mRNA_H-elongata_contig67952.14409.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Match: D8LCZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCZ3_ECTSI) HSP 1 Score: 182 bits (463), Expect = 1.840e-51 Identity = 88/98 (89.80%), Postives = 95/98 (96.94%), Query Frame = 1
Query: 1 DLVQYIHACQGEGAILIFLSGWEEISAVHDKLEMLPQARQWRLYALHSQMPTNQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 294
DLV+++HA +GEGAILIFLSGWEEISAVHDKLE LP+AR WRLYALHSQMPT+QQRDVFLRPPRG+RKIVIATNIAESSITIDDVVYVIDGGKHKEKS
Sbjct: 431 DLVRHVHAYEGEGAILIFLSGWEEISAVHDKLEALPEARAWRLYALHSQMPTSQQRDVFLRPPRGVRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 528
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Match: A0A4D9CM44_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CM44_9STRA) HSP 1 Score: 144 bits (362), Expect = 3.420e-42 Identity = 67/97 (69.07%), Postives = 84/97 (86.60%), Query Frame = 1
Query: 4 LVQYIHACQGEGAILIFLSGWEEISAVHDKLEMLPQARQWRLYALHSQMPTNQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 294
LV+ I A +G GAIL+FL GWE+I+ VH+ L+ LPQ+R+WRLY LHSQ+P +QQR++F PP G+RKIV+ATNIAESSITIDDVVYV+DGGKHKEK+
Sbjct: 22 LVKKIDAEEGSGAILVFLPGWEDITKVHETLQRLPQSRRWRLYPLHSQLPMDQQREIFSPPPPGLRKIVLATNIAESSITIDDVVYVLDGGKHKEKT 118
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Match: I2CQV2_NANGC (ATP-dependent RNA helicase DHX36 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CQV2_NANGC) HSP 1 Score: 143 bits (361), Expect = 9.800e-38 Identity = 67/97 (69.07%), Postives = 84/97 (86.60%), Query Frame = 1
Query: 4 LVQYIHACQGEGAILIFLSGWEEISAVHDKLEMLPQARQWRLYALHSQMPTNQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 294
LV+ I A +G GAIL+FL GWE+I+ VH+ L+ LPQ+R+WRLY LHSQ+P +QQR++F PP G+RKIV+ATNIAESSITIDDVVYV+DGGKHKEK+
Sbjct: 49 LVKKIDAEEGPGAILVFLPGWEDITKVHETLQRLPQSRRWRLYPLHSQLPMDQQREIFSPPPPGLRKIVLATNIAESSITIDDVVYVLDGGKHKEKT 145
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Match: A0A7R9YF83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YF83_9STRA) HSP 1 Score: 113 bits (283), Expect = 3.830e-30 Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query: 1 DLVQYIHACQGEGAILIFLSGWEEISAVHDKLEMLPQARQWRLYALHSQMPTNQQRDVFLRP--PRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 294
LV++IH GEGAILIF+SGW I A+ KL LP+A ++Y LH MP +QQR +F +P PR +RK+V++TNIAESSITI+DVVYVID GK KEK+
Sbjct: 29 SLVRHIHREMGEGAILIFMSGWGPIDALCSKLRKLPEAASLKIYQLHGSMPMSQQRGIFEKPADPR-VRKVVVSTNIAESSITIEDVVYVIDFGKRKEKT 127
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Match: A0A7S0MWB1_9CHLO (RNA helicase n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MWB1_9CHLO) HSP 1 Score: 121 bits (304), Expect = 4.900e-30 Identity = 63/97 (64.95%), Postives = 75/97 (77.32%), Query Frame = 1
Query: 4 LVQYIHACQGEGAILIFLSGWEEISAVHDKLEMLPQARQWRLYALHSQMPTNQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 294
LVQ I +G+GA+LIFL GWE+IS V D L+ L W LY LH +PT+QQR +F RPP G+RKIV+ATNIAESSITIDDV+YVID GKHKEK+
Sbjct: 62 LVQMIDK-EGDGAVLIFLPGWEDISKVVDSLKSLG-CPHWLLYPLHGSLPTSQQRGIFDRPPPGVRKIVVATNIAESSITIDDVIYVIDCGKHKEKT 156
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Match: A0A7C9ACT9_OPUST (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9ACT9_OPUST) HSP 1 Score: 112 bits (281), Expect = 5.480e-30 Identity = 57/99 (57.58%), Postives = 75/99 (75.76%), Query Frame = 1
Query: 7 VQYIHACQGEGAILIFLSGWEEISAVHDKLE---MLPQARQWRLYALHSQMPTNQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 294
++YI +GEGAIL+FL+GW+EIS +HDK++ L +R++ + LH MPT QR++F R P +RKIV+ATNIAESSITIDDVVYV+D GK KE S
Sbjct: 20 IEYICLNEGEGAILVFLTGWDEISKLHDKIKANKFLGDSRKFLVLPLHGSMPTVNQREIFDRSPASMRKIVLATNIAESSITIDDVVYVVDCGKAKETS 118
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Match: A0A7C9A9S9_OPUST (Uncharacterized protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9A9S9_OPUST) HSP 1 Score: 115 bits (289), Expect = 1.140e-29 Identity = 58/99 (58.59%), Postives = 76/99 (76.77%), Query Frame = 1
Query: 7 VQYIHACQGEGAILIFLSGWEEISAVHDKLE---MLPQARQWRLYALHSQMPTNQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 294
++YI +GEGAIL+FL+GW+EIS +HDK++ L +R++ + LH MPT QR++F RPP +RKIV+ATNIAESSITIDDVVYV+D GK KE S
Sbjct: 159 IEYICLNEGEGAILVFLTGWDEISKLHDKIKANKFLGDSRKFLVLPLHGSMPTVNQREIFDRPPASMRKIVLATNIAESSITIDDVVYVVDCGKAKETS 257
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Match: A0A7S3FTI7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FTI7_9CHLO) HSP 1 Score: 113 bits (283), Expect = 1.410e-29 Identity = 54/105 (51.43%), Postives = 80/105 (76.19%), Query Frame = 1
Query: 1 DLVQYI--HAC--QGEGAILIFLSGWEEISAVHDKLE---MLPQARQWRLYALHSQMPTNQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 294
DL++++ H C +GEGA+L+FL+GW++IS +HD+L+ +L Q+R+ LH MPT Q+ +F PP G+RKIV++TNIAE+SITIDD+V+V+D GK KEK+
Sbjct: 51 DLIEHVIEHICVTEGEGAMLVFLTGWDDISKLHDQLQRNRILSNKNQYRIIPLHGSMPTANQQKIFANPPPGVRKIVLSTNIAETSITIDDIVFVVDCGKAKEKT 155
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Match: UPI00077A3C86 (ATP-dependent RNA helicase DHX36-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A3C86) HSP 1 Score: 117 bits (293), Expect = 1.510e-28 Identity = 59/99 (59.60%), Postives = 78/99 (78.79%), Query Frame = 1
Query: 4 LVQYIHACQGEGAILIFLSGWEEISAVHDKL--EMLPQARQWRLYALHSQMPTNQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 294
+V +I EGAIL+FL GW++IS VHDKL E + + ++R+ LHS MP++ Q++VF RPP G+RKIVIATNIAE+SITIDDVV+V+DGGK KEK+
Sbjct: 277 VVTHISLHMEEGAILVFLPGWDDISKVHDKLKEEKMFSSDKFRIIPLHSMMPSSNQKEVFDRPPEGVRKIVIATNIAETSITIDDVVFVVDGGKVKEKT 375
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Match: UPI001CF2D9CA (ATP-dependent DNA/RNA helicase DHX36-like isoform X2 n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF2D9CA) HSP 1 Score: 117 bits (292), Expect = 2.100e-28 Identity = 59/99 (59.60%), Postives = 77/99 (77.78%), Query Frame = 1
Query: 4 LVQYIHACQGEGAILIFLSGWEEISAVHDKL--EMLPQARQWRLYALHSQMPTNQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 294
+V +I EGAIL+FL GW++IS VHDKL E + + ++R+ LHS MP+ Q++VF RPP G+RKIVIATNIAE+SITIDDVV+V+DGGK KEK+
Sbjct: 546 VVTHISLHMEEGAILVFLPGWDDISKVHDKLKEEKMFSSDKFRIIPLHSMMPSTNQKEVFDRPPEGVRKIVIATNIAETSITIDDVVFVVDGGKVKEKT 644 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig67952.14409.1 >prot_H-elongata_contig67952.14409.1 ID=prot_H-elongata_contig67952.14409.1|Name=mRNA_H-elongata_contig67952.14409.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp DLVQYIHACQGEGAILIFLSGWEEISAVHDKLEMLPQARQWRLYALHSQMback to top mRNA from alignment at H-elongata_contig67952:395..1844- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig67952.14409.1 ID=mRNA_H-elongata_contig67952.14409.1|Name=mRNA_H-elongata_contig67952.14409.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1450bp|location=Sequence derived from alignment at H-elongata_contig67952:395..1844- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig67952:395..1844- >mRNA_H-elongata_contig67952.14409.1 ID=mRNA_H-elongata_contig67952.14409.1|Name=mRNA_H-elongata_contig67952.14409.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig67952:395..1844- (Himanthalia elongata Himel1 dioecious)back to top |