mRNA_H-elongata_contig67439.14349.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67439.14349.1
Unique NamemRNA_H-elongata_contig67439.14349.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67439.14349.1 vs. uniprot
Match: A0A6H5K415_9PHAE (DUF4042 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K415_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 7.590e-15
Identity = 64/122 (52.46%), Postives = 70/122 (57.38%), Query Frame = -1 
Query:   26 LARVVHALNHLVQPAGEAENTAAXXXXXXXXXXXSGSRXXXXXXXXXGGREDGVELS-------------PTRASSAAASPSFSLADPRGRVRLQALTLLEAMAAKAANILYPHWPLFFATC 352
            LARVVHALNHLVQPAGE E + A           SG  XXXXXXXXX                       PTR+S++A     SL DPR RVRLQAL LLE+MAAK A  +YPHW LFFA C
Sbjct:  222 LARVVHALNHLVQPAGEGERSGAATTAAATRGA-SGXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXPTRSSASA-----SLVDPRARVRLQALALLESMAAKDAKSMYPHWALFFAPC 337
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67439.14349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K415_9PHAE7.590e-1552.46DUF4042 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67439contigH-elongata_contig67439:2589..2940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size352
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931064.981771-UTR-H-elongata_contig67439:2588..26371622931064.981771-UTR-H-elongata_contig67439:2588..2637Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67439 2589..2637 +
1691679683.5249019-UTR-H-elongata_contig67439:2588..26371691679683.5249019-UTR-H-elongata_contig67439:2588..2637Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67439 2589..2637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.0330017-CDS-H-elongata_contig67439:2637..29401622931065.0330017-CDS-H-elongata_contig67439:2637..2940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67439 2638..2940 +
1691679683.536052-CDS-H-elongata_contig67439:2637..29401691679683.536052-CDS-H-elongata_contig67439:2637..2940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67439 2638..2940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67439.14349.1prot_H-elongata_contig67439.14349.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67439 2638..2940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67439.14349.1

>prot_H-elongata_contig67439.14349.1 ID=prot_H-elongata_contig67439.14349.1|Name=mRNA_H-elongata_contig67439.14349.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MGVEYVRSLRRHRLQQCQSLEPHAPPRVRQRERWGCRRRGCSRRRQLYTV
LAPAALTPTATPAPTPAVVSSTTRRRCCCRCIFRLPSRLNKMIEGVDNPS
E
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mRNA from alignment at H-elongata_contig67439:2589..2940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67439.14349.1 ID=mRNA_H-elongata_contig67439.14349.1|Name=mRNA_H-elongata_contig67439.14349.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=352bp|location=Sequence derived from alignment at H-elongata_contig67439:2589..2940+ (Himanthalia elongata Himel1 dioecious)
CCGTGCCGACGCCCACTGATCGATCACACGTCGCAAAAAACAGCGGCCAA
TGGGGGTAGAGTATGTTCGCAGCCTTCGCCGCCATCGCCTCCAGCAATGT
CAGAGCCTGGAGCCTCACGCGCCCCCTCGGGTCCGCCAGAGAGAAAGATG
GGGATGCCGCCGCCGAGGATGCTCTCGTCGGAGACAACTCTACACCGTCC
TCGCGCCCGCCGCCTTGACCCCGACCGCGACTCCTGCTCCGACTCCCGCT
GTTGTTTCTTCGACCACCCGCCGCCGCTGCTGCTGCCGCTGTATTTTCCG
CCTCCCCAGCCGGCTGAACAAGATGATTGAGGGCGTGGACAACCCGAGCG
AG
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Coding sequence (CDS) from alignment at H-elongata_contig67439:2589..2940+

>mRNA_H-elongata_contig67439.14349.1 ID=mRNA_H-elongata_contig67439.14349.1|Name=mRNA_H-elongata_contig67439.14349.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig67439:2589..2940+ (Himanthalia elongata Himel1 dioecious)
ATGGGGGTAGAGTATGTTCGCAGCCTTCGCCGCCATCGCCTCCAGCAATG
TCAGAGCCTGGAGCCTCACGCGCCCCCTCGGGTCCGCCAGAGAGAAAGAT
GGGGATGCCGCCGCCGAGGATGCTCTCGTCGGAGACAACTCTACACCGTC
CTCGCGCCCGCCGCCTTGACCCCGACCGCGACTCCTGCTCCGACTCCCGC
TGTTGTTTCTTCGACCACCCGCCGCCGCTGCTGCTGCCGCTGTATTTTCC
GCCTCCCCAGCCGGCTGAACAAGATGATTGAGGGCGTGGACAACCCGAGC
GAGATGGGGGTAGAGTATGTTCGCAGCCTTCGCCGCCATCGCCTCCAGCA
ATGTCAGAGCCTGGAGCCTCACGCGCCCCCTCGGGTCCGCCAGAGAGAAA
GATGGGGATGCCGCCGCCGAGGATGCTCTCGTCGGAGACAACTCTACACC
GTCCTCGCGCCCGCCGCCTTGACCCCGACCGCGACTCCTGCTCCGACTCC
CGCTGTTGTTTCTTCGACCACCCGCCGCCGCTGCTGCTGCCGCTGTATTT
TCCGCCTCCCCAGCCGGCTGAACAAGATGATTGAGGGCGTGGACAACCCG
AGCGAG
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