prot_H-elongata_contig6797.14413.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6797.14413.1
Unique Nameprot_H-elongata_contig6797.14413.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length199
Homology
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 2.980e-69
Identity = 113/210 (53.81%), Postives = 149/210 (70.95%), Query Frame = 0
Query:    1 MYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYRRG--------------NPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMKESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALRYVFVQELVKEGQVTIHFVKTEHQLTDLGTTYLSKHRHHFLIKLINEF 196
            MY+ QV +YD +YA  QLAR M+KP K H+  AK+ LRYLAG+ +FSITY++G              NPDN KSTSSY+ +LAN P+SF+ G+Q LTA STMEAELVA+  AMKE++FC N+M ELGF K F ++PVY +NT+ LH   N++ S R KHIALR+ F++ELV EG+++IH+  TE  L D+GT + +KHR   L+ LIN F
Sbjct:  226 MYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435          
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 1.290e-68
Identity = 110/210 (52.38%), Postives = 144/210 (68.57%), Query Frame = 0
Query:    1 MYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYRRG--------------NPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMKESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALRYVFVQELVKEGQVTIHFVKTEHQLTDLGTTYLSKHRHHFLIKLINEF 196
            MY+ QV +YD +YA   LAR M+KP K H   AK  LRYLAG+ +FSITY++G              NPDN KSTSSY+ +LAN P+SF+ G+Q LTA STMEAELVA+  AMKE++FC N+M ELGF K F ++PVY +NT+ LH   N++ S R KHIALR+ F++ELV EG+++IH+  TE  L  +GT + +KHR   L+  IN F
Sbjct:    1 MYIAQVLRYDIMYATGHLARPMAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRINNF 210          
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 6.750e-66
Identity = 112/208 (53.85%), Postives = 148/208 (71.15%), Query Frame = 0
Query:    1 MYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYRRG--------------NPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMKESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALRYVFVQELVKEGQVTIHFVKTEHQLTDLGTTYLSKHRHHFLIKLIN 194
            MY+ QV +YD +YA  QLAR M+KP K H+  AK+ LRYLAG+ +FSITY++G              NPDN KSTSSY+ +LAN P+SF+ G+Q LTA STMEAELVA+  AMKE++FC N+M ELG  K F ++PVY +NT+ LH   N++ S R KHIALR+ F++ELV EG+++IH+V TE  L D+GT + +KHR   L+ LIN
Sbjct:  447 MYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLIN 654          
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 9.630e-66
Identity = 113/210 (53.81%), Postives = 150/210 (71.43%), Query Frame = 0
Query:    1 MYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYRRG--------------NPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMKESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALRYVFVQELVKEGQVTIHFVKTEHQLTDLGTTYLSKHRHHFLIKLINEF 196
            MY+ QV +YD +YA  QLAR M+KP K H+  AK+ LRYLAG+ +FSITY++G              NPDN KSTSSY+ +LAN P+SF+ G+Q LTA STMEAELVA+  AMKE++FC N+M ELGF K F ++PVY +NT+ LH   N++ S R KHIALR+ F++ELV EG+++IH+V+TE  L D+GT + + HR   L+ LIN F
Sbjct:  786 MYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995          
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 1.050e-63
Identity = 112/210 (53.33%), Postives = 148/210 (70.48%), Query Frame = 0
Query:    1 MYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYRRG--------------NPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMKESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALRYVFVQELVKEGQVTIHFVKTEHQLTDLGTTYLSKHRHHFLIKLINEF 196
            MY+ QV +YD +YA  QLAR M+KP K H+  AK+ LRYLAG+ +FSITY++G              NPDN KSTSSY+ +LAN P+SF+ G+Q LTA STMEAELVA+  AM E++F  N+M ELGF K F ++PVY +NT+ LH   N++ S R KHIALR+ F++ELV EG+++IH+V TE  L D+GT + +KHR   L+ LIN F
Sbjct: 1455 MYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664          
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 5.730e-63
Identity = 110/209 (52.63%), Postives = 150/209 (71.77%), Query Frame = 0
Query:    1 MYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYRRG--------------NPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMKESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALRYVFVQELVKEGQVTIHFVKTEHQLTDLGTTYLSKHRHHFLIKLINE 195
            +YL Q+++YD +Y  +QLAR MS P K H+  AK++LRYL+GS +FSITY+RG              NPDN KS SSYI++++  P+SFK G+QSLTA ST+EAELVAA  AMKE++FC N+M ELGF   FR  P+YIN T+ LHV  N+T S R KH+ALR+ +++E+VKEG+++IH++ TE  L D+GT +L+K RH  LI  I +
Sbjct:  480 IYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYIN-TATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLIDKIKK 687          
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 1.060e-59
Identity = 104/210 (49.52%), Postives = 145/210 (69.05%), Query Frame = 0
Query:    1 MYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYRRG--------------NPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMKESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALRYVFVQELVKEGQVTIHFVKTEHQLTDLGTTYLSKHRHHFLIKLINEF 196
            MYL QV++YD +Y  +Q AR MS P K H+  AK++LRYL+GS +FSITY+RG              N DN KS SSYI++++  P S K G+QSLTA ST+EAELVA+  AMKE +FC N+M ELGF   F   P++I++T+ L+V  N+T S   KH+ALR+ +++++VKEG+++IH++ TE  L D+GT YL+K RH +LI  I  F
Sbjct:  567 MYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYLIDKIKNF 776          
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 3.810e-56
Identity = 100/212 (47.17%), Postives = 139/212 (65.57%), Query Frame = 0
Query:    1 MYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYRRG--------------NPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMKESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALRYVFVQELVKEGQVTIHFVKTEHQLTDLGTTYLSKHRHHFLIKLINEFRA 198
            +YL Q+ +YD +YA +QLAR M+KP K H+  AK   RYLAG+  F I Y+RG              NPDN KSTSS++ +L + P++FK G+QSLT QSTME ELVAA  A+KE++FC N++ ELGF K   +VP+Y +NT+ LH   N++ S   KHIALR+ F++ELV EG++ IH+V  +    D+GT +L+K R   L+ +I  F  
Sbjct:  509 IYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNIIKNFNV 720          
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 2.350e-52
Identity = 91/163 (55.83%), Postives = 116/163 (71.17%), Query Frame = 0
Query:    1 MYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYRRG--------------NPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMKESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALR 149
            MY+ QV +YD +YA  QLAR M+KP K H+  AK+ LRYLAG+ +FSITY++G              NPDN KSTSSY+ +LAN P+SF+ G+Q LTA STMEAELVA+  AMKE++FC N+M ELGF K F ++PVY +NT+ LH   N++ S R KHIALR
Sbjct:  103 MYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALR 265          
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 4.500e-45
Identity = 87/164 (53.05%), Postives = 114/164 (69.51%), Query Frame = 0
Query:   16 NQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYRRG--------------NPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMKESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALRYVFVQELVKEGQVTIH 165
            +QLAR MSK  KAH+  AK++LR   G+ +F ITY+RG              NPDN +STSSY+++++  P+SFK G+Q LT  STMEAEL+AA   MKE++FC N+M ELGF + F +VP+YINNT+ LHV  N+  S R KHIAL +  V+ELVKEG +TIH
Sbjct:  340 SQLARVMSKAAKAHMGAAKHLLR---GTQDFCITYKRGGFKLTAFSDANWESNPDNARSTSSYMIMMSKAPVSFKTGLQDLTVMSTMEAELLAAALTMKEAVFCSNMMTELGFGQQFGQVPLYINNTATLHVIGNQAYSSRTKHIALLFFCVRELVKEGAITIH 500          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE2.980e-6953.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMK0_9PHAE1.290e-6852.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME8_9PHAE6.750e-6653.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE9.630e-6653.81Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE1.050e-6353.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBU1_9PHAE5.730e-6352.63CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L6R7_9PHAE1.060e-5949.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JG39_9PHAE3.810e-5647.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KNV2_9PHAE2.350e-5255.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6N1_9PHAE4.500e-4553.05Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 10..163
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 10..163

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6797contigH-elongata_contig6797:5446..6084 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6797.14413.1mRNA_H-elongata_contig6797.14413.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6797 5425..6084 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6797.14413.1 ID=prot_H-elongata_contig6797.14413.1|Name=mRNA_H-elongata_contig6797.14413.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=199bp
MYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITY
RRGNPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMK
ESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALRY
VFVQELVKEGQVTIHFVKTEHQLTDLGTTYLSKHRHHFLIKLINEFRA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like