mRNA_H-elongata_contig67216.14330.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67216.14330.1
Unique NamemRNA_H-elongata_contig67216.14330.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67216.14330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67216contigH-elongata_contig67216:903..1519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size619
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931063.1910732-CDS-H-elongata_contig67216:902..10791622931063.1910732-CDS-H-elongata_contig67216:902..1079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67216 903..1079 +
1691679682.7341094-CDS-H-elongata_contig67216:902..10791691679682.7341094-CDS-H-elongata_contig67216:902..1079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67216 903..1079 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931063.2016058-UTR-H-elongata_contig67216:1079..15191622931063.2016058-UTR-H-elongata_contig67216:1079..1519Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67216 1080..1519 +
1691679682.7449443-UTR-H-elongata_contig67216:1079..15191691679682.7449443-UTR-H-elongata_contig67216:1079..1519Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67216 1080..1519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67216.14330.1prot_H-elongata_contig67216.14330.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67216 903..1079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67216.14330.1

>prot_H-elongata_contig67216.14330.1 ID=prot_H-elongata_contig67216.14330.1|Name=mRNA_H-elongata_contig67216.14330.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
FLDPPSRLLYERVSGGKAPTLKPAELDAAIARARLIQETRRRRRLREKKA
REAAEATR*
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mRNA from alignment at H-elongata_contig67216:903..1519+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67216.14330.1 ID=mRNA_H-elongata_contig67216.14330.1|Name=mRNA_H-elongata_contig67216.14330.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=617bp|location=Sequence derived from alignment at H-elongata_contig67216:903..1519+ (Himanthalia elongata Himel1 dioecious)
TTCCTAGATCCACCGAGCCGCCTCCTATACGAGCGTGTCTCGGGTGGAAA
AGCACCCACACTGAAGCCGGCCGAGCTCGACGCGGCGATCGCCAGAGCGC
GGCTGATTCAGGAAACAAGGCGGAGGCGGCGGCTTCGTGAGAAAAAAGCA
CGCGAAGCGGCCGAGGCGACTCGATGACTTGAAACGTACGAAAAGCCTGG
GGATTCCAGAGATTGAGCCAGTTGTTGCCATGGGGGAAAATCCTTGATAT
TTCATTAATATATAATATACAGTATTATACTCTATTACGAACTATGTGGG
TACTATAGTGACCTACCCTATCGTAACATACCTTATCGTAGGGTTAGGGT
TCTGAATATCCCGCCCGATTTTGTCGGAACTATCGAAGGACTGTACGAAT
TTTGGACGACATAATTTGTGACGTGATGCTACTATTTTTTAATAGTGTTG
TCGAAAGAGTAGTTTTTAGGCTTTAGAGCGGTCCATGCCAAGGGTGTGTT
GGATACTCACCCTCACCCATGATGCCCTGATATATTTGGTTAGGGTTAGG
GTTAGCGCATTATTATATCCTTCGTACGTCTGAAACGTCTCCTCTCCGTT
CGAGCGTGTCCGCCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig67216:903..1519+

>mRNA_H-elongata_contig67216.14330.1 ID=mRNA_H-elongata_contig67216.14330.1|Name=mRNA_H-elongata_contig67216.14330.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig67216:903..1519+ (Himanthalia elongata Himel1 dioecious)
TTCCTAGATCCACCGAGCCGCCTCCTATACGAGCGTGTCTCGGGTGGAAA
AGCACCCACACTGAAGCCGGCCGAGCTCGACGCGGCGATCGCCAGAGCGC
GGCTGATTCAGGAAACAAGGCGGAGGCGGCGGCTTCGTGAGAAAAAAGCA
CGCGAAGCGGCCGAGGCGACTCGATGATTCCTAGATCCACCGAGCCGCCT
CCTATACGAGCGTGTCTCGGGTGGAAAAGCACCCACACTGAAGCCGGCCG
AGCTCGACGCGGCGATCGCCAGAGCGCGGCTGATTCAGGAAACAAGGCGG
AGGCGGCGGCTTCGTGAGAAAAAAGCACGCGAAGCGGCCGAGGCGACTCG
ATGA
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