mRNA_H-elongata_contig68687.14505.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68687.14505.1
Unique NamemRNA_H-elongata_contig68687.14505.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68687.14505.1 vs. uniprot
Match: A0A6H5K633_9PHAE (Clu domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K633_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 7.140e-44
Identity = 82/115 (71.30%), Postives = 96/115 (83.48%), Query Frame = 1 
Query:    1 MAQEYKRKRDDLFDLAAKEREDILERTEKPLRIGAMCGSKRSKSGRNFFHGSLCHIAVYLRALPIDTIRAHHFACEQSTVLESNRLYALAGTKFQAALALAPDDMGIISSYAQSV 345
            +A++YKRKRDDL DL A+E E+I  R EKPLR+GAMC  KRSK+GRNFF G LCH+AVYL ALP+DT+RAHHFA  Q+T  ES+RLY LAG KFQAALA+APDD+ IIS YAQSV
Sbjct: 1697 VAEKYKRKRDDLQDLVAQELEEICGRAEKPLRVGAMCRCKRSKTGRNFFSGDLCHVAVYLSALPVDTVRAHHFAGVQATARESDRLYMLAGVKFQAALAVAPDDIEIISRYAQSV 1811
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BLAST of mRNA_H-elongata_contig68687.14505.1 vs. uniprot
Match: D7FVD1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVD1_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 2.470e-43
Identity = 81/115 (70.43%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:    1 MAQEYKRKRDDLFDLAAKEREDILERTEKPLRIGAMCGSKRSKSGRNFFHGSLCHIAVYLRALPIDTIRAHHFACEQSTVLESNRLYALAGTKFQAALALAPDDMGIISSYAQSV 345
            +A++YKRKRDD  DL A+E E+I  R EKPLR+GAMC  KRSK+GRNFF G LCH+AVYL ALP+DT+RAHHFA  Q+T  ES+RLY LAG KFQAALA APDD+ IIS YAQSV
Sbjct: 1794 VAEKYKRKRDDFQDLVAQELEEICGRAEKPLRVGAMCRCKRSKTGRNFFSGDLCHVAVYLSALPVDTVRAHHFAGVQATATESDRLYMLAGAKFQAALAFAPDDIEIISRYAQSV 1908
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68687.14505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K633_9PHAE7.140e-4471.30Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FVD1_ECTSI2.470e-4370.43Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68687contigH-elongata_contig68687:1027..1371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.5
Seed ortholog evalue3e-38
Seed eggNOG ortholog2880.D7FVD1
KEGG koko:K10268
EggNOG free text desc.modulation by host of viral RNA genome replication
EggNOG OGsKOG4341@1,KOG4341@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931081.3125138-CDS-H-elongata_contig68687:1026..13711622931081.3125138-CDS-H-elongata_contig68687:1026..1371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68687 1027..1371 -
1691679690.2367327-CDS-H-elongata_contig68687:1026..13711691679690.2367327-CDS-H-elongata_contig68687:1026..1371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68687 1027..1371 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68687.14505.1prot_H-elongata_contig68687.14505.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68687 1027..1371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68687.14505.1

>prot_H-elongata_contig68687.14505.1 ID=prot_H-elongata_contig68687.14505.1|Name=mRNA_H-elongata_contig68687.14505.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MAQEYKRKRDDLFDLAAKEREDILERTEKPLRIGAMCGSKRSKSGRNFFH
GSLCHIAVYLRALPIDTIRAHHFACEQSTVLESNRLYALAGTKFQAALAL
APDDMGIISSYAQSV
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mRNA from alignment at H-elongata_contig68687:1027..1371-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68687.14505.1 ID=mRNA_H-elongata_contig68687.14505.1|Name=mRNA_H-elongata_contig68687.14505.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=345bp|location=Sequence derived from alignment at H-elongata_contig68687:1027..1371- (Himanthalia elongata Himel1 dioecious)
ATGGCTCAGGAGTACAAGCGCAAGCGCGACGATCTCTTCGATTTGGCTGC
AAAGGAGCGCGAAGATATATTGGAACGTACTGAAAAGCCCCTGCGAATCG
GTGCCATGTGTGGCTCCAAGCGATCGAAAAGCGGTCGGAATTTTTTTCAC
GGCAGTCTTTGCCACATTGCTGTGTATCTACGGGCGCTTCCTATCGACAC
GATCAGGGCACACCATTTTGCGTGTGAACAATCCACCGTCTTAGAGAGTA
ATCGTCTGTATGCTCTGGCCGGAACAAAATTCCAAGCAGCTTTGGCATTG
GCCCCTGACGACATGGGTATAATATCGAGCTACGCGCAGAGCGTC
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Coding sequence (CDS) from alignment at H-elongata_contig68687:1027..1371-

>mRNA_H-elongata_contig68687.14505.1 ID=mRNA_H-elongata_contig68687.14505.1|Name=mRNA_H-elongata_contig68687.14505.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig68687:1027..1371- (Himanthalia elongata Himel1 dioecious)
ATGGCTCAGGAGTACAAGCGCAAGCGCGACGATCTCTTCGATTTGGCTGC
AAAGGAGCGCGAAGATATATTGGAACGTACTGAAAAGCCCCTGCGAATCG
GTGCCATGTGTGGCTCCAAGCGATCGAAAAGCGGTCGGAATTTTTTTCAC
GGCAGTCTTTGCCACATTGCTGTGTATCTACGGGCGCTTCCTATCGACAC
GATCAGGGCACACCATTTTGCGTGTGAACAATCCACCGTCTTAGAGAGTA
ATCGTCTGTATGCTCTGGCCGGAACAAAATTCCAAGCAGCTTTGGCATTG
GCCCCTGACGACATGGGTATAATATCGAGCTACGCGCAGAGCGTCATGGC
TCAGGAGTACAAGCGCAAGCGCGACGATCTCTTCGATTTGGCTGCAAAGG
AGCGCGAAGATATATTGGAACGTACTGAAAAGCCCCTGCGAATCGGTGCC
ATGTGTGGCTCCAAGCGATCGAAAAGCGGTCGGAATTTTTTTCACGGCAG
TCTTTGCCACATTGCTGTGTATCTACGGGCGCTTCCTATCGACACGATCA
GGGCACACCATTTTGCGTGTGAACAATCCACCGTCTTAGAGAGTAATCGT
CTGTATGCTCTGGCCGGAACAAAATTCCAAGCAGCTTTGGCATTGGCCCC
TGACGACATGGGTATAATATCGAGCTACGCGCAGAGCGTC
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