACG
AGAGCGGGCGGCGGGGCTCCCTCGACGCCCCCGTGGACCAGAGCAACCTT
TTGCTGAGGGGATCGAGGCTCAGGAACACGAAGTGGGTGCTTGGGGTGGT
GTCCTACACCGGGAAGGAGTCGAAGATTGCACAGAACGCTCGGTCCGTTC
CTTCCAAACAAAGCAATCTGGACAAGGTGAGGTACCGTTTGTGAATGGAG
TACGAAGCACCCAATCCCCGCATCCACTTCTTCACGGGTACTCTCACGGT
CGGCACCCGAGGCCCAGGGGCGATCTCGGAGGTGGAAGACAACGAGAGCG
GGCGGCGGGGCTCCCTCGACGCCCCCGTGGACCAGAGCAACCTTTTGCTG
AGGGGATCGAGGCTCAGGAACACGAAGTGGGTGCTTGGGGTGGTGTCCTA
CACCGGGAAGGAGTCGAAGATTGCACAGAACGCTCGGTCCGTTCCTTCCA
AACAAAGCAATCTGGACAAGGTGAGGTACCGTTTGTGA
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