mRNA_H-elongata_contig68831.14521.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68831.14521.1
Unique NamemRNA_H-elongata_contig68831.14521.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68831.14521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68831contigH-elongata_contig68831:2032..2635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size605
Cds size456
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931083.5472157-UTR-H-elongata_contig68831:2031..21791622931083.5472157-UTR-H-elongata_contig68831:2031..2179Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68831 2032..2179 +
1691679691.1557941-UTR-H-elongata_contig68831:2031..21791691679691.1557941-UTR-H-elongata_contig68831:2031..2179Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68831 2032..2179 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931083.5664155-CDS-H-elongata_contig68831:2179..26351622931083.5664155-CDS-H-elongata_contig68831:2179..2635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68831 2180..2635 +
1691679691.1667187-CDS-H-elongata_contig68831:2179..26351691679691.1667187-CDS-H-elongata_contig68831:2179..2635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68831 2180..2635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68831.14521.1prot_H-elongata_contig68831.14521.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68831 2180..2635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68831.14521.1

>prot_H-elongata_contig68831.14521.1 ID=prot_H-elongata_contig68831.14521.1|Name=mRNA_H-elongata_contig68831.14521.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
MPWPLNRREEKVPCLAQGRPTWSPISSVRKQSSAVKNKRHNHRQITSQEM
DDDDDCDHHITLRGADSNTHTHTAHSGPQIHRSINTKDHTPSVGRFVCLP
VVRKDQAGRDLDGFVFPSTCQPQGYVHTHFRPPRPLQTLLPVTESYIHVA
YR
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mRNA from alignment at H-elongata_contig68831:2032..2635+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68831.14521.1 ID=mRNA_H-elongata_contig68831.14521.1|Name=mRNA_H-elongata_contig68831.14521.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=604bp|location=Sequence derived from alignment at H-elongata_contig68831:2032..2635+ (Himanthalia elongata Himel1 dioecious)
CCCAGACATGCAGTTCTAGCACAATTCGGTGGGACCACTGTTTTTATGAG
AGGTGGCGAACACTATAGATACAGATAGTCATATTACAGCGCGCTGATAA
ATGTCCTGTATATTGGACAAAAATGGGGGGCGGGGTATCTAGTTTCACAT
GCCTTGGCCGTTAAACCGCAGGGAAGAGAAGGTGCCGTGCCTTGCGCAGG
GTCGACCCACTTGGTCGCCAATCTCGAGCGTGCGTAAACAAAGCTCTGCC
GTTAAAAACAAAAGACACAACCATCGTCAAATTACCTCGCAGGAAATGGA
CGACGACGACGACTGCGATCATCATATCACCTTACGGGGGGCCGACTCGA
ACACCCACACCCACACAGCACACAGTGGCCCTCAAATACATCGCTCTATT
AATACAAAAGACCACACTCCATCCGTCGGTCGGTTTGTCTGCCTGCCTGT
CGTGCGGAAGGATCAAGCTGGACGGGACTTAGACGGTTTCGTCTTCCCCA
GCACGTGCCAGCCCCAGGGCTATGTACACACACACTTCAGACCGCCGCGA
CCGCTTCAGACCTTGCTGCCAGTTACGGAGAGCTACATCCACGTGGCCTA
CCGC
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Coding sequence (CDS) from alignment at H-elongata_contig68831:2032..2635+

>mRNA_H-elongata_contig68831.14521.1 ID=mRNA_H-elongata_contig68831.14521.1|Name=mRNA_H-elongata_contig68831.14521.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig68831:2032..2635+ (Himanthalia elongata Himel1 dioecious)
ATGCCTTGGCCGTTAAACCGCAGGGAAGAGAAGGTGCCGTGCCTTGCGCA
GGGTCGACCCACTTGGTCGCCAATCTCGAGCGTGCGTAAACAAAGCTCTG
CCGTTAAAAACAAAAGACACAACCATCGTCAAATTACCTCGCAGGAAATG
GACGACGACGACGACTGCGATCATCATATCACCTTACGGGGGGCCGACTC
GAACACCCACACCCACACAGCACACAGTGGCCCTCAAATACATCGCTCTA
TTAATACAAAAGACCACACTCCATCCGTCGGTCGGTTTGTCTGCCTGCCT
GTCGTGCGGAAGGATCAAGCTGGACGGGACTTAGACGGTTTCGTCTTCCC
CAGCACGTGCCAGCCCCAGGGCTATGTACACACACACTTCAGACCGCCGC
GACCGCTTCAGACCTTGCTGCCAGTTACGGAGAGCTACATCCACGTGGCC
TACCGCATGCCTTGGCCGTTAAACCGCAGGGAAGAGAAGGTGCCGTGCCT
TGCGCAGGGTCGACCCACTTGGTCGCCAATCTCGAGCGTGCGTAAACAAA
GCTCTGCCGTTAAAAACAAAAGACACAACCATCGTCAAATTACCTCGCAG
GAAATGGACGACGACGACGACTGCGATCATCATATCACCTTACGGGGGGC
CGACTCGAACACCCACACCCACACAGCACACAGTGGCCCTCAAATACATC
GCTCTATTAATACAAAAGACCACACTCCATCCGTCGGTCGGTTTGTCTGC
CTGCCTGTCGTGCGGAAGGATCAAGCTGGACGGGACTTAGACGGTTTCGT
CTTCCCCAGCACGTGCCAGCCCCAGGGCTATGTACACACACACTTCAGAC
CGCCGCGACCGCTTCAGACCTTGCTGCCAGTTACGGAGAGCTACATCCAC
GTGGCCTACCGC
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