mRNA_H-elongata_contig69163.14564.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69163.14564.1
Unique NamemRNA_H-elongata_contig69163.14564.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig69163.14564.1 vs. uniprot
Match: D8LB84_ECTSI (GI23857 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB84_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 3.990e-46
Identity = 79/104 (75.96%), Postives = 87/104 (83.65%), Query Frame = 1
Query:    1 VIFLHGSGDSGPGVREWLESASSGKFCRRLAELGLGPGVFPTAPVRRYTLADGMHSTVWFDRGGLFPSSRQDRAGILESLQQVEEEVRKLEVAGVPRSGIFVGG 312
            VIFLHGSGD+G GVR+WL SAS GKF R +AELGLG  V+PTAP RRYTLA G  STVWFDR  L P SRQDRAG+L SL+QVE+EVRKLE AGVPRSG+FVGG
Sbjct:   12 VIFLHGSGDTGGGVRDWLSSASGGKFDRAIAELGLGEVVYPTAPERRYTLAGGAVSTVWFDRERLSPGSRQDRAGVLRSLRQVEDEVRKLEDAGVPRSGVFVGG 115          
BLAST of mRNA_H-elongata_contig69163.14564.1 vs. uniprot
Match: A0A6H5K9N1_9PHAE (Abhydrolase_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9N1_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 3.600e-45
Identity = 77/104 (74.04%), Postives = 85/104 (81.73%), Query Frame = 1
Query:    1 VIFLHGSGDSGPGVREWLESASSGKFCRRLAELGLGPGVFPTAPVRRYTLADGMHSTVWFDRGGLFPSSRQDRAGILESLQQVEEEVRKLEVAGVPRSGIFVGG 312
            VIFLHGSGD+G GVR+WL SAS GKF R +AELGLG  V+PTAP RRYTLA G  STVWFDR  L P S QDRAG+L SL+QVE+EVRKLE AGVP SG+FVGG
Sbjct:   12 VIFLHGSGDTGRGVRDWLSSASGGKFNRAIAELGLGEVVYPTAPERRYTLAGGAPSTVWFDRERLSPGSPQDRAGVLRSLRQVEDEVRKLEDAGVPSSGVFVGG 115          
BLAST of mRNA_H-elongata_contig69163.14564.1 vs. uniprot
Match: A0A7S4S2G1_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4S2G1_9DINO)

HSP 1 Score: 98.2 bits (243), Expect = 8.470e-23
Identity = 52/104 (50.00%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    1 VIFLHGSGDSGPGVREWLESASSGKFCRRLAELGLGPGVFPTAPVRRYTLADGMHSTVWFDRGGLFPSSRQDRAGILESLQQVEEEVRKLEVAGVPRSGIFVGG 312
            +IFLHGSGD G G+R+WL S S G F RRL   G+   V+P AP   YTL  G    VWFDR  L  ++ +D AG+  SL+QV+ E+ +L  AG+ RS I VGG
Sbjct:   35 LIFLHGSGDCGAGIRDWLASTSGGDFERRLTAAGVKV-VYPDAPAVPYTLNGGYPQNVWFDRVALAYNAPEDVAGVARSLEQVDAEIDRLIEAGISRSHIAVGG 137          
BLAST of mRNA_H-elongata_contig69163.14564.1 vs. uniprot
Match: A0A835ZH59_9STRA (Alpha/Beta hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH59_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.910e-21
Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    1 VIFLHGSGDSGPGVREWLESASSGKFCRRLAELGLGPGVFPTAPVRRYTLADGMHSTVWFDRGGLFPSSRQDRAGILESLQQVEEEVRKLEVAGVPRSGIFVGG 312
            +IFLHGSGD+GPGV+EWL+  + G F R LA  G+   ++PTAP+R YT+  G    VW DR  L  +S  D   +LES++ VE  + +LE AGV RS + +GG
Sbjct:    4 LIFLHGSGDTGPGVQEWLDYITGGSFERTLAGQGI-LCLYPTAPLRPYTMCQGELRHVWHDRLALDFNSIPDEEHVLESMEIVEGLLEELEEAGVDRSAVVLGG 106          
BLAST of mRNA_H-elongata_contig69163.14564.1 vs. uniprot
Match: A0A7S0CGJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CGJ5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.480e-16
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    1 VIFLHGSGDSGPGVREWLESASSGKFCRRLAELGLGPGVFPTAPVRRYTLADGMHSTVWFDR-GGLFPSSRQDRAGILESLQQVEEEVRKLEVAGVPRSGI 300
            +IF HGSGDSGPGV+ ++E+ +S      L   G+    +PTA  R Y L  G+ STVWFDR GG+ P + +D   +L S++Q+ + +++    GVP   I
Sbjct:    9 IIFCHGSGDSGPGVQNYVEALTSPSTLLELESRGI-QFRYPTAQRRPYRLMGGLKSTVWFDRYGGMDPKNPEDTPSVLNSVEQLHQLIKEYIEQGVPSGKI 108          
BLAST of mRNA_H-elongata_contig69163.14564.1 vs. uniprot
Match: A0A7S3PHF1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PHF1_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.650e-15
Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = 1
Query:    1 VIFLHGSGDSGPGVREWLESASSGKFCRRLAELGLGPGVFPTAPVRRYTLADGMHSTVWFDRGGLFPSSRQDRAGILESLQQVEEEVRKL---EVAGVPRSGIFVGG 312
            VIFLHGSGD+GPGVR+W+   S   F  RL  +G+    FPTA  R YTL  G   TVW +R GL P + ++   I ES+ +++  + K    ++   P S IFVGG
Sbjct:    5 VIFLHGSGDTGPGVRDWVNQYS---FESRLGSVGVSVQ-FPTATPRPYTLWGGETGTVWMNRLGLNPDAEEETTSIKESMSKIDGIIDKALEEKLVSSP-SRIFVGG 106          
BLAST of mRNA_H-elongata_contig69163.14564.1 vs. uniprot
Match: A0A210QNP8_MIZYE (Palmitoyl-protein hydrolase n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210QNP8_MIZYE)

HSP 1 Score: 75.9 bits (185), Expect = 1.770e-14
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    1 VIFLHGSGDSGPGVREWLESASSGKFCRRLAELGLGPGVFPTAPVRRYTLADGMHSTVWFDRGGLFPSSRQDRAGILESLQQVEEEVRKLEVAGVPRSGIFVGG 312
            V+FLHGSGD+G GV EW+  AS G+F    A++     ++PTAP+R YT   G  S VWFDR  + P+  +    +      +   +++    G+P+S I +GG
Sbjct:   25 VLFLHGSGDTGDGVSEWVTMASRGEFHFPHAKV-----LYPTAPLRHYTPMGGAMSNVWFDRMQISPTVPEHSQSVEAMCANLSTLIQEQVANGIPKSRIIIGG 123          
BLAST of mRNA_H-elongata_contig69163.14564.1 vs. uniprot
Match: A0A6V2CF54_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2CF54_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.130e-14
Identity = 44/105 (41.90%), Postives = 62/105 (59.05%), Query Frame = 1
Query:    1 VIFLHGSGDSGPGVREWLESASSGKFCRRLAELGLGPGVFPTAPVRRYTLADGMHSTVWFDRG-GLFPSSRQDRAGILESLQQVEEEVRKLEVAGVPRSGIFVGG 312
            VIF HGSGD+G GV+ ++ES +  K    L E G+    FP+A +R Y LA G  S+VWFDR  G+ P++ +D A +  S  Q+ + +  L   GVP   I +GG
Sbjct:   41 VIFCHGSGDTGEGVKSYVESVAPRKSLALLKEAGI-EFEFPSAKIRPYRLAGGYPSSVWFDRYVGMEPTNPEDTASVESSAAQLNKLIDDLVERGVPAHKIALGG 144          
BLAST of mRNA_H-elongata_contig69163.14564.1 vs. uniprot
Match: A0A1Q9EQI6_SYMMI (Lysophospholipase-like protein 1 n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EQI6_SYMMI)

HSP 1 Score: 77.4 bits (189), Expect = 2.190e-14
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    1 VIFLHGSGDSGPGVREWLESASSGKFCRRLAELGLGPGVFPTAPVRRYTLADGMHSTVWFDRGGLFPSSRQDRAGILESLQQVEEEVRKLEVAGVPRSGIFVGG 312
            V+FLHGSGDSG G++ +L +   G     LA  G+    +P + V  YTLA G    +W+DR GL P++ +D A + ES+  + + + K+   GVP + I +GG
Sbjct:  214 VVFLHGSGDSGAGLKAYLRAVDGGDLLDELAVQGIKT-YWPDSGVHPYTLAGGESMPIWYDRKGLPPTAPEDTASVEESVHILVKLLDKVRADGVPANRIVIGG 316          
BLAST of mRNA_H-elongata_contig69163.14564.1 vs. uniprot
Match: UPI001B88763C (lysophospholipase-like protein 1 n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88763C)

HSP 1 Score: 75.5 bits (184), Expect = 2.400e-14
Identity = 45/108 (41.67%), Postives = 61/108 (56.48%), Query Frame = 1
Query:    1 VIFLHGSGDSGPGVREWLESASSGKFCRRLAELGLGPGVFPTAPVRRYTLADGMHSTVWFDRGGLFPSSRQDRAGILESLQQVEEEVRKLEVA----GVPRSGIFVGG 312
            VIFLHGSGD+GPG+R+WL+S    +F      +     +FPTAP R Y+   G  STVWFDR  + P + +      ESL    +EV  L  A    G+P++ I +GG
Sbjct:   25 VIFLHGSGDTGPGIRQWLQSVLGEEFAFPHLRV-----IFPTAPPRPYSPMGGAVSTVWFDRDQISPFTAET-----ESLTTACKEVSHLIEAEVKNGIPKNRIVIGG 122          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69163.14564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB84_ECTSI3.990e-4675.96GI23857 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5K9N1_9PHAE3.600e-4574.04Abhydrolase_2 domain-containing protein n=1 Tax=Ec... [more]
A0A7S4S2G1_9DINO8.470e-2350.00Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A835ZH59_9STRA2.910e-2148.08Alpha/Beta hydrolase protein (Fragment) n=1 Tax=Tr... [more]
A0A7S0CGJ5_9STRA4.480e-1640.59Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S3PHF1_9STRA6.650e-1543.93Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A210QNP8_MIZYE1.770e-1437.50Palmitoyl-protein hydrolase n=1 Tax=Mizuhopecten y... [more]
A0A6V2CF54_9STRA2.130e-1441.90Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A1Q9EQI6_SYMMI2.190e-1438.46Lysophospholipase-like protein 1 n=3 Tax=Symbiodin... [more]
UPI001B88763C2.400e-1441.67lysophospholipase-like protein 1 n=1 Tax=Gigantope... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69163contigH-elongata_contig69163:1767..2694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.8
Seed ortholog evalue7e-37
Seed eggNOG ortholog2880.D8LB84
Preferred nameLYPLAL1
KEGG koko:K06999
GOsGO:0002084,GO:0003674,GO:0003824,GO:0004620,GO:0004622,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008474,GO:0009056,GO:0009057,GO:0009987,GO:0016298,GO:0016787,GO:0016788,GO:0016790,GO:0019538,GO:0030163,GO:0032879,GO:0032880,GO:0035601,GO:0036211,GO:0042157,GO:0042159,GO:0042996,GO:0042997,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051223,GO:0051224,GO:0052689,GO:0060341,GO:0060627,GO:0065007,GO:0070201,GO:0071704,GO:0090087,GO:0098599,GO:0098732,GO:0098734,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1903076,GO:1903077,GO:1903827,GO:1903828,GO:1904375,GO:1904376,GO:1904950,GO:1905475,GO:1905476
EggNOG free text desc.acyl-protein thioesterase
EggNOG OGsCOG0400@1,KOG2112@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhospholipase/carboxylesterase/thioesterase
Ec32 orthologEc-27_004830.1
Exons2
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931088.8237984-CDS-H-elongata_contig69163:1766..18471622931088.8237984-CDS-H-elongata_contig69163:1766..1847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69163 1767..1847 -
1691679693.2479167-CDS-H-elongata_contig69163:1766..18471691679693.2479167-CDS-H-elongata_contig69163:1766..1847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69163 1767..1847 -
1622931088.8530357-CDS-H-elongata_contig69163:2448..26941622931088.8530357-CDS-H-elongata_contig69163:2448..2694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69163 2449..2694 -
1691679693.2693484-CDS-H-elongata_contig69163:2448..26941691679693.2693484-CDS-H-elongata_contig69163:2448..2694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69163 2449..2694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69163.14564.1prot_H-elongata_contig69163.14564.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69163 1767..2694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69163.14564.1

>prot_H-elongata_contig69163.14564.1 ID=prot_H-elongata_contig69163.14564.1|Name=mRNA_H-elongata_contig69163.14564.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
VIFLHGSGDSGPGVREWLESASSGKFCRRLAELGLGPGVFPTAPVRRYTL
ADGMHSTVWFDRGGLFPSSRQDRAGILESLQQVEEEVRKLEVAGVPRSGI
FVGGEVER*
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mRNA from alignment at H-elongata_contig69163:1767..2694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69163.14564.1 ID=mRNA_H-elongata_contig69163.14564.1|Name=mRNA_H-elongata_contig69163.14564.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=928bp|location=Sequence derived from alignment at H-elongata_contig69163:1767..2694- (Himanthalia elongata Himel1 dioecious)
GTGATTTTCCTCCACGGCTCCGGCGACTCGGGGCCTGGTGTGCGCGAGTG GCTGGAGTCCGCGTCAAGCGGTAAGTTCTGTCGACGCCTAGCGGAACTCG GTTTGGGACCTGGCGTGTTCCCCACGGCTCCGGTGAGGCGTTACACCCTG GCCGACGGAATGCACTCTACAGTTTGGTTTGATCGGGGAGGCTTGTTCCC GTCATCTCGGCAAGACCGAGCGGGCATCTTAGAGTCTCTACAGCAGGTGC GCTGGAGCAGTCCTAGGGCACACAGCAGTAATTACTCTCGAAAGGAAGAT GGGGTTGTTTGGCGAATAAGTTTTGACGAGAGAAAGAGGGGGGAGGGGGG GGGGAGCAAATATGGCCCGAGAGGGGAAACGTGTGCCGATTGGAGATGCA GCAGTCAGAAGCGACGTCGCCCTCGTGCACTGGTCGCCCATTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTGCTCCTTTAGTTAAGTTTATCATCGCAATGATTCGGTGAC GCGAAGCATTTTCACATTATATAGTATACATTATATAGTATACATTATAT AGCATACATTATAAAGTAGACATTATAAAGTAGACATTATACAGTAGACA TCATACAGTATATACTCCGTATTAAGCAATGTATAAAAACTTGCTAAAAT CGTGCTCTCGTGCTTTGTGCTTTTGCGGAAAAAGTGCAAACGAGTTCCGC GAAGCAAGGTTTGCATTATCCTTAGCAAGCACCCACACGCTCGGCAGTGA TATTTCATGCGACCTGGACGTTTTCCCACGGCATTCGTTCTCTACAGGTG GAGGAGGAAGTGCGGAAGCTGGAAGTCGCGGGAGTTCCTCGCAGCGGCAT TTTTGTGGGCGGTGAGGTAGAGAGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig69163:1767..2694-

>mRNA_H-elongata_contig69163.14564.1 ID=mRNA_H-elongata_contig69163.14564.1|Name=mRNA_H-elongata_contig69163.14564.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig69163:1767..2694- (Himanthalia elongata Himel1 dioecious)
GTGATTTTCCTCCACGGCTCCGGCGACTCGGGGCCTGGTGTGCGCGAGTG
GCTGGAGTCCGCGTCAAGCGGTAAGTTCTGTCGACGCCTAGCGGAACTCG
GTTTGGGACCTGGCGTGTTCCCCACGGCTCCGGTGAGGCGTTACACCCTG
GCCGACGGAATGCACTCTACAGTTTGGTTTGATCGGGGAGGCTTGTTCCC
GTCATCTCGGCAAGACCGAGCGGGCATCTTAGAGTCTCTACAGCAGGTGA
TTTTCCTCCACGGCTCCGGCGACTCGGGGCCTGGTGTGCGCGAGTGGCTG
GAGTCCGCGTCAAGCGGTAAGTTCTGTCGACGCCTAGCGGAACTCGGTTT
GGGACCTGGCGTGTTCCCCACGGCTCCGGTGAGGCGTTACACCCTGGCCG
ACGGAATGCACTCTACAGTTTGGTTTGATCGGGGAGGCTTGTTCCCGTCA
TCTCGGCAAGACCGAGCGGGCATCTTAGAGTCTCTACAGCAGGTGGAGGA
GGAAGTGCGGAAGCTGGAAGTCGCGGGAGTTCCTCGCAGCGGCATTTTTG
TGGGCGGTGAGGTAGAGAGATAGGTGGAGGAGGAAGTGCGGAAGCTGGAA
GTCGCGGGAGTTCCTCGCAGCGGCATTTTTGTGGGCGGTGAGGTAGAGAG
ATAG
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