mRNA_H-elongata_contig688.14517.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig688.14517.1 vs. uniprot
Match: D7FP33_ECTSI (E3 ubiquitin-protein ligase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP33_ECTSI) HSP 1 Score: 306 bits (784), Expect = 3.650e-90 Identity = 205/575 (35.65%), Postives = 305/575 (53.04%), Query Frame = 3
Query: 3 IVYIIYDTVMSRANPASNIEIKQNVFQLPDMAFCVSYLEGCLDLGGTCFNPDWTPWYLNGLDGFLYDMNDF--DSTEKSLAIEAKYPGCSVIPLSNLKMDQEGIDNGDVTSLSASLYFFWDEDHYNTYNRTVAGSNINTQFVKVFFIDLENNVEAIGENIVDAKLPYERVIVTRNTDIATIKNHMVLTMTEFVGISSTSGKEKKAERTFAQSTTSAPQNWYWLGESKNITLSFMTLDVTIGKFEYTRIVEVDPVNGWTIIGSIGGIWQFVVLGFGMFFVYAEKQPPDMKILNMRKTIFKPARIITNVLSNVSSNSSAQVKNKYRQQSFSRGNRIAD------------------ASQQSSPPERI-NPNTVSRSSST------RPRGSRPAQRVQTEDRDQYDEWLPPGWVERNDEQDGTDYINTIMETTKRQRPNL--RASFNNRFAIQAVDIPMVRSRVRS-ASSSVNPLESK-----EEERGLDFNDTEIIQSSVWTTSSAPLRLVAPTRVDMS----------------------------LPPNWQEHTTRHGNIYYANLTTKRTQLERP 1538
+ YII+ T+ SR +PAS+IE+KQ ++ D+ FC + GCL+ +CF D++ + +GF D++ F D+ + + AIE ++P C VIPLS L MD++GI++GDV S AS YF W E +T++ + IN QF+ + ID+E VE + VD KLPY R+ T T++ T NHMV+ +TEF GI +E++ +RT++QSTT+ QNWYW E+ + + + +DV+I KFEYT IVEVDPV+GW+IIG+IGGIWQFVV GFG+FFVY+ KQ PD K+ N RK++ KPA I+ LS + S SS + N+ + S + AD +QS+PP+ + + ++S T RP + V E + LPPGW+ R D+ T + +T+ +TT+ +RP R+S + + +D+PM +R S ASS+ N S + G + + W S P T V +S LPPNW+ T + YY N T+ ++ E P
Sbjct: 69 VAYIIWQTIESRKDPASSIELKQEHYEFADIMFCTEFTNGCLEETNSCF--DFSAGAMVSAEGFTDDLDTFLDDNADATSAIEEEFPHCRVIPLSRLTMDEDGINSGDVDSFDASFYFLWYESA-DTFDPEIYP--INAQFLSAYLIDVEAGVEPLEGKSVDVKLPYARIEPTTATELTTTVNHMVMGLTEFAGIDDNGNREER-QRTYSQSTTTGTQNWYWTEETIELEFALIMVDVSIPKFEYTSIVEVDPVDGWSIIGAIGGIWQFVVTGFGLFFVYSVKQSPDRKMRNFRKSVTKPASIVNKRLSTLGSRSS--ISNQDIELDASEEDLPADWVKKQRANGSIYYFHPLTGKKQSTPPDALGSARGGPQASGTALNRIFRPAHASSGAGVSREHGQLSGDPLPPGWISRTDDSGKTYFQDTVSKTTQWERPTQHPRSSSVSSGRPEVIDMPMAHTRRGSNASSADNSRRSSSSHAHDHPHGRESAAGDPSPPPAW--GSFPAAPSYKTAVYLSNRSAQTAAGXXXXXXXXXXXXXXXXGGPLPPNWERRTASNNRPYYVNTVTRESKWEAP 633
BLAST of mRNA_H-elongata_contig688.14517.1 vs. uniprot
Match: D7FP34_ECTSI (Similar to neural cell expressed, developmentally down-regulated 4-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP34_ECTSI) HSP 1 Score: 264 bits (674), Expect = 3.070e-74 Identity = 182/464 (39.22%), Postives = 261/464 (56.25%), Query Frame = 3
Query: 9 YIIYDTVMSRANPASNIEIKQNVFQLPDMAFCVSYLEGCLDLGGTCFNPDWTPWYLNGLDGFL-YDMNDFDS-TEKSLAIEAKYPGCSVIPLSNLKMDQEGIDNGDVTSLSASLYFFWDE-DHYNTYNRTVAGSNINTQFVKVFFIDLENNVEAIGENIVDAKLPYERVIVTRNTDIATIKNHMVLTMTEFVGISSTSGKEKKAERTFAQSTTSAPQNWYWLGES-KNITLSFMTLDVTIGKFEYTRIVEVDPVNGWTIIGSIGGIWQFVVLGFGMFFVYAEKQPPDMKILNMRKTIFKPARIITNVLS--NVSSNSSAQ---------------VKNKYRQQSFSRGNRIADASQQSSPPERINPNTVSRSSSTRPRGSRPAQ-RVQTEDRDQYDEW--LPPGWVERNDEQDGTDYINTIMETTKRQRPNLR--ASFNNRFAIQAVDIPMVRSRVRSASSSVN 1322
YII++TV SR +PAS+IE+KQ + PD+A C ++ +GCLD CF D + + GFL YD N D S E YP C +PLS + +D+ G+ NG VTS S + Y WDE D + ++ + IN QF+ ++ I ++++E+ VDAK+PY R+ +T +T NHMVL +TEF GI+ +G +K+ +R+F+Q+T + ++W+W E ++ F ++++IGKFE+T I EVDPV+GW+IIG+IGGIWQFVV GFG+FFV++EKQ PD K+ N RK+I KPA LS N SS SS Q VK + S N + A Q +SP N + + + P S A R+ +R LP GW+E D Y++TI +TT+ +RP R +S QAVD PM +SR S +SS N
Sbjct: 63 YIIWETVESRKDPASSIELKQEHYTFPDVALCTTFGKGCLDYDNDCFE-DLSFTSMFNQTGFLDYDQNFTDDFAYVSEPFEEVYPNCKFVPLSMMTVDETGVKNGSVTSFSTAFYVLWDEKDTFYDHSYYL----INRQFLDMYLIPPDSSIESFTSASVDAKVPYSRLNLTTDTAFEATINHMVLGVTEFTGINE-NGNKKEKQRSFSQATITGVEHWWWGAEDYDSVEFGFFMVELSIGKFEFTSIEEVDPVDGWSIIGAIGGIWQFVVTGFGLFFVFSEKQSPDRKMRNFRKSIGKPAEFANKRLSILNTSSRSSNQDVEIDASEEDLPVEWVKKQRPNGSIYYFNVMTGAKQTASP------NHLDNAGGSAPPPSNSALGRIFQGNRSARPNSGPLPAGWIEGTDGDGKKYYLDTINKTTQWERPLQREHSSGGPDRRPQAVDAPMSQSRRYSHASSDN 514
BLAST of mRNA_H-elongata_contig688.14517.1 vs. uniprot
Match: D8LQB8_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB8_ECTSI) HSP 1 Score: 258 bits (660), Expect = 1.180e-73 Identity = 143/326 (43.87%), Postives = 208/326 (63.80%), Query Frame = 3
Query: 3 IVYIIYDTVMSRANPASNIEIKQNVFQLPDMAFCVSYLEGCLDLGGT-CF-NPDWTPWYLNGLDGFLYDMNDFDSTEKSLAIEAKYPGCSVIPLSNLKMDQEGIDNGDVTSLSASLYFFWDEDHYNTYNRTV----AGSNINTQFVKVFFIDLENNVEAIGENIVDAKLPYERVIVTRNTDIATIKNHM---------VLTMTEFVGISSTSGKEKKAERTFAQSTTSAPQNWYWLGESKNITLSFMTLDVTIGKFEYTRIVEVDPVNGWTIIGSIGGIWQFVVLGFGMFFVYAEKQPPDMKILNMRKTIFKPARIITNVLSNVSS 935
I +I++D V SR +PA++ E+K VF PD+A CVS EGCL + CF N +T + G GF+ + ++ E SLAI+ YP C V+P S L ++Q GI+NGD+ A WDED ++ ++ V G +INTQFV +FF+D++ VEAIGE + DAKLPY+R+ T + + +HM V+ MT+F IS++SG+++ +RTF QS+TSA NWY + L+ + ++ I KFEYT I +VDPV+GW IIG+IGG+WQFVV+ FG+FFV++EKQ PD KI N +K++ KPA ++ LS+ +S
Sbjct: 64 IAFIVWDAVESRTDPAASFELKLEVFTFPDLAVCVSQYEGCLTYPPSDCFVNASFTMF---GQYGFM--EAELEADEASLAIQEAYPHCRVLPTSKLTVNQTGIENGDINHFYAIFGLLWDEDPHDDFDPAVELASTGVSINTQFVNLFFVDVDLGVEAIGEELTDAKLPYDRLSPTTSGSMVGTMSHMKSCWATTGQVIEMTQFQPISTSSGQKQDPQRTFTQSSTSATVNWY--NPDFDEELAALLFNMFIPKFEYTSIEQVDPVDGWAIIGAIGGVWQFVVIAFGLFFVFSEKQLPDKKIRNFKKSVAKPASMVNRHLSSANS 382
BLAST of mRNA_H-elongata_contig688.14517.1 vs. uniprot
Match: A0A6H5JSI3_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI3_9PHAE) HSP 1 Score: 226 bits (577), Expect = 4.310e-61 Identity = 119/258 (46.12%), Postives = 168/258 (65.12%), Query Frame = 3
Query: 210 DFDSTEKSLAIEAKYPGCSVIPLSNLKMDQEGIDNGDVTSL------------SASLYFFWDEDHYNTYNRTVA----GSNINTQFVKVFFIDLENNVEAIGENIVDAKLPYERVIVTRNTDIATIKNHMVLTMTEFVGISSTSGKEKKAERTFAQSTTSAPQNWYWLGESKNITLSFMTLDVTIGKFEYTRIVEVDPVNGWTIIGSIGGIWQFVVLGFGMFFVYAEKQPPDMKILNMRKTIFKPARIITNVLSNVSS 935
+ ++ E SLAI+ YP C V+P S L ++Q GIDNGD+ +AS WDED ++ ++ V G +INTQFV +FF+D++ VEAIGE + DAKLPY R+ T N + +HMV+ MT+F IS++SG+++ +RTF QS+TSA NWY N L+ + ++ I KFEYT I +VDPV+GW IIG+IGG+WQFVV+ FG+FFV++EKQ PD KI N +K++ KPA ++ LS+ SS
Sbjct: 158 ELEADEASLAIQEAYPHCRVLPTSKLTVNQTGIDNGDINHFYATFGVGGDGRDNASCALLWDEDPHDDFDPAVELASRGVSINTQFVNLFFVDVDLGVEAIGEELTDAKLPYNRLSPTTNGSMVGTMSHMVIEMTQFQPISTSSGEKQDPQRTFTQSSTSATVNWY--NPDFNEELAALLFNMFIPKFEYTSIEQVDPVDGWAIIGAIGGVWQFVVIAFGLFFVFSEKQLPDKKIRNFKKSVAKPASMVKRHLSSASS 413
BLAST of mRNA_H-elongata_contig688.14517.1 vs. uniprot
Match: A0A6H5JZ12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ12_9PHAE) HSP 1 Score: 217 bits (552), Expect = 4.040e-57 Identity = 130/338 (38.46%), Postives = 189/338 (55.92%), Query Frame = 3
Query: 12 IIYDTVMSRANPASNIEIKQNVFQLPDMAFCVSYLEGCLDLGGTCFNPDWTPWYLNGLDGFLYDMNDF--DSTEKSLAIEAKYPGCSVIPLSNLKMDQEGIDNGDVTSLSASLY------------------FFWDEDHYNTYNRTVAGSNINTQFVKVFFIDLENNVEAIGENIVDAKLPYERVIVTRNTDIATIKNHMVLTMTEFVGISSTSGKEKKAERTFAQSTTSAPQNWYWLGESKNITLSFMTLDVTIGKFEYTRIV------EVDPVNGWTIIGSI-GGIWQFVVLGFGMFFVYAEKQPPDMKILNMRKTIFKPARIITNVLSNVSSNSS 944
II +T+ SR +PAS+IE+KQ ++ PD+ FC + GCL + +GF D++ F D+ + + AIE ++P C V PLS L +D++GI++GDV SL AS Y F W E +T++R A NIN QF+ + ID+E VE + VD KLPY R+ +T+ I NHMV+ +TEF GI +E++ +RT++QSTT+ QNWYW E+ + + M +DV+I KFEYT I + V+ W + +FVV GFG+FFV++ KQ PD K+ N RK++ KPA I+ LS + S SS
Sbjct: 77 IILETLESRKDPASSIELKQEHYEFPDIMFCTEFTNGCLXXXXXXXXX--AVGAIASAEGFTDDLDTFLDDNADATSAIEEEFPHCRVFPLSRLTIDEDGINSGDVDSLYASFYVREKKRAGQSEAASDGEQFLWYESA-DTFDR--ATYNINAQFLSTYLIDVEAGVEPLEGKSVDVKLPYARIEPITDTEFTAIANHMVVGLTEFAGIDDNGNREER-QRTYSQSTTTGTQNWYWTDETYDFEFALMIVDVSIPKFEYTFIAVSMNQRSKEEVSPWFALPPFKDSAAEFVVTGFGLFFVFSVKQSPDRKMRNFRKSVTKPASIVNKRLSTLGSRSS 408
BLAST of mRNA_H-elongata_contig688.14517.1 vs. uniprot
Match: A0A6H5JBE8_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE8_9PHAE) HSP 1 Score: 157 bits (397), Expect = 2.920e-36 Identity = 122/410 (29.76%), Postives = 178/410 (43.41%), Query Frame = 3
Query: 9 YIIYDTVMSRANPASNIEIK------------------------------------------------QNVFQLPDMAFCVSYLEGCLDLGGTCFNPDWTPWYLNG------------------------LDGFL-YDMN-DFDSTEKSLAIEAKYPGCSVIPLSNLKMDQEGIDNGDVTSLSASLYF-----------FWDEDHYNTYNRTVAGSN-----------------INTQFVKVFFIDLENNVEAIGENIVDAKLPYERVIVTRNTDIATIKNHMVLTMTEFVGISSTSGKEKKAERTFAQSTTSAPQNWYWLGESKN-ITLSFMTLDVTIGKFEYTRIVEVDPVNGWTIIGSIGGIWQFVVLGFGMFFVYAEKQPPDMKILNMRKTIFKPARIITNVLSNV 929
YII++T+ SR +PAS+IE+K Q + PD+A C ++ +GCLD CF N + GFL YD N D S E YP C +PLS + +D+ G+ NG VTS S + Y W + YN SN IN QF+ ++ I +++E+ VDAK+PY R+ +T +T NHMVL++TEF GI+ KE+K ER+F+Q+ + ++W+W E N + F ++++IGKFE+T I EV +FVV GFG+FFV++E+Q PD + N RK+I KPA N LS++
Sbjct: 27 YIIWETIESRKDPASSIELKYKKARDVYMTELGKIEGTFREISEAWNSQEKSVPVMGHGKWVRGRLLSQEYYTFPDVALCTTFGKGCLDYDNDCFEDRSFASAFNQTAARPTVPRSFACRVGLTNAPMIIIQGFLDYDQNFTADYAYVSEPFEEVYPNCKFVPLSMMTVDETGVKNGSVTSFSTAFYVRIPVQSAGLVVAWVDRRYNRAWVWCIRSNQVLWDEKGTYYDHSYYLINRQFLDLYLIPPGSSIESFTSASVDAKVPYSRLNLTTDTAFEATINHMVLSLTEFTGINKNGNKEEK-ERSFSQTAITGVEHWWWGYEDYNSVEFGFFMVELSIGKFEFTSI-EV----------------EFVVTGFGLFFVFSERQSPDRRFRNFRKSIRKPAEFAGNRLSSL 418 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig688.14517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig688.14517.1 >prot_H-elongata_contig688.14517.1 ID=prot_H-elongata_contig688.14517.1|Name=mRNA_H-elongata_contig688.14517.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=506bp MSRANPASNIEIKQNVFQLPDMAFCVSYLEGCLDLGGTCFNPDWTPWYLNback to top mRNA from alignment at H-elongata_contig688:1539..16645+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig688.14517.1 ID=mRNA_H-elongata_contig688.14517.1|Name=mRNA_H-elongata_contig688.14517.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=15107bp|location=Sequence derived from alignment at H-elongata_contig688:1539..16645+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig688:1539..16645+ >mRNA_H-elongata_contig688.14517.1 ID=mRNA_H-elongata_contig688.14517.1|Name=mRNA_H-elongata_contig688.14517.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3036bp|location=Sequence derived from alignment at H-elongata_contig688:1539..16645+ (Himanthalia elongata Himel1 dioecious)back to top |