mRNA_H-elongata_contig68336.14462.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68336.14462.1
Unique NamemRNA_H-elongata_contig68336.14462.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68336.14462.1 vs. uniprot
Match: D7G5I3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I3_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 7.690e-5
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 SFREISTQLEDLLTAGTATVFSKWLGNHLRGL-GKQKNPA 117
            + REI +QLEDLLTAGTAT F +WLG HLR L GK KN A
Sbjct:   82 TIREICSQLEDLLTAGTATEFCRWLGAHLRELEGKNKNAA 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68336.14462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5I3_ECTSI7.690e-570.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68336contigH-elongata_contig68336:406..2724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_000720.1
Exons3
Model size630
Cds size630
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68336.14462.1prot_H-elongata_contig68336.14462.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68336 406..2724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931076.854371-CDS-H-elongata_contig68336:405..7491622931076.854371-CDS-H-elongata_contig68336:405..749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68336 406..749 -
1691679688.3391988-CDS-H-elongata_contig68336:405..7491691679688.3391988-CDS-H-elongata_contig68336:405..749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68336 406..749 -
1622931076.8705664-CDS-H-elongata_contig68336:1965..21801622931076.8705664-CDS-H-elongata_contig68336:1965..2180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68336 1966..2180 -
1691679688.3488004-CDS-H-elongata_contig68336:1965..21801691679688.3488004-CDS-H-elongata_contig68336:1965..2180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68336 1966..2180 -
1622931076.8825715-CDS-H-elongata_contig68336:2653..27241622931076.8825715-CDS-H-elongata_contig68336:2653..2724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68336 2654..2724 -
1691679688.3590164-CDS-H-elongata_contig68336:2653..27241691679688.3590164-CDS-H-elongata_contig68336:2653..2724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68336 2654..2724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68336.14462.1

>prot_H-elongata_contig68336.14462.1 ID=prot_H-elongata_contig68336.14462.1|Name=mRNA_H-elongata_contig68336.14462.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=210bp
SFREISTQLEDLLTAGTATVFSKWLGNHLRGLGKQKNPASAPIEAAPANT
GGSRHHADGGATGSSSSKSRANPKSKSSGIGNAGKGASDRSSRGGGSREW
SESRSRETDSWDSSRDRSRGSSRDRSRDASRDRLRHSRDSSRDVSTDRSR
GRGRERPGERSRDRPRDRSRERSRDLPRGRSRDNIRDGKDRLSARSRDSR
CVLLKLCLE*
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mRNA from alignment at H-elongata_contig68336:406..2724-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68336.14462.1 ID=mRNA_H-elongata_contig68336.14462.1|Name=mRNA_H-elongata_contig68336.14462.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2319bp|location=Sequence derived from alignment at H-elongata_contig68336:406..2724- (Himanthalia elongata Himel1 dioecious)
TCGTTTAGGGAAATATCCACGCAGCTCGAAGATCTTCTGACGGCAGGAAC
GGCCACGGTCTTCTCCAAGTGGTAATCTAGTGATGGATTTGATTGATAAG
CGTCTTTGATATAACGGCATTAGTACAGTACATACCCTTTTGGTAATGTG
AGAAAACGATAACGATTATCTCCCCGTCAATGGTCTACCATCTGACGGCA
AACATGCAAAACTCGAGAACGCCCCGTCCGTCCGTCCTGATTGCATGATT
GCATGATTTCTACGCAGTAAATGTTTTTGTTGCCTGGTGTAAACAATAGC
CGAATCAACATAACCCAAAACAATAGCCCGCAAGCAGTTTTTTTTTTGGC
TTCCTTTTTCCCCCCTTTATTTCCTTTCTTTTTTCTAGTATATAAACTAC
TTGGTGTATATTTATCTCCTTTCCTCCCCATTCTTGATCTCCTTGTTGGA
GCCCCTCGGATTCCCGATTCCCGCCGCCGCCAGACGAAAAATGTGACCGT
TTCAACTCACGGCTTGAATTGTCTGTTTTTTGGCCAATCAATAGGCTCGG
GAACCACCTGCGAGGCCTGGGAAAGCAAAAAAACCCTGCTTCTGCCCCCA
TCGAAGCTGCTCCTGCAAACACTGGCGGTAGCCGTCATCATGCTGATGGT
GGGGCGACGGGTTCATCGTCGTCGAAGTCGAGGGCAAACCCCAAGAGTAA
AAGTAGTGGTATCGGGAATGCCGGCAAAGGCGCAAGCGACCGATCTTCTC
GCGGAGGTGGTGGTAGCGGCGGAGTCGCGGTATCGGAGGATTCAGGGGGT
GGGGGAAAGATCGGCGGCACGGGGGGCAAGGACAAGGCCTCTGGCTCCAA
GGTGCGCTTGATATGCCATCTCATAAATCCATAGTTCAGTATCGTAAATA
GTTAATTGATTATTTAGTTCCACGAGTGGTTGTATACATAGCTCAATATA
GGGAAATCTTAATCGGGCGGGTATTGATGCTGACCAGCCAATGAGATATC
TTGTTTAATATATATAAGGCTTTATCCGGAGCGGGAGTTAACGCTGACTA
GCTAGCTCAGCCTATTAAACGTTTTATGGGAGGGGGGATCGGTCAAACTT
CAAACCTAAGATCTAACCCTAAGGTAATAAAACTTTTTAATACTGAATGC
TGAATGCTGACATCCGGGTTACGTTCCGCCCTCCAGTCGTCGTACACTAT
ACGCGTATGAGTTAGATGTTTTTTGTTGAATATCAATTTCTGCCGATGGG
GTACAGGATCGGCCATTTCATGAGCTAGGTTTACCAGTTGCGCCGATCCC
GATGCTGCCGACCCCGCCAGTGATACTAAGGAATATGGGTACACCCACAC
ATGTCATCCCCTGTCAAATCCTAACCCTATTAGTAAGTCTTTTGAGCAGC
GGTGCAAGTTTATAATAATGCCCCTCCTTACAAGTTAAAAAGTGGATGGA
TTTTTTTTACTCGCGTAACCGTGCTTTTTTGTCGAGATTGGATGGGAAAA
CTGCTGTGCAAGTGATCATATCGGTGGACAGATTCCCCTTTAAACCACCC
GAGGTTGCGGGTTAGACGTGTAATATCTGATTATTACATTACATGTAGAC
TCTAAGCGCGCTTTGTAGTGTAGTTCTAGTCAGCACCAATTGCTGCGATA
TATTGAGGAGTGGCGAGATGAGGAACCTTGAGAGGAAGGGAAACTGGCCC
TGGAGGCTTGGTGTAGCTCCGTCGATTGGTCCCTTCTCGTGCCAAAAGGC
AGACGGCGGATCTATCAATCCTATCCCGCATTTTTTTGTGGACCAGTCTT
CGGGTAAGGCGACCCCTACAGTACCAAACCCACAGTTTGCACTATGTAAT
TGATTTAGAGTTTTCCTTTTTTTCCCAGTGATGCTTGAATCCGTTGGCTG
GTTCATTTATTTTGAAATGCGTTGGGGTGGGTCAGGCACCCAAAATGACC
AGCGGCGGCGGCGCAAGAGACGGAGGATCGCGGGAATGGTCGGAGAGCCG
GAGCAGGGAAACAGACTCCTGGGATAGTTCTCGAGACCGTTCTCGCGGCA
GTTCTCGGGACCGGTCGAGGGATGCTTCGAGAGACCGTTTACGGCATTCT
AGGGACAGCTCGCGAGACGTGTCCACGGATCGATCCAGGGGCCGTGGCCG
AGAACGTCCGGGAGAACGTTCTAGGGATCGACCAAGAGACCGTTCTAGAG
AACGTTCTAGGGATCTTCCGCGTGGCCGATCCAGAGACAACATCCGAGAC
GGAAAGGATCGTCTGAGTGCCAGGAGCAGGGACAGCAGGTGCGTTCTGCT
AAAATTGTGTTTGGAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig68336:406..2724-

>mRNA_H-elongata_contig68336.14462.1 ID=mRNA_H-elongata_contig68336.14462.1|Name=mRNA_H-elongata_contig68336.14462.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1260bp|location=Sequence derived from alignment at H-elongata_contig68336:406..2724- (Himanthalia elongata Himel1 dioecious)
TCGTTTAGGGAAATATCCACGCAGCTCGAAGATCTTCTGACGGCAGGAAC
GGCCACGGTCTTCTCCAAGTGTCGTTTAGGGAAATATCCACGCAGCTCGA
AGATCTTCTGACGGCAGGAACGGCCACGGTCTTCTCCAAGTGGCTCGGGA
ACCACCTGCGAGGCCTGGGAAAGCAAAAAAACCCTGCTTCTGCCCCCATC
GAAGCTGCTCCTGCAAACACTGGCGGTAGCCGTCATCATGCTGATGGTGG
GGCGACGGGTTCATCGTCGTCGAAGTCGAGGGCAAACCCCAAGAGTAAAA
GTAGTGGTATCGGGAATGCCGGCAAAGGCGCAAGCGACCGATCTTCTCGC
GGAGGTGGCTCGGGAACCACCTGCGAGGCCTGGGAAAGCAAAAAAACCCT
GCTTCTGCCCCCATCGAAGCTGCTCCTGCAAACACTGGCGGTAGCCGTCA
TCATGCTGATGGTGGGGCGACGGGTTCATCGTCGTCGAAGTCGAGGGCAA
ACCCCAAGAGTAAAAGTAGTGGTATCGGGAATGCCGGCAAAGGCGCAAGC
GACCGATCTTCTCGCGGAGGTGGATCGCGGGAATGGTCGGAGAGCCGGAG
CAGGGAAACAGACTCCTGGGATAGTTCTCGAGACCGTTCTCGCGGCAGTT
CTCGGGACCGGTCGAGGGATGCTTCGAGAGACCGTTTACGGCATTCTAGG
GACAGCTCGCGAGACGTGTCCACGGATCGATCCAGGGGCCGTGGCCGAGA
ACGTCCGGGAGAACGTTCTAGGGATCGACCAAGAGACCGTTCTAGAGAAC
GTTCTAGGGATCTTCCGCGTGGCCGATCCAGAGACAACATCCGAGACGGA
AAGGATCGTCTGAGTGCCAGGAGCAGGGACAGCAGGTGCGTTCTGCTAAA
ATTGTGTTTGGAGTAAGATCGCGGGAATGGTCGGAGAGCCGGAGCAGGGA
AACAGACTCCTGGGATAGTTCTCGAGACCGTTCTCGCGGCAGTTCTCGGG
ACCGGTCGAGGGATGCTTCGAGAGACCGTTTACGGCATTCTAGGGACAGC
TCGCGAGACGTGTCCACGGATCGATCCAGGGGCCGTGGCCGAGAACGTCC
GGGAGAACGTTCTAGGGATCGACCAAGAGACCGTTCTAGAGAACGTTCTA
GGGATCTTCCGCGTGGCCGATCCAGAGACAACATCCGAGACGGAAAGGAT
CGTCTGAGTGCCAGGAGCAGGGACAGCAGGTGCGTTCTGCTAAAATTGTG
TTTGGAGTAA
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