mRNA_H-elongata_contig6838.14465.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6838.14465.1
Unique NamemRNA_H-elongata_contig6838.14465.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig6838.14465.1 vs. uniprot
Match: D8LHT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHT4_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 7.380e-75
Identity = 133/286 (46.50%), Postives = 180/286 (62.94%), Query Frame = 2 
Query:    2 IYVHSPNSTSVPTYCTVYNHLVKSGGTSIKEQLIEGSRREGSRPPGLCISDGSTSTSIEACDTALRNSSVIMGYGELLRNPLRAEGRECQWFTMMRHPIDQLVSAFYYCPK-HDVQRRPLELCGGYRDTQEPLNQRLVKFARSHWTNMTYRQMLHSIFCQPWFELCPPNIARYWHQRPFNINTAEGRETLTKIQGIMRTYTAIGIFAHWKLSMDLFDATIESPVRQWNHLVAYNQGFQSHERRILLKWAMVDPEIHSILSADLLIYNYGMFVFKNQTRKALGTRWE 856
            IY  +   T  PTYCT+++H+VK+GGT++++QLI  S  +G   PGLC+   S   S EAC  AL +SSVIMGY ELLR+P+   GR C +FTMMRHPID+LVSAFYYCP  HD Q RP + CGG+    +PL  RL+ FAR  W      Q+  + +C P    C  ++     + P ++N  E    L   + ++ +YTA+GIF  W+LSM+LFDA I SPV+QW    A N G +S ER +LL+WA   PEI   +  DLL+Y+  + +FK QT +ALGT W+
Sbjct:   15 IYTRASMDTDPPTYCTMFHHMVKNGGTAVRDQLILASEIQGRDVPGLCVIGPS---SAEACLDALHHSSVIMGYVELLRDPMEELGRRCDYFTMMRHPIDRLVSAFYYCPTFHDKQVRPNKWCGGHSHP-DPLTSRLLDFAREDWMCKAMFQLSFASYCPPG-AFCEHDMVE---EPPTHLNGVEDWSLLAVAEDVLLSYTAVGIFEEWELSMELFDAVISSPVQQWGGEEAVNPGPKSSEREMLLRWAHSSPEIRQAVGGDLLLYDLALSIFKRQTAEALGTVWK 292
[Close]
BLAST of mRNA_H-elongata_contig6838.14465.1 vs. uniprot
Match: A0A6H5JT23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT23_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 6.440e-71
Identity = 122/276 (44.20%), Postives = 172/276 (62.32%), Query Frame = 2 
Query:   35 PTYCTVYNHLVKSGGTSIKEQLIEGSRREGSRPPGLCISDGSTSTSIEACDTALRNSSVIMGYGELLRN--PLRAEGRECQWFTMMRHPIDQLVSAFYYCPK-HDVQRRPLELCGGYRDTQEPLNQRLVKFARSHWTNMTYRQMLHSIFCQPWFELCPPNIARYWHQRPFNINTAEGRETLTKIQGIMRTYTAIGIFAHWKLSMDLFDATIESPVRQWNHLVAYNQGFQSHERRILLKWAMVDPEIHSILSADLLIYNYGMFVFKNQTRKALGTRW 853
            P YCTV++H+VKSGG++IK  L   SR  G   PG C++ G     I +C  A  +S+VIMGY EL+R   PL A  R+C++FT++RHP+D+LVSAF+YCP  HD+Q RP + CG Y D   P   RL++FA+ HW NM Y+QM   ++C P   +C         +    ++   G + L K++ I+  YTA+GI  HW LSM LF+A + SPVR WN  V  N G  S  R  +L+WA   P IH +++ DLL+Y++ + +FK QT ++LGT W
Sbjct:   38 PEYCTVFHHMVKSGGSTIKHNLHISSRAAGGPRPGSCVAGGGKR--INSCKEAFNSSAVIMGYAELMRQDGPLEAVRRDCEYFTLLRHPVDRLVSAFFYCPTDHDLQLRPPKWCG-YADDPLPATDRLLEFAQQHWKNMAYKQMTFGMYC-PHGLICEATEV----ETAPGLDEPHGLDVLQKVEDILSGYTAVGIMEHWDLSMQLFNARVRSPVRDWNMTVRSNAGLPSELRDEVLQWAHDSPVIHRLMATDLLLYSFALSIFKRQTTESLGTNW 305
[Close]
BLAST of mRNA_H-elongata_contig6838.14465.1 vs. uniprot
Match: A0A6H5L5I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I1_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 2.450e-67
Identity = 117/276 (42.39%), Postives = 170/276 (61.59%), Query Frame = 2 
Query:   35 PTYCTVYNHLVKSGGTSIKEQLIEGSRREGSRPPGLCISDGSTSTSIEACDTALRNSSVIMGYGELLRN--PLRAEGRECQWFTMMRHPIDQLVSAFYYCPK-HDVQRRPLELCGGYRDTQEPLNQRLVKFARSHWTNMTYRQMLHSIFCQPWFELCPPNIARYWHQRPFNINTAEGRETLTKIQGIMRTYTAIGIFAHWKLSMDLFDATIESPVRQWNHLVAYNQGFQSHERRILLKWAMVDPEIHSILSADLLIYNYGMFVFKNQTRKALGTRW 853
            P YCTV++H+VKSGG++I           G   PGLC++ G   T+  +C  A  +S+VIMGY E +R   PL A  ++C++FT++RHP+D+LVSAF+YCPK HDVQ RP + CG Y D   P   RL+ +A+ +W NM Y+QM   ++C P   +C     R     P  ++   G + L K++ I+  YTA+GI  HW LSM LF+A + SPVR+WN     N G  S  R  +L+WA   P +H +++ D+L+Y++ + +FK QT +ALGT W
Sbjct:   38 PEYCTVFHHMVKSGGSTIXXXXXXXXXSAGDPRPGLCVAGGGEKTN--SCKEAFNSSAVIMGYAEAMRQDVPLEAVRKDCEYFTLLRHPVDRLVSAFFYCPKEHDVQSRPPKWCG-YADHPLPATDRLLDYAQQYWKNMAYKQMAFGMYC-PHGLICEATEVR---TAP-GLDEPHGLDVLQKVEDILSRYTAVGIMEHWDLSMQLFNARVRSPVREWNITQHSNAGLPSELRDEVLQWAHDSPVVHRLIATDMLLYSFALSIFKRQTTEALGTNW 305
[Close]
BLAST of mRNA_H-elongata_contig6838.14465.1 vs. uniprot
Match: A0A6H5JT32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT32_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 9.770e-66
Identity = 118/278 (42.45%), Postives = 177/278 (63.67%), Query Frame = 2 
Query:   35 PTYCTVYNHLVKSGGTSIKEQLIEGSRREGSRPPGLCISDGSTSTSIEACDTALRNSSVIMGYGELLRNPLRAEGRECQWFTMMRHPIDQLVSAFYYCPKH-DVQRRPLELCGGYRDTQEPLNQRLVKFARSHWTNMTYRQMLHSIFCQP--WFELCPPNIARYWHQRPFNINTAEGRETLTKIQGIMRTYTAIGIFAHWKLSMDLFDATIESPVRQWNHLVAYNQGFQSHERRILLKWAMVDPEIHSILSADLLIYNYGMFVFKNQTRKALGTRWET 859
            P YCT++NH+VKSGG++IK++L   ++ +G   P +C++        ++C  A+ ++ VI+GY ELLR PL   GREC++FT+MRHPID+L+SAF+YCP + DVQ RP + CG Y +  +P+  RLV+FA+  W N  +RQM   ++C P  + E   P   +  H+         G   L +I+ I+ TYTA+GI  +W LSM LF+A + SPV  W  +   N+G +S  R  + +WA + PEIH +++ D+L+Y+Y + VFK QT  +LGT WET
Sbjct:  125 PEYCTLFNHMVKSGGSTIKDKLDIAAKADGVDGPAMCVNGVGYE---DSCLKAMHSAPVIVGYAELLRYPLEVIGRECEYFTVMRHPIDRLLSAFFYCPAYGDVQDRPPKWCG-YANDPQPVTDRLVEFAKYGWKNKAFRQMTFGLYCPPNAFCEQAEPGAQQAVHE-------PGGWILLEQIEAILATYTAVGILEYWDLSMQLFNARVTSPVWDWEDMEHSNRGQRSGLRDEVHRWAHMSPEIHRVMATDMLLYDYSVSVFKLQTSASLGTIWET 391
[Close]
BLAST of mRNA_H-elongata_contig6838.14465.1 vs. uniprot
Match: D7G5K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K0_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 5.670e-63
Identity = 114/274 (41.61%), Postives = 164/274 (59.85%), Query Frame = 2 
Query:   35 PTYCTVYNHLVKSGGTSIKEQLIEGSRREGSRPPGLCISDGSTSTSIEACDTALRNSSVIMGYGELLRNPLRAEGRECQWFTMMRHPIDQLVSAFYYCPK-HDVQRRPLELCGGYRDTQEPLNQRLVKFARSHWTNMTYRQMLHSIFCQPWFELCPPNIARYWHQRPFNINTAEGRETLTKIQGIMRTYTAIGIFAHWKLSMDLFDATIESPVRQWNHLVAYNQGFQSHERRILLKWAMVDPEIHSILSADLLIYNYGMFVFKNQTRKALGTRW 853
            P YCTV++H+VKS G+++K  L   +R EG   P +CI +G   T  +AC  A+ +S++I GY EL+R PL    REC +FTM+RHPID+LVSAF+YCP  HDVQ RP + CG + +   P  +RL+ FA+  W N  ++QM   ++C P    C         + P  ++     + L ++Q  +  YTA+GI  HW LSM LF+A + SPVR+WN     N G  S  R  +L+WA   P IH ++  D+L+Y + + +FK QT  +LGT W
Sbjct:  144 PEYCTVFHHMVKSAGSTVKSLLHRATRNEGLPRPAVCI-NGHART--DACLEAINSSAIITGYAELIRYPLEVNRRECDYFTMLRHPIDRLVSAFFYCPTDHDVQLRPRKWCG-HAEHPVPATERLLDFAQESWQNKAFKQMTFGLYCPP-DTFCDEAEV----ESPQMLDEPGMLDILQQVQNTLAGYTAVGIMEHWDLSMQLFNARVRSPVREWNMFKQRNPGVMSGLRDEVLQWAHESPAIHRVIGTDMLLYYFALSIFKQQTTASLGTNW 408
[Close]
BLAST of mRNA_H-elongata_contig6838.14465.1 vs. uniprot
Match: A0A6H5K0M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0M4_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 8.100e-53
Identity = 96/228 (42.11%), Postives = 138/228 (60.53%), Query Frame = 2 
Query:  179 ACDTALRNSSVIMGYGELLRN--PLRAEGRECQWFTMMRHPIDQLVSAFYYCPK-HDVQRRPLELCGGYRDTQEPLNQRLVKFARSHWTNMTYRQMLHSIFCQPWFELCPPNIARYWHQRPFNINTAEGRETLTKIQGIMRTYTAIGIFAHWKLSMDLFDATIESPVRQWNHLVAYNQGFQSHERRILLKWAMVDPEIHSILSADLLIYNYGMFVFKNQTRKALGTRW 853
            AC  A+ +S++I GY EL+R   PL  E RECQ+FTM+RHPID+LVSAF+YCP  HDVQ RP + CG + +   P  +RL+ FA+  W N  ++QM   ++C P    C           P  ++     + L ++Q I+  YTA+GI  HW LS+ LF+A + SPVR+WN     N G  +  R  +L+WA   P IH ++  D+L+Y++G+ +FK QT  +LGT W
Sbjct:   32 ACLEAINSSAIITGYAELIRRVYPLEVERRECQYFTMLRHPIDRLVSAFFYCPTDHDVQLRPRKWCG-HEEHPVPATERLLDFAQESWRNQAFKQMTFGLYCPP-DTFCEEAEV----DSPQMLDEPGILDVLQQVQDILAGYTAVGIMEHWDLSIQLFNARVRSPVREWNVSKQRNPGVMTRLRDEVLQWAHKSPAIHRVIGTDMLLYSFGLSIFKQQTTASLGTNW 253
[Close]
BLAST of mRNA_H-elongata_contig6838.14465.1 vs. uniprot
Match: A0A6H5JUF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUF0_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 2.400e-47
Identity = 88/222 (39.64%), Postives = 127/222 (57.21%), Query Frame = 2 
Query:  242 PLRAEGRECQWFTMMRHPIDQLVSAFYYCPK-HDVQRRPLELCGGYRDTQEPLNQRLVKFARSHWTNMTYRQMLHSIFCQP--WFELCPPNIARYWHQRPFNINTAEGR---------------ETLTKIQGIMRTYTAIGIFAHWKLSMDLFDATIESPVRQWNHLVAYNQGFQSHERRILLKWAMVDPEIHSILSADLLIYNYGMFVFKNQTRKALGTRW 853
            PL  E RECQ+FTM+RHPID+LVSAF+YCP  HDVQ RP + CG + +   P  +RL+ FA+  W N  ++QM   ++C P  + E+   N           + + +G                + L ++Q I+  YTA+GI  HW LSM LF+A + SPVR+WN     N G  +  R  +L+WA   P IH ++  D+L+Y++G+ +FK QT  +LGT W
Sbjct:    6 PLEVERRECQYFTMLRHPIDRLVSAFFYCPTDHDVQLRPRKWCG-HEEHPVPATERLLDFAQESWRNQAFKQMTFGLYCPPDTFCEVAEVNNVSQCETFVVGVGSLDGLREVGPPQMLDEPGILDVLQQVQDILAGYTAVGIMEHWDLSMQLFNARVRSPVREWNVFKQRNPGVMTGLRDEVLQWAHKSPAIHRVIGTDMLLYSFGLSIFKQQTTASLGTNW 226
[Close]
BLAST of mRNA_H-elongata_contig6838.14465.1 vs. uniprot
Match: A0A6H5J534_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J534_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 3.820e-27
Identity = 68/150 (45.33%), Postives = 93/150 (62.00%), Query Frame = 2 
Query:   35 PTYCTVYNHLVKSGGTSIKEQLIEGSRREGSRPPGLCISDGSTSTSIEACDTALRNSSVIMGYGELLRNPLRAEGRECQWFTMMRHPIDQLVSAFYYCPK-HDVQRRPLELCGGYRDTQEPLNQRLVKFARSHWTNMTYRQMLHSIFCQP 481
            P YCTV++H+VKS G++IK+ L + SR  G   PG     G+T      C TA  +    +G     R PL A  + C++FT+MRHPID+LVSAF+YCPK HD+Q RP + CG Y D Q P+  RL+ F   +W NM Y+QM + ++C P
Sbjct:  586 PEYCTVFHHMVKSAGSTIKDNLYKSSRIAGVPRPG-----GTT-----RCATACHSIPFPLGRA---RVPLEAVRKGCEYFTLMRHPIDRLVSAFFYCPKDHDLQLRPRKWCG-YADHQVPVTDRLLDFTEHYWQNMAYKQMAYGMYCPP 721
[Close]
BLAST of mRNA_H-elongata_contig6838.14465.1 vs. uniprot
Match: D7FUF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF7_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 2.050e-26
Identity = 53/141 (37.59%), Postives = 83/141 (58.87%), Query Frame = 2 
Query:  431 WTNMTYRQMLHSIFCQPWFELCPPNIARYWHQRPFNINTAEGRETLTKIQGIMRTYTAIGIFAHWKLSMDLFDATIESPVRQWNHLVAYNQGFQSHERRILLKWAMVDPEIHSILSADLLIYNYGMFVFKNQTRKALGTRW 853
            W N+ ++QM + ++C P   +C           P  ++   G + L +++ I+  Y A+GI  HW LSM+LF+A + SPVR+WN     N G  S  R  +L+WA  +P IH +L AD+L+Y++ + +FK QT +ALGT W
Sbjct:    2 WQNLAFKQMTYGLYCPP-EAIC----GEMQLDAPQMVDEPGGLDLLQQVEDILAGYAAVGIMEHWGLSMELFNARVRSPVREWNRFKQKNPGVTSGLRDQVLQWAHENPAIHRVLGADMLLYSFALSIFKQQTAEALGTNW 137
[Close]
BLAST of mRNA_H-elongata_contig6838.14465.1 vs. uniprot
Match: A0A6H5JQY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY1_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.620e-25
Identity = 52/104 (50.00%), Postives = 72/104 (69.23%), Query Frame = 2 
Query:  179 ACDTALRNSSVIMGYGELLRN--PLRAEGRECQWFTMMRHPIDQLVSAFYYCPK-HDVQRRPLELCGGYRDTQEPLNQRLVKFARSHWTNMTYRQMLHSIFCQP 481
            AC  A+ +S++I GY EL+R   PL  E REC++FTM+RHPID+LVSAF+YCP  HDVQ RP + CG + +   P  +RL+ FA+  W NM ++QM   ++C P
Sbjct:   32 ACLEAINSSAIITGYAELIRRVYPLEVERRECEYFTMLRHPIDRLVSAFFYCPTDHDVQLRPRKWCG-HEEHPVPATERLLDFAQESWQNMAFKQMTFGLYCPP 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6838.14465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D8LHT4_ECTSI7.380e-7546.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JT23_9PHAE6.440e-7144.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5I1_9PHAE2.450e-6742.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT32_9PHAE9.770e-6642.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5K0_ECTSI5.670e-6341.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0M4_9PHAE8.100e-5342.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUF0_9PHAE2.400e-4739.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J534_9PHAE3.820e-2745.33Integrase catalytic domain-containing protein n=1 ... [more]
D7FUF7_ECTSI2.050e-2637.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQY1_9PHAE2.620e-2550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6838contigH-elongata_contig6838:2623..10448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue2.5e-12
Seed eggNOG ortholog2880.D7G715
EggNOG free text desc.Sulfotransferase family
EggNOG OGs2CYGC@1,2S47N@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons7
Model size2529
Cds size681
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931077.1575804-UTR-H-elongata_contig6838:2622..27591622931077.1575804-UTR-H-elongata_contig6838:2622..2759Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6838 2623..2759 +
1691679688.4548905-UTR-H-elongata_contig6838:2622..27591691679688.4548905-UTR-H-elongata_contig6838:2622..2759Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6838 2623..2759 +
1622931077.1714582-UTR-H-elongata_contig6838:3853..39301622931077.1714582-UTR-H-elongata_contig6838:3853..3930Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6838 3854..3930 +
1691679688.4651349-UTR-H-elongata_contig6838:3853..39301691679688.4651349-UTR-H-elongata_contig6838:3853..3930Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6838 3854..3930 +
1622931077.2803018-UTR-H-elongata_contig6838:8814..104481622931077.2803018-UTR-H-elongata_contig6838:8814..10448Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6838 8815..10448 +
1691679688.546395-UTR-H-elongata_contig6838:8814..104481691679688.546395-UTR-H-elongata_contig6838:8814..10448Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6838 8815..10448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931077.1906962-CDS-H-elongata_contig6838:3930..39531622931077.1906962-CDS-H-elongata_contig6838:3930..3953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6838 3931..3953 +
1691679688.4742393-CDS-H-elongata_contig6838:3930..39531691679688.4742393-CDS-H-elongata_contig6838:3930..3953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6838 3931..3953 +
1622931077.2024584-CDS-H-elongata_contig6838:4449..45461622931077.2024584-CDS-H-elongata_contig6838:4449..4546Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6838 4450..4546 +
1691679688.4833415-CDS-H-elongata_contig6838:4449..45461691679688.4833415-CDS-H-elongata_contig6838:4449..4546Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6838 4450..4546 +
1622931077.2158916-CDS-H-elongata_contig6838:4865..48921622931077.2158916-CDS-H-elongata_contig6838:4865..4892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6838 4866..4892 +
1691679688.4928744-CDS-H-elongata_contig6838:4865..48921691679688.4928744-CDS-H-elongata_contig6838:4865..4892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6838 4866..4892 +
1622931077.2315109-CDS-H-elongata_contig6838:5340..54901622931077.2315109-CDS-H-elongata_contig6838:5340..5490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6838 5341..5490 +
1691679688.5082371-CDS-H-elongata_contig6838:5340..54901691679688.5082371-CDS-H-elongata_contig6838:5340..5490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6838 5341..5490 +
1622931077.248071-CDS-H-elongata_contig6838:6452..65211622931077.248071-CDS-H-elongata_contig6838:6452..6521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6838 6453..6521 +
1691679688.5189662-CDS-H-elongata_contig6838:6452..65211691679688.5189662-CDS-H-elongata_contig6838:6452..6521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6838 6453..6521 +
1622931077.2628036-CDS-H-elongata_contig6838:8499..88141622931077.2628036-CDS-H-elongata_contig6838:8499..8814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6838 8500..8814 +
1691679688.528777-CDS-H-elongata_contig6838:8499..88141691679688.528777-CDS-H-elongata_contig6838:8499..8814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6838 8500..8814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6838.14465.1prot_H-elongata_contig6838.14465.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6838 3931..8814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6838.14465.1

>prot_H-elongata_contig6838.14465.1 ID=prot_H-elongata_contig6838.14465.1|Name=mRNA_H-elongata_contig6838.14465.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
MGYGELLRNPLRAEGRECQWFTMMRHPIDQLVSAFYYCPKHDVQRRPLEL
CGGYRDTQEPLNQRLVKFARSHWTNMTYRQMLHSIFCQPWFELCPPNIAR
YWHQRPFNINTAEGRETLTKIQGIMRTYTAIGIFAHWKLSMDLFDATIES
PVRQWNHLVAYNQGFQSHERRILLKWAMVDPEIHSILSADLLIYNYGMFV
FKNQTRKALGTRWETVSIQDSGVMTQ*
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mRNA from alignment at H-elongata_contig6838:2623..10448+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6838.14465.1 ID=mRNA_H-elongata_contig6838.14465.1|Name=mRNA_H-elongata_contig6838.14465.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7826bp|location=Sequence derived from alignment at H-elongata_contig6838:2623..10448+ (Himanthalia elongata Himel1 dioecious)
GATATACGTTCATAGTCCGAATAGCACGTCGGTGCCGACATATTGCACCG
TGTATAACCATTTGGTAAAGAGTGGGGGTACCAGCATCAAGGAGCAGCTG
ATCGAAGGCAGCAGGAGGGAAGGGTCTCGACCGCCAGGTTCGTCACGCTT
TTCCTCGGACGTTTTATCGACCCCTTGTTTTGGTTTGAGGGTAATCGTTA
ACGCCTAATGACGACTACATCTCCTAGTTGACCTAATGACGACTACATGT
CCTAGCCTTTGGGGGACGCGTGAAGCATGCGAGAGGACTCGCGCACATGT
TTATATGATGCTGCCCTTCCCAATATACAAGCGCTTTCTGTCCGGCTACG
CGGTGCGAAGTCGCTTTCCATGTCCTAATGTCTGATCACGGCCAGTCTGA
CATGAAAACATAACCTGGTACATAACCGTGTCTACATATCTTATTTACTC
CCGGTCTCCATACGCTCAAGTAGAAACATAGAACAAGAACCGGAAAAACA
AGCTCCTAAAATATATGAGGCGAAAATTGACAAGATCTTGTCCCTTGAGG
TTGTGACCAATTTTTCGTAAGCATCACAAGTACTAGTGTATTTGAATTTA
CCGAAGAGCAACTTGTACAACATATAGTAGCCTTCCGCCTTAAGGTAGTC
TGCTTTTGTGTGTGTATATGGTGTTTTAGTGTGTGCCTGGCTGCGAGTAT
GTCTTTGTCGCGGTATATATTTTTAGCTGGTTCCGCATGTTTATGTTTTG
CGCATCTCTTTGTTGCCGGTCCCGTCATCTCATGACATCATCTTGCGATA
TAACTCGGTTTGGGATTAAAATTCCCTGTCTTTATGATTCGGTTTGTAGG
TTCTAAATCGCTAGCGTGTCCCACCTCTGTTCATTGTTCTATTCTGTACT
CATCTTTTCTTCTTGTCTCATGGTATATTATGTCCATTTAATTATAGAAA
TATTCTATTTCCTTCAGGTCTATACTTTTCGCTGCAAGAGTAAGAAAGGG
AGGGTAAACCTGATACTTCCCTCGTAGATGTTTCAATAGCTGCTAAGAAT
GCCAGAGCATTTTAACTCTGGCGGGCAAGAACGCTTCGACATTTCCCGTC
TGCAAGTTCGACAGCAGCGTAGATTTGCGTCTCCATGTTGCTCCTGGGGC
AGCAGCGTCGAGAGCGCGTTGCTCAATGTATCCAACAGTTGCAGTGACAC
GGTTAGCCTGTGTCGATTTTTTCCTGTCCAGGGTTGTGCATATCCGACGG
ATCTACGTCGACCTCAATTGAAGCTTGCGACACAGCGCTTCGAAACTCTT
CAGTGATCATGGGTTACGGGGAACTGCTCAGGTGTGGGCTTCTCTAACCT
CACCTTCTACCTTCAACCTCACCTTCTATCACCGTGTCGACATCCCTCCT
CGTATACGTTGACGTACATCAGTATTGCAGTGCCCTTGACGACGTTTGCA
CCTGGCCCTTAGGAGGGCGGGGACGAAAAGAGGCATCATGCGCCGTGATT
ACATTCCGTTGGAACGTAGAATTTCGTTAGTTCCCCCTGCGTGCTCAATG
AGCATACGAAGAGCTCACGTGTAGGCGGGGTATCTGCAGGAACGCTCGTG
AGCCCTTCCCGCGTTAGAATGCCAGCTTCCGGTTGCATGCTGCCGTCTCC
CCTAAACAGCTGGCAAGTCATCTAATGGGTAGGGATTTTCAACACGCGAG
GCCAATCGAACAAAACTGCCTTAAACACTATTTTCGTGTTGCTAAAGAAC
TCCATACGCATCACGTGCTGCACTATAATACTAAATGTGCTTCATCACGC
ACCGTCTTCGTGAAATGCGATTGGCAGGAACCCTCTGAGAGCAGAGGGGA
GGGAGTGCCAATGGTTTACGATGATGCGACATCCTATCGATCAGCTTGTC
AGCGCTTTCTATTATTGTCCAAAGGTAAGGAAGGATGTTTGTCTGCCCTT
TCGGGGAACGAAACAATTTCACCTACAGCAAGCGGAAGGATGACGAGATA
CCGATATGCCCCCTCCCGTCCCCCGTGAATGCGTCAATCTAAGTTGTTGA
TATATGCTACTTTTCACGTCAGACGCGAAACAAATAGAGAAAACGTGTCA
GTGACCATCCGTGGATACTGATACATGGGTGATTGACATGTACTATATAA
ATATATTTAGAAATGCACGAACGCCGCTCAATTTTGTTTTGTGACAAATA
AATCTACGCCCCATTTCCGTCCGCCGACTTTCACCCTTTACAGCATGACG
TGCAGCGTCGACCGCTAGAGGTGAGCTACGTTTGTACCGTGTTGCCTTAT
GTCAAACCCAGAAGCGCTATGCAGTAGATAGACACGGTAGACCGACCTCG
TTGCAGTTGGAGCGGTGTATGGATTAGGGGAGCGAACCCTTCGTGTGATG
TCCCGCAGTTCCTTGGTAGTGTGATCTGCGGAGAGAGGGGCCTCGTCACA
CCTACCGTAAGGACCATGTGTGTAGAGATGGGGCCGCGAATAATTATTAA
TTGTGCATTTTGTCAAGTTGCGATTAATGGGACAAGCGTCGAAGAAATGA
TCACCATGATTGTTACCTTTGGTACCAGGAAAAGGATCAGTCAGCCAGCG
GAGGAAGGCGTACGTCTCTCTCGAGTTGTAGTGACACTTTCTTCTCTCGA
GCACTGTCGTGTGATGCTTCCATTTTCCAACAATTTACTCATCCTGTCGC
GTCACGACTCCCACGCAGTTGTGCGGAGGCTACCGAGATACGCAAGAACC
GTTGAATCAACGGCTGGTTAAGTTCGCGAGGTCGCACTGGACGAACATGA
CCTACAGGCAAATGCTGCACTCAATCTTTTGTCAACCCTGGTTCGAGCTC
TGCCCTCCCAACATTGCGGTGCGTTCTTGGCAGTTGGATGTTTTTTCGTG
ATTGTTCAGCTGTGCGTGGTAGAGCTACGAGGCGTGAAACGCCTCGAACA
GGGCGAGGTCGAGCCATCCCCTGGGTGGCGCATTACCCGTTGCGGTTTTG
ACCGAAACCTGTTTCTTTGAGCATCAACGGAACATAGGATCGAAGTCACT
CGGAGGCGTTGGCACCGAAGGGAGGAGCACGTAGCTAGTCTTGACAAATT
AGGTAGAACCAAAGTTGGGGGGGAAATCCTCCCCTATCCTTAGATAATTG
TATATAATCATTAAAAAACATATGAACTCATTAGAACCCTCCGAACATCC
ACACCTTCTCAGCACCGTGAGAGGTGTAGCCCAGGGGACCAACTATCGTC
AGGTTCTAATATGTACATTACTTCCTTGAGCACAAAACCGTCACACGTGA
TTAGTCATCCTATATGGGGACGTCAAACCAGAGCCTAGGGCGTGAATTGT
GTGTGGTGGTTAGGAAGGGTTAGGCACAACATTGTACATACGTCTCAGTT
AAATTGGGAGAGATAAAAAAGTTAAGAGGTTCAAAGACCACGGTTTACCA
GTATGCCAACCGAAACAGCAAGGTACGGACGTCAACAGATGTTCAGGGAA
CCCGCTCTTTGGATGACGTACGTTTTCCATCAATTCTTGAGTCCGCAATA
CGGAGGATGCTCGCGCGAAAATGTATGTACCCTTCTCAAAAGTACGGACG
GAATATCTTCAACGCCGAACTATTTATGTTGTTGGCCGTGTGGTTTGGAA
GATTCAATAGACTGGAATTATGTCAATTTTTGGGCCCAGGAGAGCGTTGT
TCTCCGAGCCTCGCGTACTTCAAGGGTGTGGATCGTGCCTTCGAGCCAGC
ATGTACTTCGATGGAATGACCCATACGGTGATGTCCGCGGTCGTGCTTTC
CTTGTTACCTTGTTTTGACGATTATCGCAGAGGTACTGGCACCAACGGCC
GTTCAATATCAATACAGCAGAAGGCAGAGAGACCCTCACCAAGATTCAGG
TGAGGGATGAGAGTGTAATCCAAATGACCCAGACTTTTATCTCGCTTGTG
ACTTTAGTGACACCGCGCCCCAGACACCTCGTCTACAGGACCCTTGTGTG
GAACTCTTCGAGTCCCAAACTCGGTGTGTCATGCGATCGTCTTTACGGAG
GTAATGCCACCGTTGGTAAATAAATTGAATCGATATCCCGAGCGAGCCAC
TGCTTCCATGGGCCACACCCCCCGTCGATCTCACTCTACAAATATGTTTA
AGTACACATCCGTGACATCCACCCTCGAGTCAGCGGGTTAGGACCCCTAC
TTTGCACGCCAAAGGCCATATCTGGGGTTCATTTTCTCCCACCCTTTGGC
TACTTGTTCACTCGGAACGAAAGGAAAAACTAACGAATATTTGATTGATA
CGTTGTCCTTCAAGACGAAGTCACGATCCAGCCACGAACTTTGTCGAAGA
CTTTGAGCGCGACGCTGGCGACAGGAATGAAAACTCATCCCCGTTTCGCC
GTGTTCACATGACTCGACTGCTTGTTCGATCTCCATCTACCATTTATTTC
GTTGTTCACTATTAATAATTTTATTTTAAAATATATGAACTCGTTCCAAC
CCTTCGAACATCCACACCTTCTTAGCATCGTGAGATGTGCAATCCAGAGA
ACCAACCATTATCAGGCTCGAATGTTTACATTACTCCCTTCGATCCAACC
AAAATAGTCCCTGCGCGTTTAGGTTGGTTTTATTCTGAATAGCGGGGCTA
TGAGCCAGATTTGTTTTCTTTTACATAAAAATATAAAAATACTGCTGCTC
TGTAAGTCCGAAGCCGAGAGGGCGGCGATATCAATTTCGATTTTGAAAAC
TCCTAAAGCTGCCTGAAGTGCTTCACCGCTGATGCAGTCGAATCAGGTTC
AAAGAACTACTCTAAACTTCCGTTTGAAGGAGTTGATTCGTCCTAGCTCA
GCTATCGAAGGACACCATTGGTGCCTTTACCATATGCATGTTGCTTTGCG
GATACACAGTTCAACTTTTATTCCTTCGGAATATGGAAGCTTCTTGTGGA
TGGGGAGGTTATCACCGCCACGTTCCCGAATTCTGGACGTAAAAATTCAC
CTCCCGGGGACATAATTTTTAATACCCAGGACCATTGGGATTTATTATTT
GTCCATTGAAGGCCATTGAAGGCTTATCGTGCAAAGAGACACAGTTAAGC
CCGTACGGAGGAGCTCTTTATGCCATTCCCGCTTGAATTCGGTGAAAAGT
TCGTCGGATCTACCTTTCCTTTTGTTGAATCACTTGGCGTTCTCCCCTCT
TAGGTGAGGGTGCGTGGGTGCCCCTAAAGCATGACAATCCAGCACCACAC
GAACTATCCAGCGATGGAAGGATGTAGGGAAAATTGCTCGATTTTGTTCC
ATTTTCGCCTTACTAAACTGGGGGACGTCTGAATAAATCTCCCCCCACCC
CCAACATTGTTTTACTGATATTTACAAAAACAAACATGATCTACACGTTA
CCATCGTTATTGTCGGTTCCCTATTTTTATTAAAAGACATATGAACCCAT
TCGAACCCTTCGAACATCCACGCCTTCTTAGCATCATGAGCGGTGAAGCC
CAGGGAACCAACTATCGTCAGGTCCGAATTTGGACATTTTAACTGCATCT
AAGCACAAACTCGTCATATATGATTCATTATATGGGGACGCCAAACCGTT
CTAAATCCGAATGTTCCCGTATCCGTATTATTTGTAACGTCTTAGCACAA
AGTCCCTCTTCGTTACTGGCAGAACAATCCGTGACGCTAAGAATTTAGTT
ACAAGCCCTCCAACGTAGGCACGAGGGCAACACGACGTGGTCGACTGCCC
TTGAAAATCGAGTTATAAGAACATAGTAAATGTTGAACTTATGAATGGGT
TTTTAACCGTCAACATCTCCATCCCTCTTATTTTCAATGGCCGGATTGCT
GCGTGTGGCAATCTCTCGTGTGTTTAGGGAATCATGCGAACTTACACAGC
TATCGGGATCTTCGCACACTGGAAGCTGTCCATGGATCTCTTCGACGCCA
CGATTGAAAGCCCGGTGCGACAATGGAACCATCTTGTAGCGTACAACCAA
GGATTTCAATCACATGAAAGACGGATACTCCTGAAGTGGGCTATGGTAGA
TCCCGAGATACACAGCATACTCTCGGCCGACTTGCTAATCTACAACTATG
GTATGTTTGTTTTCAAGAACCAGACGCGTAAAGCCCTCGGAACGAGGTGG
GAAACCGTCAGCATCCAGGACTCGGGCGTTATGACTCAGTAGGTCACATA
ATATGTAAATTCCTTACGTGTTGTTTTCTGCCTTTAGAGGCGCGCTCTCT
TTTTCTCTCCGATCTTTCTCTTTGCCCAGCCCAACGACGCAGTGTAGAAT
ATTTGATTGGTTAGGCGGAGAGAGCTATAAAATGCAGCGAAAACCGACTG
TGTGCCCTCGAAACTCTTCATTTCTTTCAACGTAGACGTTGGCCGGGAGG
CCATGGAGAAATGAAGCTTTAAGTGTCTGATCTTGATAAAAAATAGCTCA
GCATCAATTTTGATTCCTCGTCACGGCAAACATAAACGACGATGTAGTCA
AATGTTTCTTCACGTGGTGTTCGGAAGATTTCAAAGATCTGTCGTGGTCG
AGAGTTTTGCGTAATATACGTAATATGGCGTATTGGTTTAAGCTTCTCTT
CTCATTCGCGAGGCGGAGTCGCAAAACGAATTTCTGTAGATGATTTTATC
TTTTCCTTTTGTCCCCCAGACTTCATACCATAAGAGGCCACGTGTGAGAT
TATCAAACGCTGGTGCCAAAAGGCGAGCAATATAGTGTGGAGGAGTATGT
TTTTGACTCCCGGTTTCCAGGTGGGAAATATTGGCACTTGCAAAATGGCG
CTTCATAGAGTGTGGCTCCAGCTTAATCGCCAGCATCTCAGACGCTTGGC
TCCAAGACTCCATGCCTATACGAGCGCAGATTATATGATCCGATTGCGAC
CGGTGCTTGGTAATCCCATGCTTCGTAGTCATCATGTTTCTATTACAGTT
GAAGATGCGCAGCTGGTTTCGGGAACAAGCAGATCACATTGATAACAGTG
TGTCGGACGATATCTTAGATAATTCTTTGGCATTATAGTTGTAGGGGGAA
GCGACGTCGCTGCCACACGGCAACGTCGCTAACGTTAGGTGAAGCATGTG
GGAATGATATATTCAAATATATATTTAGACAAGAGGGGAGTCGGGATTCG
GCACAATATCCTATTGCCTGCGCGATAAACGTCAAATGCTGGGCGGTTCA
AAAGCTGGGCACAGCGTCCCGCTGCGACTCTTTTCCAACGAATGTTCGCG
CCCACCGGGATGCTTCCTCCGCATTGGTGTATCTTATGTATTCATTGCGC
TCAGCAGTCCAGCCTGTAACCTACTCCTTGTCAGAGTAGTGTAGGGATAA
CCACGTAGTCTAGTAATAATGCGGAAGTCATGTGGTCGATCCCACCAGAA
TGGTTATTTTTTATTTTGGTAGCGGTGAACGTGCGAACTGGGGTATATAA
GCAAATTTCAACCATTGGTCGACGAGGGGTAGGAGTGTTCTGAGCTTACA
TCGCGATAAAAAAAAACATAGGGAGGCGTTAACCACCTCGGGAGAGATGG
ATTTGTTTCCTTAGGGCCACATATTTTGATTCTGCGGCGGAAAGCGTTAC
AACCCTTCCTCGACGAGGTTGAAGAGTGCTGACCTTGCATCGCGAAGAGT
ATCGGAGGCGTGAACCGGGAAAACCTTAGGACCACATGTGGGAGATAGAG
ATGGGTTGACTCCTTATAAGCATAAGCTAGCCTCAAATGACGGAATGGTT
GAGATTGGTAACCTAGCATGTTGGAGGGCCGATCGGCAGGAAATAAAAAT
ATGAAAAACTAAACCGCACCACCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig6838:2623..10448+

>mRNA_H-elongata_contig6838.14465.1 ID=mRNA_H-elongata_contig6838.14465.1|Name=mRNA_H-elongata_contig6838.14465.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig6838:2623..10448+ (Himanthalia elongata Himel1 dioecious)
ATGGGTTACGGGGAACTGCTCAGATGGGTTACGGGGAACTGCTCAGGAAC
CCTCTGAGAGCAGAGGGGAGGGAGTGCCAATGGTTTACGATGATGCGACA
TCCTATCGATCAGCTTGTCAGCGCTTTCTATTATTGTCCAAAGGAACCCT
CTGAGAGCAGAGGGGAGGGAGTGCCAATGGTTTACGATGATGCGACATCC
TATCGATCAGCTTGTCAGCGCTTTCTATTATTGTCCAAAGCATGACGTGC
AGCGTCGACCGCTAGAGCATGACGTGCAGCGTCGACCGCTAGAGTTGTGC
GGAGGCTACCGAGATACGCAAGAACCGTTGAATCAACGGCTGGTTAAGTT
CGCGAGGTCGCACTGGACGAACATGACCTACAGGCAAATGCTGCACTCAA
TCTTTTGTCAACCCTGGTTCGAGCTCTGCCCTCCCAACATTGCGTTGTGC
GGAGGCTACCGAGATACGCAAGAACCGTTGAATCAACGGCTGGTTAAGTT
CGCGAGGTCGCACTGGACGAACATGACCTACAGGCAAATGCTGCACTCAA
TCTTTTGTCAACCCTGGTTCGAGCTCTGCCCTCCCAACATTGCGAGGTAC
TGGCACCAACGGCCGTTCAATATCAATACAGCAGAAGGCAGAGAGACCCT
CACCAAGATTCAGAGGTACTGGCACCAACGGCCGTTCAATATCAATACAG
CAGAAGGCAGAGAGACCCTCACCAAGATTCAGGGAATCATGCGAACTTAC
ACAGCTATCGGGATCTTCGCACACTGGAAGCTGTCCATGGATCTCTTCGA
CGCCACGATTGAAAGCCCGGTGCGACAATGGAACCATCTTGTAGCGTACA
ACCAAGGATTTCAATCACATGAAAGACGGATACTCCTGAAGTGGGCTATG
GTAGATCCCGAGATACACAGCATACTCTCGGCCGACTTGCTAATCTACAA
CTATGGTATGTTTGTTTTCAAGAACCAGACGCGTAAAGCCCTCGGAACGA
GGTGGGAAACCGTCAGCATCCAGGACTCGGGCGTTATGACTCAGTAGGGA
ATCATGCGAACTTACACAGCTATCGGGATCTTCGCACACTGGAAGCTGTC
CATGGATCTCTTCGACGCCACGATTGAAAGCCCGGTGCGACAATGGAACC
ATCTTGTAGCGTACAACCAAGGATTTCAATCACATGAAAGACGGATACTC
CTGAAGTGGGCTATGGTAGATCCCGAGATACACAGCATACTCTCGGCCGA
CTTGCTAATCTACAACTATGGTATGTTTGTTTTCAAGAACCAGACGCGTA
AAGCCCTCGGAACGAGGTGGGAAACCGTCAGCATCCAGGACTCGGGCGTT
ATGACTCAGTAG
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