mRNA_H-elongata_contig6964.14614.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6964.14614.1
Unique NamemRNA_H-elongata_contig6964.14614.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6964.14614.1 vs. uniprot
Match: A0A6H5L3Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y8_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 4.330e-20
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 3
Query:  276 MAHFEDCKYFRQGNCAYGLYCGFRHNELSCLTEQVCWRWAAGYVCDGRCDMRHPSAGELAAIA 464
            MAHFEDCK++RQ  C  G++CGFRHNE S  TE++C RWAAGY CDGRC++RHPSA E+AA+A
Sbjct:    1 MAHFEDCKFYRQRACLNGVHCGFRHNEASRHTERLCNRWAAGYTCDGRCNLRHPSAAEIAALA 63          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6964.14614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L3Y8_9PHAE4.330e-2068.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6964contigH-elongata_contig6964:981..8967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_006050.1
Hectar predicted targeting categoryother localisation
Exons4
Model size3109
Cds size1656
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6964.14614.1prot_H-elongata_contig6964.14614.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6964 2159..8692 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931094.0680447-UTR-H-elongata_contig6964:980..21581622931094.0680447-UTR-H-elongata_contig6964:980..2158Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6964 981..2158 -
1691679695.323291-UTR-H-elongata_contig6964:980..21581691679695.323291-UTR-H-elongata_contig6964:980..2158Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6964 981..2158 -
1622931094.1536264-UTR-H-elongata_contig6964:8692..89671622931094.1536264-UTR-H-elongata_contig6964:8692..8967Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6964 8693..8967 -
1691679695.391707-UTR-H-elongata_contig6964:8692..89671691679695.391707-UTR-H-elongata_contig6964:8692..8967Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6964 8693..8967 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931094.0820227-CDS-H-elongata_contig6964:2158..27471622931094.0820227-CDS-H-elongata_contig6964:2158..2747Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6964 2159..2747 -
1691679695.3468926-CDS-H-elongata_contig6964:2158..27471691679695.3468926-CDS-H-elongata_contig6964:2158..2747Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6964 2159..2747 -
1622931094.099102-CDS-H-elongata_contig6964:3093..40361622931094.099102-CDS-H-elongata_contig6964:3093..4036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6964 3094..4036 -
1691679695.3644567-CDS-H-elongata_contig6964:3093..40361691679695.3644567-CDS-H-elongata_contig6964:3093..4036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6964 3094..4036 -
1622931094.1178231-CDS-H-elongata_contig6964:7622..76941622931094.1178231-CDS-H-elongata_contig6964:7622..7694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6964 7623..7694 -
1691679695.374277-CDS-H-elongata_contig6964:7622..76941691679695.374277-CDS-H-elongata_contig6964:7622..7694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6964 7623..7694 -
1622931094.1341555-CDS-H-elongata_contig6964:8640..86921622931094.1341555-CDS-H-elongata_contig6964:8640..8692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6964 8641..8692 -
1691679695.3833823-CDS-H-elongata_contig6964:8640..86921691679695.3833823-CDS-H-elongata_contig6964:8640..8692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6964 8641..8692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6964.14614.1

>prot_H-elongata_contig6964.14614.1 ID=prot_H-elongata_contig6964.14614.1|Name=mRNA_H-elongata_contig6964.14614.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=552bp
MAHFEDCKYFRQGNCAYGLYCGFRHNELSCLTEQVCWRWAAGYVCDGRCD
MRHPSAGELAAIASMPPPVHRFSQQQQQQQQDEHVEKQQQQVQQQQNPNT
LENESKAAKSGPSGAAAAAPAPAAAAAAARVCRYYKQGNCSKGSACPFTH
AIEAMGEKRPRPEKGWLGAGESSQKRQLPPPGESVVNASIAEGERIAAPS
TQEERGPKGGSSSPGNTPGAVKEEKGAALSSESTSPGASPAPLCRFYLKG
RCSKGSSCTFYHATQTVGSSSVGSPTSKRQSANMPLRMAAAQARAAAALR
KVEDDAKEGEGESGTAVTNGKKIGVKEGDEVVHKTAPMETIVKAKAAAAQ
ILKKHKLSNIPAVVQGAQLESKAMVAKRPRTETVCPETKISPPKRPRSPE
GGDATRETEKEVSGVPTGIMDRPERTKRQRSPEGGGTARETGQRVADAPT
ESLDTPGRTKRQRSSEGDGAARKTGLEVVDVTTGNTDCSERSSVQRPVGS
FASEEKGVGEELRSEGASGQGDVGTLPTLSPKPPSSPLPPTHSGTSRNIP
I*
back to top

mRNA from alignment at H-elongata_contig6964:981..8967-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6964.14614.1 ID=mRNA_H-elongata_contig6964.14614.1|Name=mRNA_H-elongata_contig6964.14614.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7987bp|location=Sequence derived from alignment at H-elongata_contig6964:981..8967- (Himanthalia elongata Himel1 dioecious)
GCAAAAGCAATGAACTTTCAAGATAAAAAAAAGCGCAGACGTGAACCGGG GAGAGACAAGTAGAACATAGATACATAGGCGTGATGGAAAGTGTTTTGAT GGGTTATCTAGAAGGTTGAATAGCCTCAAAGGCAGAAAGCCCGGCATCTT TCGACCAATGAAAAGGAGGCTTGTTTCGGAAAGATAAGTATCCCCGGTGC TTTCAACCTGCCTACTCCCCTCCCACAAACACACTACCTCCGAACAACCA TAAGTTATCGTCAAGGCTACAAACCATGGCGCACTTCGAAGACTGCAAGT ATTTCCGCCAGGGAAACTGCGCTTATGGTGAGGCCCATCCCGAGGCATAG CGGTCAAGCTCCGTTACTTTGGGCGCTTTGCAACGATTTCATTTATATCT GTGTCGTGACTCAAGCACAGCCGCGCGACACTCCGCGCAGTTCTGTGATA TCCTACGAAGCAGAAAGTCGATCTAACCGAGCTCTGTATAAGGCCTTACT CATCTTTATCGTGACATGGCCTAGGCAACGATGGCAACGGTGCGTCCTAT GTTTTTTCTATTGCCAAACGCTGCTTCCACGTGGGACACTGTGCTCGCTG TGAAGTCCGTGGTGCTGTAAAAAGTGCGGCTGTTACTCGCCGTTGTAAAT AATACTCGTTGTAGATCCGACGCACCGTCCCTATTCGTTCGTATTCTTCA GGAGTTCTCTACGCGCCAAGAATCGCGGCGTTGCTCAGTTGCACGCTCCC CCAAGGCGCCTCTTTTGCCGTCTACCACTGCGCCTATCGCTTACGTTTCT CGGAAAACAAAACAATACAATCCCTATCTGAGGCGCACTTTTTCCAGTGT TGATTCTGCCAAATCTTTATTTCCACTTTTTCGTCCATTTCCATTTACCT ACCGTATATATTTTACAACTGCTGAGGAGACTTAATTTCCGAAAATATTG GGCCAAGCGAGATTCGAGTTCGACCAGGCCTTGAGCGAGATTTGTTTATT TGAACAACAACAGAGGAAAAACACCCCCTTCGTGCCACTTCTCGTGGTTA CATCCGCATACCCACACTCACCTCACGACAAGGCTTTGGTCGCGCGGTTT TTCCATGAAACTCTTTCGCCGGTACAGTACCGTACTTTGAATACGATGAC CACACGCACAGATAAAACACGCAATGATTATTTTTCTTACGCACAGAACC AACTTCAGTTTGTCCTCTCGTTGTTTTTTGTTTTTTTCGCCTCGCAACGC TCGCCCGCCGTCCTCTCGCCCAGGGCTCTACTGCGGCTTCCGACACAACG AGTTATCGTGCTTAACCGAACAAGTGTGCTGGAGATGGGCGGCAGGTGCG TGTCGAAGAGCATTCATTCTCCTTCCATGTTCAACTTCGTGTATGTGTGT GTTTGCGTGTGCGTCTATTTATTAAATTGGAAATTGAACATAATCGCCCT ATCCGGCCTTGTCATGCTGCCCATTCTAGGGAAAAAAATTGTGTGCGCGC TCAGCTTGATTATCGATTATCTTTGTCTCTTGTCCTGAAGTGGGGGGTTT TCGGTACAATCGGGCAATTTTCCACTTTATTATTGTATACCCTGGTAGTA GATGTTTTTTTCCTTTTACAAGGTATCATATATCAATTTGCATTAAAGTT TTGTATTGTTTCCTTCATGGTTTTCCTGTTCGGCAGCGTACCACAAGCGG GATTGGGAGGTTATTTATGTATCTTGTGTATGGTCACATTTTGAGCAGTA TAGAGTAAGATCAACCGGATTTGGTTGCCTTCTGCTCGTGGTCAGCTGAA CTGGGGGAGTATTCGCAAACCGACGTGTCGCCCCCTTACGTGTCTTGCCG GTTTGCGCGGTTTAATGCAAATTGATAAAAAGGGAAAATAAGTTCACATG TTCCCGTTCGCGCATGATGGTCTCGCGAGTCGGGTTCAGCAGTCCCGTCC CGCGTGGGGCCGGCGAGGTTGTGAAAGCAACGCAAGTATGATAGGCCAGT CCAACGTCTTCAGGGATAACTCCCCATATCGTGAGGGAGGGAGGAGTAAT TTTGCGAACCGGTTTGGCGCCCCCTCACGTGTCATGGCGGTTTGCGCCGT CTAATTCAATTTGATAAAAAGGGGAAAAAAAAATATACCCAATGGAATTA TTAATATTATAATATAGGATTCCACGTGTTATAAACAATGCACGAAAAAT ATGCACTAAATTAAAGTGAACAGGAACCTAAATTAGTCCGCCACTGGCAT ACTACGCGTCTTGAAAAGTGTATGAAAAGAATGCACTAAAGTGAAAAGGA ACCTAAACTAGTCTGCCAGTGGCGGACTAATTTAGGTTCCTGTTCACTTT AGTGCATGCTTTTCGTGCATTGTTTGTAACATGTGGAAACCCTATAATAG CATACTATATTATGACAACATCGAGTAAAGCCTAATTCGCGGTACTGTAT GATAACACTTCATTCTGGAAATCAAAAGTAATATTACTATAATAGGTGTA TTATTTTTATTAAAAAATGTTAACATTGGAACTTGACGATAGTTGATCCC CTGGACTGCTCCTCTCATAGTCCTAAAAAGGTGTGGATGTTCGGAGGGTT GGAATGAGTTCATATGTTTTTGAATAAAAGTGTGGACGTTCGAAGGATTT GAAAATAAGTTAATATGTTTTAAAAGAAAAAGAGAAACCAACAAAGTAAC TACCCCCAATGGTACACCAACGAATTGCTTCGTCGGTCCAATATCCTTAC ATTCTACATGCCCCCGAAAACAACCACGATTACGTACGAGTACTAGCAGC ACGCAACAATCGAGAATTCTTCATTAAAACTTTACATTCACATTCAGTAA TGGAATATAGAATCTAGTATAGTATATTCCGTAATATACCCCCATGGGAT GAAAATCTTGTGCAGTACTCTCAACTTTATTTGGCAATGTGAAGCGAACA GCGCACAGCACCACGATCAGACGATTGATCAGAGGACACCACCGTTTTCG CAAAAGACCTTTCCAGATTTAGGTGCTTTATTTTCTCGTTCCCCTGCGCG TAGAGAGCCCTAGTTTCCGGAGGAATCCAGCGGAAATATTCGGGTTTCCG ATGCACTGAATAAGCCGAAAGAGTTGGGGGTAATACAAAGAGCCGCAGGC AAAAACTAGCCAATAAACGATCGTGCGGGTCATCATCCCCCTGATTCGAA GGATTAATCGCATCGCCTTCCCAGGTCCGCCATACTCCCTAGCAAGAGTG TGGGGGAATTCGTCTCGTTTCCGCCACGCAGGTGCTGTATCCATGACTTA CGTTGACCGCCGATGGTTGTGAAAAGGCGTGGATTTTCGAAGTTATTGAT CCGCTATAGCATATGCAGAGCTTTCTCAAGAAGCCCTTGCTTTTGAGGGC TCAGAACTGGTCCCCGACTAACTGGCCTGCCAGACCTGCATTTGTTTTCG CGCATATTTTCGAGATTTCGCGTGAAGCGGGTTTCTGTTAAGAGGCGCAG GCAACGAAGATATATATATATATATATATATATATTGATTTGAGGCACTT TTCGCCCAATTCGCGGACCTCACGAAACCTACAAATTCGCCTGCGACCAA GGCTTATCATCATTGTCAACGCCCCCTTTCTGGAGATATCCAAACCTTTC CATGCACTCTGTACATTAGCCAATATACTCGATGGGATGTCTGCCCCTCG CATTGCTTACTATTAGGTTGCCCACTCCCTCTATTCCTTGTTTCGGTCAT ATATATTTTTCGAACGGTAACTGCCATTTCAGCTTTCTTCCGCCTCATCC CTTTTCCAGCGATTGGATGCCCAACTCTGCCCTAACCCCTTACTCGTACC GCATTACTAAATTACCCTCTTGGGAGCACTCAAGCACGATCTTCCCTTCC TATTGTATGAGCCGCTTTCATTCCCCTGTCCACACCTGTGCGATATATTC TCTCTATAATGGCGGTGGGGCAATTGCGCTCCTCAAGATTGTTGACTTGA TGGCGTGTGTCTCATGTTTTATGTGTGCGAGTTTTGGTTGCGCAACTTCC ATGCCGGCGCTTTGTCGTTTCCCGCTACTTGGTGCTCTAATGTGGCCATA TTACTCATTTACAGTGCTTGGCCATATTTACCCCAATATGTATGTATATT ATACATAGAGTATAGACTATATTTATATATTGATCATTACTCGAAGCTTC TCCCCCCCGACCCCACCACATCTTCATTTGAGTCAAACTTAAGCTGGGTT CTCACTATCCTCGTTGAATAGGAATACGTCCAACTTTTTAACGTTGGTAG ACAGTCTCCACTTGTCGGCCCAAAGCCAAGGAGGGGATTCAGAATCATGG CCGCTATTTAGTATAATTTTTTCACTAAGCCAGGATTCTGAAGCGTGGCC TGCTTGACGCTGATTTGTTTGTAACTATTGTTATTTTCTCTCTCAATTCC TGACATGCATTTATTTACAGCCCCGGTGTTCGCCGAACTTTCTCAAGATT TTTTTTGATCTTCTCAAAAAATATCTCTGGCAAGCAAATGTTCCCGGCTT GGCGATAACGCTAAGCGCTAAGCTCGGTTAGACGCCCGTTTTTTGTTTAG CCAATCTCGATGGCTTATTGTTTTCTTCCCACTTTAGTGTCGTGTATTCT TAGGACTAGAGTGCAGCAGTATCGCCTTCATATCATCCCCCCCCCGCCTC CCTCTCCAGCTTTTATTTGCGCGTCAAGATATAACTGCGATGCTCTATCG CTTGCATCAAGAAACTCCTATTAATAGAGCGAGAGAAACAATACTTGCAG GAAGTAGTTTGTAGGATCTTCGTTCAGTTTAAGTTGGCCATTTACCGGAA TATAATTATATTTTGCGTTGTCTAGTCACCTAACGGTGCCCTGTCTGTGT AACTTCCTCCTTCTCGCACTCGACACCGCAGGATATGTATGCGACGGTCG GTGCGATATGAGGCACCCTTCCGCCGGCGAACTCGCCGCGATCGCTTCCA TGCCTCCGCCCGTGCACCGCTTCTCCCAGCAGCAGCAGCAGCAGCAGCAG GACGAGCACGTAGAAAAGCAACAGCAGCAGGTGCAACAGCAGCAGAACCC GAACACTCTCGAAAATGAGTCAAAAGCGGCGAAGAGCGGCCCTTCTGGCG CCGCAGCCGCAGCCCCAGCCCCAGCCGCAGCCGCAGCCGCAGCCCGCGTT TGCAGGTATTACAAGCAGGGCAACTGCTCCAAGGGCTCGGCATGCCCTTT CACCCACGCGATTGAGGCCATGGGCGAGAAGAGGCCGCGCCCAGAGAAGG GATGGCTTGGCGCTGGCGAGTCCTCACAGAAGCGGCAGCTGCCGCCACCG GGCGAAAGTGTTGTTAATGCCTCGATCGCGGAGGGAGAGCGCATCGCAGC ACCATCGACCCAGGAGGAGCGTGGGCCGAAAGGTGGAAGCTCGTCGCCCG GTAACACCCCCGGTGCGGTGAAAGAAGAGAAGGGTGCCGCTCTCTCGAGC GAGTCAACATCTCCCGGCGCCTCCCCAGCGCCGCTATGCAGGTTTTACCT GAAGGGTCGTTGCTCGAAGGGATCGTCATGCACTTTCTATCACGCGACGC AGACAGTGGGCTCGAGCTCGGTAGGGTCACCAACGTCTAAGCGGCAATCG GCCAACATGCCTCTTCGAATGGCCGCGGCGCAGGCGCGCGCGGCCGCCGC GTTGAGGAAGGTGGAGGACGATGCCAAGGAGGGAGAGGGGGAGTCAGGAA CGGCGGTAACGAATGGCAAGAAGATCGGCGTCAAAGAAGGCGATGAGGTG GTGCACAAGACGGCTCCGATGGAAACGATCGTGAAGGCCAAGGCGGCAGC AGCGCAAATCCTCAAGAAGCACAAGTGAGATGGGCTAGCGCAGGGAATAA ATAAACGGGGAATGAGTGCTGTAGTTTGATGCTTATGTGTGGCGGAGGGG AGTGCGGTGCGGGTGCGGCTGGCCACGATAGTGGTACGGGTGTTGGAGAG GAGTGTCGTACTGATTGGCTGAATGAAACAAAGAAGGTCGGACCAAAATG TCAGATGCCTATGATTCCCAACGCGATTGCTTATCGTGATGTCCATACCA CCACCCCTCTGCATGAAGGGCGGAGCGTAGCCGATCGCACGATTAATATA TTATAATATATATATATAACCAGAGCTATATCTTCCCTCACTGCACATTC TTTTCCCCGGCTGCACGAAGACTGTCAAACATTCCAGCGGTTGTGCAGGG GGCACAACTCGAATCGAAGGCGATGGTAGCGAAGAGGCCACGTACGGAAA CGGTGTGCCCCGAGACGAAAATTTCCCCGCCTAAGCGGCCGCGGTCTCCA GAGGGCGGCGACGCGACGAGAGAGACAGAAAAAGAGGTCTCGGGAGTTCC CACGGGGATCATGGACCGCCCGGAGAGGACGAAGCGGCAGCGTTCTCCGG AGGGCGGCGGCACAGCGAGAGAGACGGGGCAAAGAGTCGCGGATGCTCCC ACGGAGAGCCTGGACACCCCGGGGAGGACGAAACGTCAGCGATCTTCGGA AGGCGACGGCGCGGCGAGAAAGACGGGACTAGAAGTTGTGGATGTTACAA CTGGGAACACGGATTGCTCGGAGAGAAGCAGCGTCCAGCGACCGGTCGGA TCGTTTGCGTCGGAGGAAAAAGGCGTTGGGGAGGAGTTGCGGTCTGAGGG TGCCAGCGGGCAAGGTGACGTCGGCACCTTGCCGACGTTGTCACCGAAAC CCCCGTCTTCACCGCTACCCCCCACCCATTCAGGAACCTCCAGAAACATT CCGATCTAGGCGTGTTTCATGAGGGGCCATCGCGACTATCTACTGCTCCT ATCTAGCCTGTGTCTGTGAAGTGTTGTGCTCGGAGGAGCCGGCAACCGCA GCAGGTTTTGTGAATTTAGGCCTTCGTTATCTTTGATTGCGCCACCCCCG CCGCATTCAGAAGCGTCCGCTATTCTTTCTGCCTAATTTTCGTTCTCTAG GGGAAGGACCTTAGCCACTAACCCCTGATATTTCGCCTACAGCTCGGAGA GAGAAGGCATTAAGGAGGTGATGTGCTCGGAGGGAATTAGCGAGCAAGGT GACGTCGGGGGCCCTCACCGACTTTATCGTCACCGAAATCATCGTCTTCG TCGCTGTCCCCACCCCCCAGTTCTCAGCAACGCCTAGAACTGTGTCGACC TATGTTTTGTTTGGGAGGCGGGTGTCGCCACCAACTACTGAGCGCGTTCT GGCGGGGGGTTGTGTGTGGAAGAACCAGCACCCGCAGCGAGGAACGTTAT TTAGAACTTCGTTATCGCTGTGTGCGCTGCCACCTTCTTACTCGGAAGTG TACACCATTATTTCTACCCAGCGTTCGTTCCCTTAGGGAAGGGCCTTCGC CATCCATTCCTAGAGAGCTCGGGGGTCTGGAGCGTCACCGCTTCGCATGG GATAAGGGTGTCTTATTTTCTCCCCCACGATCGGCGTTCCGACGATATTC TCGCGGCGTTGTCGTGCGTCGGCAAGACACGGTCGCGGTTGCGGGGTCGA TCGATATGATCGAGTGTGTTCCAGTTGGCGTTTCGCTTCACGCGACGTAC GGTGTGTAGCCTTGCGACGCGGGAGGGTTTCACGCTAAAAAGGCCGACCG ATCTCGGAAGGCACGCCATTCTGGCTCAGTATCATGTAGTTTTTTTTGTA CGTGTGATGTGGCTTGAACTCGAGCGTTGACGATTGCGGTCAAGACCCGA AGAGTGCCGGGATTTTATATTTTGTTCTCCGGGATTCCGATAAATAATAT CGCTTTTTGACGGGTGTTGTTTTTTTTTGCAGGGAATTTTCTTTCGAGGA TGGGACCTATAGTAGTCAACAAGTCAATGTTTGCTGTTATTTAGTACGAT ATTTTGACAAACGTTTCCCTCACATCTCACATGATGTGGGTGCGCACCCT GACGGCCTTGGTCTGGAAAGCCATTAAATGAAGTCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig6964:981..8967-

>mRNA_H-elongata_contig6964.14614.1 ID=mRNA_H-elongata_contig6964.14614.1|Name=mRNA_H-elongata_contig6964.14614.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3312bp|location=Sequence derived from alignment at H-elongata_contig6964:981..8967- (Himanthalia elongata Himel1 dioecious)
ATGGCGCACTTCGAAGACTGCAAGTATTTCCGCCAGGGAAACTGCGCTTA
TGATGGCGCACTTCGAAGACTGCAAGTATTTCCGCCAGGGAAACTGCGCT
TATGGGCTCTACTGCGGCTTCCGACACAACGAGTTATCGTGCTTAACCGA
ACAAGTGTGCTGGAGATGGGCGGCAGGGCTCTACTGCGGCTTCCGACACA
ACGAGTTATCGTGCTTAACCGAACAAGTGTGCTGGAGATGGGCGGCAGGA
TATGTATGCGACGGTCGGTGCGATATGAGGCACCCTTCCGCCGGCGAACT
CGCCGCGATCGCTTCCATGCCTCCGCCCGTGCACCGCTTCTCCCAGCAGC
AGCAGCAGCAGCAGCAGGACGAGCACGTAGAAAAGCAACAGCAGCAGGTG
CAACAGCAGCAGAACCCGAACACTCTCGAAAATGAGTCAAAAGCGGCGAA
GAGCGGCCCTTCTGGCGCCGCAGCCGCAGCCCCAGCCCCAGCCGCAGCCG
CAGCCGCAGCCCGCGTTTGCAGGTATTACAAGCAGGGCAACTGCTCCAAG
GGCTCGGCATGCCCTTTCACCCACGCGATTGAGGCCATGGGCGAGAAGAG
GCCGCGCCCAGAGAAGGGATGGCTTGGCGCTGGCGAGTCCTCACAGAAGC
GGCAGCTGCCGCCACCGGGCGAAAGTGTTGTTAATGCCTCGATCGCGGAG
GGAGAGCGCATCGCAGCACCATCGACCCAGGAGGAGCGTGGGCCGAAAGG
TGGAAGCTCGTCGCCCGGTAACACCCCCGGTGCGGTGAAAGAAGAGAAGG
GTGCCGCTCTCTCGAGCGAGTCAACATCTCCCGGCGCCTCCCCAGCGCCG
CTATGCAGGTTTTACCTGAAGGGTCGTTGCTCGAAGGGATCGTCATGCAC
TTTCTATCACGCGACGCAGACAGTGGGCTCGAGCTCGGTAGGGTCACCAA
CGTCTAAGCGGCAATCGGCCAACATGCCTCTTCGAATGGCCGCGGCGCAG
GCGCGCGCGGCCGCCGCGTTGAGGAAGGTGGAGGACGATGCCAAGGAGGG
AGAGGGGGAGTCAGGAACGGCGGTAACGAATGGCAAGAAGATCGGCGTCA
AAGAAGGCGATGAGGTGGTGCACAAGACGGCTCCGATGGAAACGATCGTG
AAGGCCAAGGCGGCAGCAGCGCAAATCCTCAAGAAGCACAAGATATGTAT
GCGACGGTCGGTGCGATATGAGGCACCCTTCCGCCGGCGAACTCGCCGCG
ATCGCTTCCATGCCTCCGCCCGTGCACCGCTTCTCCCAGCAGCAGCAGCA
GCAGCAGCAGGACGAGCACGTAGAAAAGCAACAGCAGCAGGTGCAACAGC
AGCAGAACCCGAACACTCTCGAAAATGAGTCAAAAGCGGCGAAGAGCGGC
CCTTCTGGCGCCGCAGCCGCAGCCCCAGCCCCAGCCGCAGCCGCAGCCGC
AGCCCGCGTTTGCAGGTATTACAAGCAGGGCAACTGCTCCAAGGGCTCGG
CATGCCCTTTCACCCACGCGATTGAGGCCATGGGCGAGAAGAGGCCGCGC
CCAGAGAAGGGATGGCTTGGCGCTGGCGAGTCCTCACAGAAGCGGCAGCT
GCCGCCACCGGGCGAAAGTGTTGTTAATGCCTCGATCGCGGAGGGAGAGC
GCATCGCAGCACCATCGACCCAGGAGGAGCGTGGGCCGAAAGGTGGAAGC
TCGTCGCCCGGTAACACCCCCGGTGCGGTGAAAGAAGAGAAGGGTGCCGC
TCTCTCGAGCGAGTCAACATCTCCCGGCGCCTCCCCAGCGCCGCTATGCA
GGTTTTACCTGAAGGGTCGTTGCTCGAAGGGATCGTCATGCACTTTCTAT
CACGCGACGCAGACAGTGGGCTCGAGCTCGGTAGGGTCACCAACGTCTAA
GCGGCAATCGGCCAACATGCCTCTTCGAATGGCCGCGGCGCAGGCGCGCG
CGGCCGCCGCGTTGAGGAAGGTGGAGGACGATGCCAAGGAGGGAGAGGGG
GAGTCAGGAACGGCGGTAACGAATGGCAAGAAGATCGGCGTCAAAGAAGG
CGATGAGGTGGTGCACAAGACGGCTCCGATGGAAACGATCGTGAAGGCCA
AGGCGGCAGCAGCGCAAATCCTCAAGAAGCACAAACTGTCAAACATTCCA
GCGGTTGTGCAGGGGGCACAACTCGAATCGAAGGCGATGGTAGCGAAGAG
GCCACGTACGGAAACGGTGTGCCCCGAGACGAAAATTTCCCCGCCTAAGC
GGCCGCGGTCTCCAGAGGGCGGCGACGCGACGAGAGAGACAGAAAAAGAG
GTCTCGGGAGTTCCCACGGGGATCATGGACCGCCCGGAGAGGACGAAGCG
GCAGCGTTCTCCGGAGGGCGGCGGCACAGCGAGAGAGACGGGGCAAAGAG
TCGCGGATGCTCCCACGGAGAGCCTGGACACCCCGGGGAGGACGAAACGT
CAGCGATCTTCGGAAGGCGACGGCGCGGCGAGAAAGACGGGACTAGAAGT
TGTGGATGTTACAACTGGGAACACGGATTGCTCGGAGAGAAGCAGCGTCC
AGCGACCGGTCGGATCGTTTGCGTCGGAGGAAAAAGGCGTTGGGGAGGAG
TTGCGGTCTGAGGGTGCCAGCGGGCAAGGTGACGTCGGCACCTTGCCGAC
GTTGTCACCGAAACCCCCGTCTTCACCGCTACCCCCCACCCATTCAGGAA
CCTCCAGAAACATTCCGATCTAGACTGTCAAACATTCCAGCGGTTGTGCA
GGGGGCACAACTCGAATCGAAGGCGATGGTAGCGAAGAGGCCACGTACGG
AAACGGTGTGCCCCGAGACGAAAATTTCCCCGCCTAAGCGGCCGCGGTCT
CCAGAGGGCGGCGACGCGACGAGAGAGACAGAAAAAGAGGTCTCGGGAGT
TCCCACGGGGATCATGGACCGCCCGGAGAGGACGAAGCGGCAGCGTTCTC
CGGAGGGCGGCGGCACAGCGAGAGAGACGGGGCAAAGAGTCGCGGATGCT
CCCACGGAGAGCCTGGACACCCCGGGGAGGACGAAACGTCAGCGATCTTC
GGAAGGCGACGGCGCGGCGAGAAAGACGGGACTAGAAGTTGTGGATGTTA
CAACTGGGAACACGGATTGCTCGGAGAGAAGCAGCGTCCAGCGACCGGTC
GGATCGTTTGCGTCGGAGGAAAAAGGCGTTGGGGAGGAGTTGCGGTCTGA
GGGTGCCAGCGGGCAAGGTGACGTCGGCACCTTGCCGACGTTGTCACCGA
AACCCCCGTCTTCACCGCTACCCCCCACCCATTCAGGAACCTCCAGAAAC
ATTCCGATCTAG
back to top