prot_H-elongata_contig6964.14614.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6964.14614.1
Unique Nameprot_H-elongata_contig6964.14614.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length552
Homology
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BLAST of mRNA_H-elongata_contig6964.14614.1 vs. uniprot
Match: A0A6H5L3Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y8_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.370e-20
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 0 
Query:    1 MAHFEDCKYFRQGNCAYGLYCGFRHNELSCLTEQVCWRWAAGYVCDGRCDMRHPSAGELAAIA 63
            MAHFEDCK++RQ  C  G++CGFRHNE S  TE++C RWAAGY CDGRC++RHPSA E+AA+A
Sbjct:    1 MAHFEDCKFYRQRACLNGVHCGFRHNEASRHTERLCNRWAAGYTCDGRCNLRHPSAAEIAALA 63
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6964.14614.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L3Y8_9PHAE2.370e-2068.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 128..152
e-value: 0.0065
score: 25.7
coord: 239..264
e-value: 2.6E-4
score: 30.3
coord: 3..27
e-value: 0.46
score: 18.9
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 242..262
e-value: 4.9E-5
score: 23.1
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 31..56
score: 6.099
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 238..265
score: 15.835
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 126..153
score: 14.155
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 1..28
score: 10.878
NoneNo IPR availableGENE3D4.10.1000.10coord: 3..68
e-value: 1.5E-5
score: 26.9
coord: 235..301
e-value: 3.5E-6
score: 28.9
coord: 124..179
e-value: 3.1E-6
score: 29.1
NoneNo IPR availablePANTHERPTHR11224MAKORIN-RELATEDcoord: 131..391
coord: 7..118
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 242..263
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 129..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6964contigH-elongata_contig6964:2159..8692 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6964.14614.1mRNA_H-elongata_contig6964.14614.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6964 981..8967 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6964.14614.1 ID=prot_H-elongata_contig6964.14614.1|Name=mRNA_H-elongata_contig6964.14614.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=552bp
MAHFEDCKYFRQGNCAYGLYCGFRHNELSCLTEQVCWRWAAGYVCDGRCD
MRHPSAGELAAIASMPPPVHRFSQQQQQQQQDEHVEKQQQQVQQQQNPNT
LENESKAAKSGPSGAAAAAPAPAAAAAAARVCRYYKQGNCSKGSACPFTH
AIEAMGEKRPRPEKGWLGAGESSQKRQLPPPGESVVNASIAEGERIAAPS
TQEERGPKGGSSSPGNTPGAVKEEKGAALSSESTSPGASPAPLCRFYLKG
RCSKGSSCTFYHATQTVGSSSVGSPTSKRQSANMPLRMAAAQARAAAALR
KVEDDAKEGEGESGTAVTNGKKIGVKEGDEVVHKTAPMETIVKAKAAAAQ
ILKKHKLSNIPAVVQGAQLESKAMVAKRPRTETVCPETKISPPKRPRSPE
GGDATRETEKEVSGVPTGIMDRPERTKRQRSPEGGGTARETGQRVADAPT
ESLDTPGRTKRQRSSEGDGAARKTGLEVVDVTTGNTDCSERSSVQRPVGS
FASEEKGVGEELRSEGASGQGDVGTLPTLSPKPPSSPLPPTHSGTSRNIP
I*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR036855Znf_CCCH_sf