mRNA_H-elongata_contig6806.14432.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6806.14432.1
Unique NamemRNA_H-elongata_contig6806.14432.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6806.14432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6806contigH-elongata_contig6806:7948..9119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size452
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6806.14432.1prot_H-elongata_contig6806.14432.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6806 8083..9036 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931073.5501122-UTR-H-elongata_contig6806:7947..80821622931073.5501122-UTR-H-elongata_contig6806:7947..8082Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6806 7948..8082 +
1691679686.7978187-UTR-H-elongata_contig6806:7947..80821691679686.7978187-UTR-H-elongata_contig6806:7947..8082Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6806 7948..8082 +
1622931073.6092365-UTR-H-elongata_contig6806:9036..91191622931073.6092365-UTR-H-elongata_contig6806:9036..9119Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6806 9037..9119 +
1691679686.8233244-UTR-H-elongata_contig6806:9036..91191691679686.8233244-UTR-H-elongata_contig6806:9036..9119Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6806 9037..9119 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931073.574878-CDS-H-elongata_contig6806:8082..82831622931073.574878-CDS-H-elongata_contig6806:8082..8283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6806 8083..8283 +
1691679686.8060973-CDS-H-elongata_contig6806:8082..82831691679686.8060973-CDS-H-elongata_contig6806:8082..8283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6806 8083..8283 +
1622931073.5919747-CDS-H-elongata_contig6806:9003..90361622931073.5919747-CDS-H-elongata_contig6806:9003..9036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6806 9004..9036 +
1691679686.814743-CDS-H-elongata_contig6806:9003..90361691679686.814743-CDS-H-elongata_contig6806:9003..9036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6806 9004..9036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6806.14432.1

>prot_H-elongata_contig6806.14432.1 ID=prot_H-elongata_contig6806.14432.1|Name=mRNA_H-elongata_contig6806.14432.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MGSLSGRHCSRPIQASGCRRYFRGERGRRRGREGFCLANLIGVPLRDETA
GSGVVRERHQPRMDTRSVSNSRWRQRS*
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mRNA from alignment at H-elongata_contig6806:7948..9119+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6806.14432.1 ID=mRNA_H-elongata_contig6806.14432.1|Name=mRNA_H-elongata_contig6806.14432.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1172bp|location=Sequence derived from alignment at H-elongata_contig6806:7948..9119+ (Himanthalia elongata Himel1 dioecious)
GCGTCTCTATCGATCGTCTCCGTCAGGCTTGCCTCGACCGAACGACTTCT
CCTTGTTGCCGAAGCCTCCCCGTTTTCTTGACCTTTCCGATAACCGACCT
CCGGTTGCAGCCCGTCTCAGCATCGGTGACAGCCGATGGGGAGCTTGTCC
GGGCGTCATTGTTCGCGACCGATTCAAGCCAGTGGATGCCGCCGTTATTT
CCGTGGAGAGAGGGGCAGACGAAGAGGAAGAGAAGGCTTCTGCCTTGCGA
ACCTTATCGGCGTCCCTTTGCGAGATGAGACGGCAGGGTCTGGCGTCGTT
CGTGAACGACACCAGCCACGCATGGACACGCGATCGGTGCGATTTGTCAC
AAGAGTTAAAAAAAGGGCTTGTTAGTCTGAAGGGGCCCCTCGTTTGGGTG
TTGGGACGTGACGATTTGGCTGTGGTTTTGTTTTATGTGGTCTTAGGGCA
CTGGCCTCCCCGCCATCCTGATCCTGGAAACCTTCCTAGCATTTACGATT
CAGAGGACAATCCAATTCCTCCACGCTTTGGGGCATGTTTTTTCTCTTCT
GAAACGACACATGGAACTAGAGCAGCATATCATCTACCGTTCGCATGAGA
TCATTGCTCGACCTCGTTTGCCGTGCCTTCCCCCGCATCCACGAACATCG
ACCGAAAATATTCGCATACGGCAAAATCAAATATACGGCAAGATCCACTG
ATTGCTGAAAAAATATACGGCATGGGATCTCGAAAAGATAAGACCGTTCT
TCGTCGACATGTGGCATTTGAAAAATAATCCCTCTAGTTATTCAGGCAGT
GCTCTTTTTACGGTGTTTTATTATTATTATTATTATTGTTATTATTATTA
TTATTGTTATTGTTATTATTATTGTTATTGTTATTATTATTATTGTTATT
ATTATTATTGTTATTATTATTGTTATTATTATTAATATTATTATTATTAT
TATTGTTGGTTGGCTCGTGTCCGCTCTCTCCTTGCAGGCATGACGATATA
AACCCAGCCCTTCTGAATATTTCCCATGCTGTCCGGATTCGTCATGCCGC
TTTTAGGTATCGAACTCCCGATGGCGGCAACGATCTTGAGCACGGAGGAA
TCGTAGATCTATCCGGCAACCGACTTCTCTTCCCTGACTCGGACGAATTT
ACCGCGCCGAACCGAGGCATTG
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Coding sequence (CDS) from alignment at H-elongata_contig6806:7948..9119+

>mRNA_H-elongata_contig6806.14432.1 ID=mRNA_H-elongata_contig6806.14432.1|Name=mRNA_H-elongata_contig6806.14432.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig6806:7948..9119+ (Himanthalia elongata Himel1 dioecious)
ATGGGGAGCTTGTCCGGGCGTCATTGTTCGCGACCGATTCAAGCCAGTGG
ATGCCGCCGTTATTTCCGTGGAGAGAGGGGCAGACGAAGAGGAAGAGAAG
GCTTCTGCCTTGCGAACCTTATCGGCGTCCCTTTGCGAGATGAGACGGCA
GGGTCTGGCGTCGTTCGTGAACGACACCAGCCACGCATGGACACGCGATC
GATGGGGAGCTTGTCCGGGCGTCATTGTTCGCGACCGATTCAAGCCAGTG
GATGCCGCCGTTATTTCCGTGGAGAGAGGGGCAGACGAAGAGGAAGAGAA
GGCTTCTGCCTTGCGAACCTTATCGGCGTCCCTTTGCGAGATGAGACGGC
AGGGTCTGGCGTCGTTCGTGAACGACACCAGCCACGCATGGACACGCGAT
CGGTATCGAACTCCCGATGGCGGCAACGATCTTGAGTATCGAACTCCCGA
TGGCGGCAACGATCTTGA
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