mRNA_H-elongata_contig69011.14544.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69011.14544.1
Unique NamemRNA_H-elongata_contig69011.14544.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69011.14544.1 vs. uniprot
Match: D7G4J5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J5_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 8.960e-12
Identity = 37/58 (63.79%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    1 QTFMEKVGDMLEAAAETAIPAAPVNGGVKRPRRTPA-----WEHWDAVALGEFMVEEA 159
            +TFMEK GDMLEAAAETAIPAAP  GGV    R        WE WDA  L EFM EEA
Sbjct:  447 KTFMEKFGDMLEAAAETAIPAAPGGGGVGYGSRAATAGPREWEQWDAPLLLEFMKEEA 504
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BLAST of mRNA_H-elongata_contig69011.14544.1 vs. uniprot
Match: A0A6H5JC90_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC90_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 1.180e-5
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:    1 QTFMEKVGDMLEAAAETAIPAAPVNGGV 84
            +TFMEK GDMLEAAAETAIPAAP  GGV
Sbjct:   56 KTFMEKFGDMLEAAAETAIPAAPGGGGV 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69011.14544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4J5_ECTSI8.960e-1263.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC90_9PHAE1.180e-585.71PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69011contigH-elongata_contig69011:693..851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size150
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.2204428-CDS-H-elongata_contig69011:692..8421622931087.2204428-CDS-H-elongata_contig69011:692..842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69011 693..842 -
1691679692.7169251-CDS-H-elongata_contig69011:692..8421691679692.7169251-CDS-H-elongata_contig69011:692..842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69011 693..842 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.2346027-UTR-H-elongata_contig69011:842..8511622931087.2346027-UTR-H-elongata_contig69011:842..851Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69011 843..851 -
1691679692.7270193-UTR-H-elongata_contig69011:842..8511691679692.7270193-UTR-H-elongata_contig69011:842..851Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69011 843..851 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69011.14544.1prot_H-elongata_contig69011.14544.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69011 693..842 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69011.14544.1

>prot_H-elongata_contig69011.14544.1 ID=prot_H-elongata_contig69011.14544.1|Name=mRNA_H-elongata_contig69011.14544.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MEKVGDMLEAAAETAIPAAPVNGGVKRPRRTPAWEHWDAVALGEFMVEEA
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mRNA from alignment at H-elongata_contig69011:693..851-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69011.14544.1 ID=mRNA_H-elongata_contig69011.14544.1|Name=mRNA_H-elongata_contig69011.14544.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig69011:693..851- (Himanthalia elongata Himel1 dioecious)
CAGACCTTCATGGAGAAAGTCGGAGACATGCTGGAGGCGGCGGCCGAGAC
CGCTATTCCCGCGGCTCCCGTTAACGGCGGCGTGAAGAGGCCTCGCAGGA
CCCCAGCCTGGGAGCACTGGGACGCTGTTGCCCTCGGGGAGTTCATGGTA
GAAGAGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig69011:693..851-

>mRNA_H-elongata_contig69011.14544.1 ID=mRNA_H-elongata_contig69011.14544.1|Name=mRNA_H-elongata_contig69011.14544.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig69011:693..851- (Himanthalia elongata Himel1 dioecious)
ATGGAGAAAGTCGGAGACATGCTGGAGGCGGCGGCCGAGACCGCTATTCC
CGCGGCTCCCGTTAACGGCGGCGTGAAGAGGCCTCGCAGGACCCCAGCCT
GGGAGCACTGGGACGCTGTTGCCCTCGGGGAGTTCATGGTAGAAGAGGCG
ATGGAGAAAGTCGGAGACATGCTGGAGGCGGCGGCCGAGACCGCTATTCC
CGCGGCTCCCGTTAACGGCGGCGTGAAGAGGCCTCGCAGGACCCCAGCCT
GGGAGCACTGGGACGCTGTTGCCCTCGGGGAGTTCATGGTAGAAGAGGCG
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