mRNA_H-elongata_contig67398.14345.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67398.14345.1
Unique NamemRNA_H-elongata_contig67398.14345.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67398.14345.1 vs. uniprot
Match: D8LT47_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT47_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 6.550e-9
Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:   16 LESWAMRQRETRLVVSDVVASEELRSSLPPHGVSAGTAVPPAPLPGLSGVSAKICTVLLFLFVAAWPF 219
            L+ W +R R   +   D   + ELR   PP  V  G +    PLPGLS +SAK+CTVLLFLFVAAWPF
Sbjct:    3 LDGW-VRHRADVMAAYDTAPAAELR---PPPIVMGGAS---PPLPGLSRLSAKVCTVLLFLFVAAWPF 63
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67398.14345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT47_ECTSI6.550e-951.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67398contigH-elongata_contig67398:2859..3329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_004130.1
Exons2
Model size219
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931064.679691-CDS-H-elongata_contig67398:2858..30321622931064.679691-CDS-H-elongata_contig67398:2858..3032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67398 2859..3032 +
1691679683.4324954-CDS-H-elongata_contig67398:2858..30321691679683.4324954-CDS-H-elongata_contig67398:2858..3032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67398 2859..3032 +
1622931064.6996207-CDS-H-elongata_contig67398:3284..33291622931064.6996207-CDS-H-elongata_contig67398:3284..3329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67398 3285..3329 +
1691679683.4421248-CDS-H-elongata_contig67398:3284..33291691679683.4421248-CDS-H-elongata_contig67398:3284..3329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67398 3285..3329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67398.14345.1prot_H-elongata_contig67398.14345.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67398 2859..3329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67398.14345.1

>prot_H-elongata_contig67398.14345.1 ID=prot_H-elongata_contig67398.14345.1|Name=mRNA_H-elongata_contig67398.14345.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MDYDALESWAMRQRETRLVVSDVVASEELRSSLPPHGVSAGTAVPPAPLP
GLSGVSAKICTVLLFLFVAAWPF
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mRNA from alignment at H-elongata_contig67398:2859..3329+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67398.14345.1 ID=mRNA_H-elongata_contig67398.14345.1|Name=mRNA_H-elongata_contig67398.14345.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=471bp|location=Sequence derived from alignment at H-elongata_contig67398:2859..3329+ (Himanthalia elongata Himel1 dioecious)
ATGGATTATGACGCTTTGGAGTCTTGGGCCATGCGGCAACGTGAGACGCG
CTTGGTCGTATCGGACGTCGTCGCATCCGAGGAGCTGCGATCATCATTAC
CGCCGCATGGCGTGAGCGCGGGGACTGCGGTTCCTCCGGCCCCTCTACCA
GGACTCAGCGGGGTTTCGGCGAAGGTGAGCGGGAGAATTCCGCCCCGCAC
GTTAATCGATGAGCGCGACCGTATCGACTACCGTGGCCCGGGGGGTCATT
CGTATCGCCGTGCCATGTGGCACAAAATTCGACTTATCACGTTGGTCATT
CACTCCGATCCACTCCGTCTATCTCGTCCGTGTGGGTACGCGTGCGTGTG
TCCGTTCCTCTGCCGCGCCCATCCGTCGTCACCGCCGCCGCCGCCGCCGC
CCGATAATCCCCCCACCTGCGATCAGATCTGCACGGTGCTACTTTTCCTC
TTCGTGGCCGCGTGGCCCTTC
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Coding sequence (CDS) from alignment at H-elongata_contig67398:2859..3329+

>mRNA_H-elongata_contig67398.14345.1 ID=mRNA_H-elongata_contig67398.14345.1|Name=mRNA_H-elongata_contig67398.14345.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig67398:2859..3329+ (Himanthalia elongata Himel1 dioecious)
ATGGATTATGACGCTTTGGAGTCTTGGGCCATGCGGCAACGTGAGACGCG
CTTGGTCGTATCGGACGTCGTCGCATCCGAGGAGCTGCGATCATCATTAC
CGCCGCATGGCGTGAGCGCGGGGACTGCGGTTCCTCCGGCCCCTCTACCA
GGACTCAGCGGGGTTTCGGCGAAGATGGATTATGACGCTTTGGAGTCTTG
GGCCATGCGGCAACGTGAGACGCGCTTGGTCGTATCGGACGTCGTCGCAT
CCGAGGAGCTGCGATCATCATTACCGCCGCATGGCGTGAGCGCGGGGACT
GCGGTTCCTCCGGCCCCTCTACCAGGACTCAGCGGGGTTTCGGCGAAGAT
CTGCACGGTGCTACTTTTCCTCTTCGTGGCCGCGTGGCCCTTCATCTGCA
CGGTGCTACTTTTCCTCTTCGTGGCCGCGTGGCCCTTC
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